Wall clock time and date at job start Tue Mar 31 2020 01:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35972 * 126.37231 * 2 1 4 4 N 1.30208 * 110.13717 * 179.97438 * 3 2 1 5 5 C 1.35593 * 109.71213 * 0.02562 * 4 3 2 6 6 C 1.40062 * 133.38691 * 180.02562 * 5 4 3 7 7 C 1.36177 * 120.08705 * 179.73795 * 6 5 4 8 8 C 1.40230 * 120.51421 * 0.52130 * 7 6 5 9 9 C 1.47677 * 119.93939 * 179.75478 * 8 7 6 10 10 C 1.39432 * 120.79272 * 129.44147 * 9 8 7 11 11 N 1.31621 * 120.64292 * 179.68092 * 10 9 8 12 12 C 1.32255 * 122.51872 * 0.63865 * 11 10 9 13 13 C 1.36420 * 121.53773 * 359.65571 * 12 11 10 14 14 C 1.41159 * 119.11136 * 0.02562 * 13 12 11 15 15 C 1.40841 * 121.10927 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00182 * 154.59227 * 15 14 13 17 17 C 1.40151 * 120.00123 * 334.58962 * 15 14 13 18 18 N 1.30698 * 120.00081 * 344.31559 * 17 15 14 19 19 Si 1.86800 * 119.99833 * 164.32339 * 17 15 14 20 20 H 1.48500 * 109.47437 * 89.99910 * 19 17 15 21 21 H 1.48503 * 109.46652 * 209.99800 * 19 17 15 22 22 H 1.48498 * 109.47422 * 329.99261 * 19 17 15 23 23 C 1.39456 * 120.11642 * 359.47474 * 8 7 6 24 24 C 1.38185 * 126.36902 * 179.97438 * 2 1 3 25 25 H 1.08993 * 109.47296 * 270.04697 * 1 2 3 26 26 H 1.09004 * 109.46963 * 30.04424 * 1 2 3 27 27 H 1.08998 * 109.47039 * 150.03896 * 1 2 3 28 28 H 1.08001 * 124.93007 * 359.92430 * 3 2 1 29 29 H 1.08006 * 119.95766 * 359.97438 * 6 5 4 30 30 H 1.08000 * 119.73974 * 180.25213 * 7 6 5 31 31 H 1.07999 * 119.67466 * 359.97438 * 10 9 8 32 32 H 1.08001 * 119.22840 * 179.67318 * 12 11 10 33 33 H 1.07996 * 120.44492 * 180.02562 * 13 12 11 34 34 H 0.97002 * 120.00049 * 180.02562 * 18 17 15 35 35 H 1.08004 * 120.21211 * 180.27788 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2714 1.0948 0.0000 4 7 3.5215 0.7308 0.0005 5 6 3.6038 -0.6227 0.0004 6 6 4.6781 -1.5213 0.0012 7 6 4.4458 -2.8631 0.0061 8 6 3.1340 -3.3586 -0.0006 9 6 2.8967 -4.8162 -0.0006 10 6 2.0259 -5.3976 0.9201 11 7 1.8118 -6.6963 0.9134 12 6 2.4076 -7.5107 0.0584 13 6 3.2820 -7.0451 -0.8795 14 6 3.5558 -5.6615 -0.9363 15 6 4.4510 -5.1353 -1.8879 16 1 4.3583 -4.1074 -2.2060 17 6 5.4621 -5.9456 -2.4220 18 7 5.7761 -7.0707 -1.8356 19 14 6.3612 -5.4175 -3.9719 20 1 7.5491 -4.6064 -3.6031 21 1 6.7977 -6.6206 -4.7251 22 1 5.4514 -4.6060 -4.8198 23 6 2.0531 -2.4774 -0.0014 24 6 2.2844 -1.1127 0.0005 25 1 -0.3633 0.0008 1.0276 26 1 -0.3633 0.8896 -0.5145 27 1 -0.3633 -0.8903 -0.5132 28 1 1.9252 2.1178 -0.0012 29 1 5.6922 -1.1495 0.0018 30 1 5.2784 -3.5509 0.0108 31 1 1.5186 -4.7757 1.6428 32 1 2.1967 -8.5689 0.1037 33 1 3.7582 -7.7260 -1.5694 34 1 6.4762 -7.6313 -2.2050 35 1 1.0421 -2.8573 -0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240321280.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:50 Heat of formation + Delta-G solvation = 95.615514 kcal Electronic energy + Delta-G solvation = -20527.563896 eV Core-core repulsion = 17490.548852 eV Total energy + Delta-G solvation = -3037.015044 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.65014 -38.61396 -36.57796 -34.26813 -33.95362 -31.33726 -30.37243 -29.74820 -27.65622 -26.79556 -25.94178 -23.16424 -22.01277 -21.49396 -20.37709 -20.02183 -17.68341 -16.74231 -16.61137 -15.62705 -15.50219 -15.25963 -14.54854 -14.37641 -13.83956 -13.58537 -13.27290 -13.08002 -12.78604 -12.67728 -12.61138 -12.26130 -11.71753 -11.52444 -11.32299 -11.19644 -10.91981 -10.80746 -10.38159 -10.02355 -9.89646 -9.57608 -9.52512 -8.30093 -8.07675 -7.88718 -7.71541 -7.21543 -6.92544 -4.68840 1.40292 2.10215 2.61196 2.74402 2.88925 2.97274 3.02106 3.17210 3.28752 3.77371 4.48238 4.53511 4.62817 4.72655 4.90878 5.10658 5.32735 5.50423 5.56491 5.66659 5.79503 5.96292 6.02936 6.04901 6.23726 6.42291 6.71072 6.74565 6.80936 6.92902 6.99489 7.05571 7.27809 7.31296 7.42724 7.47446 7.52512 7.77602 7.99750 8.23863 8.34499 8.59166 8.63415 9.54324 9.90739 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016246 B = 0.006217 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.098962 B = 4503.058448 C = 5766.370211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.501 5.501 3 C 0.232 3.768 4 N -0.496 5.496 5 C 0.023 3.977 6 C -0.075 4.075 7 C -0.098 4.098 8 C 0.052 3.948 9 C -0.237 4.237 10 C 0.132 3.868 11 N -0.579 5.579 12 C 0.081 3.919 13 C -0.207 4.207 14 C 0.147 3.853 15 C -0.437 4.437 16 H 0.088 0.912 17 C 0.078 3.922 18 N -0.776 5.776 19 Si 0.909 3.091 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.136 4.136 24 C 0.054 3.946 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.205 0.795 29 H 0.121 0.879 30 H 0.136 0.864 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.286 0.714 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.420 9.598 0.147 11.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.194 5.194 3 C -0.053 4.053 4 N -0.216 5.216 5 C -0.094 4.094 6 C -0.095 4.095 7 C -0.118 4.118 8 C 0.050 3.950 9 C -0.243 4.243 10 C -0.026 4.026 11 N -0.294 5.294 12 C -0.066 4.066 13 C -0.229 4.229 14 C 0.139 3.861 15 C -0.467 4.467 16 H 0.106 0.894 17 C -0.143 4.143 18 N -0.400 5.400 19 Si 0.732 3.268 20 H -0.190 1.190 21 H -0.199 1.199 22 H -0.182 1.182 23 C -0.157 4.157 24 C -0.054 4.054 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.221 0.779 29 H 0.139 0.861 30 H 0.154 0.846 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.097 0.903 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.267 9.488 0.732 10.877 hybrid contribution 0.249 0.070 -1.349 1.374 sum -5.018 9.558 -0.617 10.813 Atomic orbital electron populations 1.21867 0.76829 1.04217 1.02991 1.45157 1.06768 1.05739 1.61714 1.25050 0.85493 0.92982 1.01758 1.70267 1.18120 1.11782 1.21392 1.18998 0.92350 0.89646 1.08427 1.19893 0.96718 0.91584 1.01275 1.20992 0.97444 0.94026 0.99370 1.18423 0.91359 0.92087 0.93160 1.19463 1.10026 0.91397 1.03418 1.22103 0.93937 0.91106 0.95486 1.67313 1.29280 1.04576 1.28204 1.21713 0.94479 0.97668 0.92704 1.21900 1.01788 0.96859 1.02376 1.17721 0.88526 0.90986 0.88900 1.19628 1.09744 0.98863 1.18482 0.89368 1.26037 0.96773 0.93919 0.97579 1.69744 1.24192 1.10466 1.35583 0.86275 0.80012 0.79399 0.81107 1.18954 1.19852 1.18158 1.19990 0.99094 0.88076 1.08577 1.18787 0.90854 0.89105 1.06606 0.91184 0.89904 0.89944 0.77894 0.86122 0.84613 0.86183 0.86435 0.85646 0.90265 0.86779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 11.18 59.85 0.67 1.42 16 2 N -0.50 -6.99 3.21 -123.19 -0.40 -7.39 16 3 C 0.23 3.14 12.50 -89.76 -1.12 2.02 16 4 N -0.50 -8.74 11.27 -11.95 -0.13 -8.87 16 5 C 0.02 0.44 7.23 -84.58 -0.61 -0.17 16 6 C -0.07 -1.43 10.03 -39.64 -0.40 -1.82 16 7 C -0.10 -1.99 7.99 -39.57 -0.32 -2.31 16 8 C 0.05 1.10 4.99 -104.84 -0.52 0.57 16 9 C -0.24 -5.50 5.53 -104.04 -0.57 -6.07 16 10 C 0.13 2.99 10.71 -17.20 -0.18 2.81 16 11 N -0.58 -13.73 10.32 -13.35 -0.14 -13.87 16 12 C 0.08 1.90 11.08 -18.02 -0.20 1.70 16 13 C -0.21 -5.10 8.72 -39.13 -0.34 -5.44 16 14 C 0.15 3.65 5.59 -106.25 -0.59 3.06 16 15 C -0.44 -10.66 7.29 -37.88 -0.28 -10.93 16 16 H 0.09 2.14 6.71 -52.48 -0.35 1.79 16 17 C 0.08 1.81 5.21 -17.32 -0.09 1.72 16 18 N -0.78 -18.43 10.95 55.56 0.61 -17.83 16 19 Si 0.91 17.61 29.59 -169.99 -5.03 12.58 16 20 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 21 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 22 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 23 C -0.14 -2.56 9.54 -39.06 -0.37 -2.93 16 24 C 0.05 0.96 6.86 -83.99 -0.58 0.39 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.20 1.69 8.06 -52.49 -0.42 1.26 16 29 H 0.12 2.06 8.06 -52.48 -0.42 1.64 16 30 H 0.14 2.85 7.36 -52.49 -0.39 2.47 16 31 H 0.12 2.41 8.05 -52.49 -0.42 1.98 16 32 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 33 H 0.13 3.12 6.27 -52.49 -0.33 2.79 16 34 H 0.29 6.17 8.29 -40.82 -0.34 5.83 16 35 H 0.11 1.98 8.05 -52.48 -0.42 1.56 16 LS Contribution 304.44 15.07 4.59 4.59 Total: -1.00 -29.46 304.44 -9.60 -39.05 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -3.58 Total: 7.73 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -5.51 Total: -15.99 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -0.06 Total: -47.95 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.46 -9.60 -39.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240321280.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.667 kcal (2) G-P(sol) polarization free energy of solvation -29.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds