Wall clock time and date at job start Tue Mar 31 2020 01:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35972 * 126.37231 * 2 1 4 4 N 1.30208 * 110.13717 * 179.97438 * 3 2 1 5 5 C 1.35593 * 109.71213 * 0.02562 * 4 3 2 6 6 C 1.40062 * 133.38691 * 180.02562 * 5 4 3 7 7 C 1.36177 * 120.08705 * 179.73795 * 6 5 4 8 8 C 1.40230 * 120.51421 * 0.52130 * 7 6 5 9 9 C 1.47677 * 119.93939 * 179.75478 * 8 7 6 10 10 C 1.39432 * 120.79272 * 129.44147 * 9 8 7 11 11 N 1.31621 * 120.64292 * 179.68092 * 10 9 8 12 12 C 1.32255 * 122.51872 * 0.63865 * 11 10 9 13 13 C 1.36420 * 121.53773 * 359.65571 * 12 11 10 14 14 C 1.41159 * 119.11136 * 0.02562 * 13 12 11 15 15 C 1.40841 * 121.10927 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00182 * 154.59227 * 15 14 13 17 17 C 1.40151 * 120.00123 * 334.58962 * 15 14 13 18 18 N 1.30698 * 120.00081 * 344.31559 * 17 15 14 19 19 Si 1.86800 * 119.99833 * 164.32339 * 17 15 14 20 20 H 1.48500 * 109.47437 * 89.99910 * 19 17 15 21 21 H 1.48503 * 109.46652 * 209.99800 * 19 17 15 22 22 H 1.48498 * 109.47422 * 329.99261 * 19 17 15 23 23 C 1.39456 * 120.11642 * 359.47474 * 8 7 6 24 24 C 1.38185 * 126.36902 * 179.97438 * 2 1 3 25 25 H 1.08993 * 109.47296 * 270.04697 * 1 2 3 26 26 H 1.09004 * 109.46963 * 30.04424 * 1 2 3 27 27 H 1.08998 * 109.47039 * 150.03896 * 1 2 3 28 28 H 1.08001 * 124.93007 * 359.92430 * 3 2 1 29 29 H 1.08006 * 119.95766 * 359.97438 * 6 5 4 30 30 H 1.08000 * 119.73974 * 180.25213 * 7 6 5 31 31 H 1.07999 * 119.67466 * 359.97438 * 10 9 8 32 32 H 1.08001 * 119.22840 * 179.67318 * 12 11 10 33 33 H 1.07996 * 120.44492 * 180.02562 * 13 12 11 34 34 H 0.97002 * 120.00049 * 180.02562 * 18 17 15 35 35 H 1.08004 * 120.21211 * 180.27788 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2714 1.0948 0.0000 4 7 3.5215 0.7308 0.0005 5 6 3.6038 -0.6227 0.0004 6 6 4.6781 -1.5213 0.0012 7 6 4.4458 -2.8631 0.0061 8 6 3.1340 -3.3586 -0.0006 9 6 2.8967 -4.8162 -0.0006 10 6 2.0259 -5.3976 0.9201 11 7 1.8118 -6.6963 0.9134 12 6 2.4076 -7.5107 0.0584 13 6 3.2820 -7.0451 -0.8795 14 6 3.5558 -5.6615 -0.9363 15 6 4.4510 -5.1353 -1.8879 16 1 4.3583 -4.1074 -2.2060 17 6 5.4621 -5.9456 -2.4220 18 7 5.7761 -7.0707 -1.8356 19 14 6.3612 -5.4175 -3.9719 20 1 7.5491 -4.6064 -3.6031 21 1 6.7977 -6.6206 -4.7251 22 1 5.4514 -4.6060 -4.8198 23 6 2.0531 -2.4774 -0.0014 24 6 2.2844 -1.1127 0.0005 25 1 -0.3633 0.0008 1.0276 26 1 -0.3633 0.8896 -0.5145 27 1 -0.3633 -0.8903 -0.5132 28 1 1.9252 2.1178 -0.0012 29 1 5.6922 -1.1495 0.0018 30 1 5.2784 -3.5509 0.0108 31 1 1.5186 -4.7757 1.6428 32 1 2.1967 -8.5689 0.1037 33 1 3.7582 -7.7260 -1.5694 34 1 6.4762 -7.6313 -2.2050 35 1 1.0421 -2.8573 -0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240321280.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:49 Heat of formation + Delta-G solvation = 80.767371 kcal Electronic energy + Delta-G solvation = -20528.207759 eV Core-core repulsion = 17490.548852 eV Total energy + Delta-G solvation = -3037.658908 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.90631 -40.35923 -38.06607 -36.05041 -35.11012 -33.00310 -32.05166 -31.21176 -29.22217 -27.91159 -27.55570 -24.64797 -23.57497 -23.16264 -21.90196 -21.32398 -19.48342 -18.05492 -17.89343 -17.33055 -16.79761 -16.59594 -16.24636 -16.05044 -15.23816 -14.94680 -14.67852 -14.41608 -14.30520 -14.10268 -13.96995 -13.47295 -13.30539 -13.17057 -12.97690 -12.79014 -12.36567 -12.30471 -11.99202 -11.70086 -11.28742 -11.20456 -10.87150 -10.01903 -9.90777 -9.65219 -9.11778 -8.84521 -8.58991 -6.52827 -0.01401 0.59165 0.95899 1.00396 1.37355 1.48059 1.54765 1.83382 1.98587 2.15453 2.74105 2.99808 3.46675 3.68821 3.78675 3.96260 4.01618 4.14497 4.29810 4.48357 4.50136 4.55270 4.60551 4.73059 4.76268 4.89959 4.97465 5.01398 5.22190 5.32402 5.41437 5.50680 5.53968 5.63669 5.80713 5.95843 6.05777 6.19408 6.37814 6.51269 6.76896 6.80839 6.99962 7.71236 8.18487 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016246 B = 0.006217 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.098962 B = 4503.058448 C = 5766.370211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.497 5.497 3 C 0.262 3.738 4 N -0.539 5.539 5 C 0.010 3.990 6 C -0.082 4.082 7 C -0.107 4.107 8 C 0.021 3.979 9 C -0.237 4.237 10 C 0.123 3.877 11 N -0.590 5.590 12 C 0.078 3.922 13 C -0.228 4.228 14 C 0.119 3.881 15 C -0.455 4.455 16 H 0.081 0.919 17 C 0.044 3.956 18 N -0.803 5.803 19 Si 0.973 3.027 20 H -0.260 1.260 21 H -0.261 1.261 22 H -0.262 1.262 23 C -0.122 4.122 24 C 0.040 3.960 25 H 0.087 0.913 26 H 0.122 0.878 27 H 0.078 0.922 28 H 0.262 0.738 29 H 0.131 0.869 30 H 0.116 0.884 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.116 0.884 34 H 0.295 0.705 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.828 12.192 -0.168 13.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.188 5.188 3 C -0.023 4.023 4 N -0.259 5.259 5 C -0.107 4.107 6 C -0.102 4.102 7 C -0.127 4.127 8 C 0.018 3.982 9 C -0.242 4.242 10 C -0.034 4.034 11 N -0.305 5.305 12 C -0.070 4.070 13 C -0.250 4.250 14 C 0.111 3.889 15 C -0.485 4.485 16 H 0.099 0.901 17 C -0.174 4.174 18 N -0.427 5.427 19 Si 0.794 3.206 20 H -0.185 1.185 21 H -0.185 1.185 22 H -0.186 1.186 23 C -0.143 4.143 24 C -0.069 4.069 25 H 0.105 0.895 26 H 0.140 0.860 27 H 0.097 0.903 28 H 0.277 0.723 29 H 0.149 0.851 30 H 0.134 0.866 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.134 0.866 34 H 0.106 0.894 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.718 12.088 0.436 13.836 hybrid contribution 0.562 -0.517 -1.179 1.405 sum -6.156 11.571 -0.743 13.128 Atomic orbital electron populations 1.22283 0.73573 1.06059 1.04728 1.45515 1.08639 1.04376 1.60250 1.26206 0.84285 0.94808 0.96978 1.70288 1.20657 1.10692 1.24254 1.19248 0.92802 0.90752 1.07924 1.19969 0.97697 0.91187 1.01320 1.20775 0.96800 0.94367 1.00772 1.18351 0.92294 0.91315 0.96240 1.19708 1.09211 0.92680 1.02624 1.22485 0.94050 0.91116 0.95762 1.67378 1.29653 1.05102 1.28324 1.22041 0.93917 0.98856 0.92183 1.21895 1.02947 0.96903 1.03276 1.18095 0.89422 0.91642 0.89756 1.19694 1.10624 0.98851 1.19355 0.90131 1.26747 0.97038 0.93749 0.99913 1.69772 1.24865 1.11313 1.36775 0.85315 0.78660 0.79258 0.77388 1.18483 1.18550 1.18581 1.19997 0.98884 0.88509 1.06927 1.18804 0.91526 0.89704 1.06914 0.89470 0.85978 0.90325 0.72284 0.85117 0.86609 0.83781 0.84113 0.86599 0.89412 0.85554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 11.18 127.77 1.43 2.41 16 2 N -0.50 -12.00 3.21 -543.67 -1.74 -13.74 16 3 C 0.26 5.95 12.50 180.05 2.25 8.20 16 4 N -0.54 -17.69 11.27 -191.71 -2.16 -19.85 16 5 C 0.01 0.38 7.23 39.62 0.29 0.66 16 6 C -0.08 -3.18 10.03 22.23 0.22 -2.96 16 7 C -0.11 -4.53 7.99 22.27 0.18 -4.35 16 8 C 0.02 0.88 4.99 -20.01 -0.10 0.78 16 9 C -0.24 -11.30 5.53 -19.49 -0.11 -11.41 16 10 C 0.12 5.62 10.71 85.01 0.91 6.53 16 11 N -0.59 -28.12 10.32 -196.15 -2.02 -30.15 16 12 C 0.08 3.70 11.08 84.20 0.93 4.63 16 13 C -0.23 -11.63 8.72 22.56 0.20 -11.44 16 14 C 0.12 6.16 5.59 -20.92 -0.12 6.04 16 15 C -0.46 -23.12 7.29 23.37 0.17 -22.95 16 16 H 0.08 4.10 6.71 -2.91 -0.02 4.08 16 17 C 0.04 2.11 5.21 85.33 0.44 2.55 16 18 N -0.80 -39.23 10.95 21.86 0.24 -38.99 16 19 Si 0.97 36.58 29.59 68.60 2.03 38.61 16 20 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 21 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 22 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 23 C -0.12 -4.52 9.54 22.61 0.22 -4.31 16 24 C 0.04 1.35 6.86 38.79 0.27 1.62 16 25 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.12 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.26 2.58 8.06 -2.91 -0.02 2.55 16 29 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 30 H 0.12 5.24 7.36 -2.91 -0.02 5.22 16 31 H 0.14 5.70 8.05 -2.91 -0.02 5.68 16 32 H 0.14 5.83 8.06 -2.91 -0.02 5.81 16 33 H 0.12 6.02 6.27 -2.91 -0.02 6.01 16 34 H 0.29 12.94 8.29 -92.71 -0.77 12.17 16 35 H 0.13 4.24 8.05 -2.91 -0.02 4.22 16 Total: -1.00 -66.25 304.44 4.64 -61.61 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 1.12 Total: 26.49 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: 7.18 Total: -23.98 kcal Atomic # 7 Polarization: -97.04 SS G_CDS: -5.69 Total: -102.72 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 2.03 Total: 38.61 kcal Total: -66.25 4.64 -61.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240321280.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.376 kcal (2) G-P(sol) polarization free energy of solvation -66.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds