Wall clock time and date at job start Tue Mar 31 2020 01:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36030 * 126.36408 * 2 1 4 4 N 1.30126 * 110.12210 * 179.97438 * 3 2 1 5 5 C 1.35744 * 109.67350 * 359.97438 * 4 3 2 6 6 C 1.39886 * 133.42074 * 179.97438 * 5 4 3 7 7 C 1.36347 * 120.04374 * 180.02562 * 6 5 4 8 8 C 1.39857 * 120.54484 * 0.02562 * 7 6 5 9 9 C 1.48357 * 119.90019 * 179.97438 * 8 7 6 10 10 C 1.39747 * 120.40871 * 179.72243 * 9 8 7 11 11 N 1.31906 * 121.14217 * 179.76915 * 10 9 8 12 12 C 1.31522 * 122.12665 * 0.49892 * 11 10 9 13 13 C 1.40782 * 120.66967 * 359.77097 * 12 11 10 14 14 C 1.41439 * 120.60135 * 179.97438 * 13 12 11 15 15 H 1.08006 * 120.00363 * 23.51519 * 14 13 12 16 16 C 1.39933 * 120.00174 * 203.51110 * 14 13 12 17 17 N 1.30832 * 119.99703 * 17.55425 * 16 14 13 18 18 Si 1.86799 * 120.00168 * 197.54893 * 16 14 13 19 19 H 1.48496 * 109.46805 * 90.00520 * 18 16 14 20 20 H 1.48501 * 109.46841 * 210.00161 * 18 16 14 21 21 H 1.48501 * 109.47294 * 330.00103 * 18 16 14 22 22 C 1.39167 * 120.41929 * 359.97438 * 9 8 7 23 23 C 1.38986 * 120.19103 * 0.02576 * 8 7 6 24 24 C 1.38126 * 126.35832 * 179.97438 * 2 1 3 25 25 H 1.09007 * 109.46695 * 270.02870 * 1 2 3 26 26 H 1.09000 * 109.46776 * 30.02087 * 1 2 3 27 27 H 1.08997 * 109.47405 * 150.02486 * 1 2 3 28 28 H 1.08003 * 124.94019 * 359.97438 * 3 2 1 29 29 H 1.07997 * 119.97731 * 0.03513 * 6 5 4 30 30 H 1.07996 * 119.72418 * 180.28253 * 7 6 5 31 31 H 1.07995 * 119.42644 * 0.02562 * 10 9 8 32 32 H 1.08000 * 119.66762 * 179.74975 * 12 11 10 33 33 H 0.97004 * 120.00019 * 179.97438 * 17 16 14 34 34 H 1.07998 * 120.95264 * 0.02562 * 22 9 8 35 35 H 1.07997 * 120.20547 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2715 1.0954 0.0000 4 7 3.5208 0.7314 0.0005 5 6 3.6021 -0.6236 0.0015 6 6 4.6738 -1.5225 0.0019 7 6 4.4384 -2.8655 0.0024 8 6 3.1292 -3.3576 0.0020 9 6 2.8894 -4.8216 0.0019 10 6 1.5857 -5.3249 0.0073 11 7 1.3559 -6.6238 0.0028 12 6 2.3308 -7.5066 0.0028 13 6 3.6759 -7.0911 0.0029 14 6 4.7232 -8.0417 0.0034 15 1 4.5467 -9.0399 -0.3694 16 6 5.9880 -7.6890 0.4869 17 7 6.1278 -6.6292 1.2413 18 14 7.4770 -8.7312 0.0553 19 1 8.0890 -8.2243 -1.1992 20 1 8.4703 -8.6553 1.1565 21 1 7.0552 -10.1423 -0.1346 22 6 3.9599 -5.7110 0.0018 23 6 2.0523 -2.4790 0.0005 24 6 2.2838 -1.1124 0.0005 25 1 -0.3633 0.0005 1.0278 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5134 28 1 1.9253 2.1184 -0.0004 29 1 5.6885 -1.1526 0.0020 30 1 5.2696 -3.5549 0.0074 31 1 0.7520 -4.6385 0.0111 32 1 2.0971 -8.5610 0.0031 33 1 7.0046 -6.3849 1.5768 34 1 4.9790 -5.3535 0.0022 35 1 1.0413 -2.8587 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240321434.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:40 Heat of formation + Delta-G solvation = 96.559736 kcal Electronic energy + Delta-G solvation = -20163.470601 eV Core-core repulsion = 17126.496502 eV Total energy + Delta-G solvation = -3036.974099 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.86139 -38.66829 -36.82140 -34.23896 -34.05400 -31.48229 -30.63261 -30.00955 -27.62875 -26.95781 -25.68060 -23.21951 -22.70540 -21.39350 -20.47105 -20.10705 -17.47252 -16.99708 -16.65938 -15.84937 -15.68701 -15.28966 -14.96832 -14.41639 -13.92011 -13.46585 -13.38633 -13.28542 -12.99279 -12.75445 -12.56157 -12.20974 -11.72469 -11.45271 -11.37275 -11.33715 -11.18530 -10.82269 -10.59648 -10.20358 -9.93574 -9.75611 -9.44041 -8.80408 -8.17938 -7.96708 -7.88983 -7.12127 -6.89076 -4.56633 1.09913 1.82529 2.52187 2.71638 2.77095 3.00095 3.03042 3.14014 3.25102 3.80782 4.26242 4.45107 4.58735 4.61228 4.70785 5.00683 5.21030 5.31503 5.40796 5.59877 5.66882 5.74001 5.78926 5.97662 6.05712 6.40205 6.46746 6.59459 6.70626 6.74467 6.82455 6.98851 7.08954 7.16922 7.24211 7.30182 7.61304 7.77010 7.84947 8.04629 8.33631 8.59406 8.62166 9.53802 9.98813 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024113 B = 0.004582 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.922109 B = 6109.510002 C = 7186.857419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.501 5.501 3 C 0.241 3.759 4 N -0.496 5.496 5 C 0.029 3.971 6 C -0.066 4.066 7 C -0.114 4.114 8 C 0.016 3.984 9 C -0.092 4.092 10 C -0.024 4.024 11 N -0.470 5.470 12 C -0.017 4.017 13 C 0.061 3.939 14 C -0.449 4.449 15 H 0.085 0.915 16 C 0.075 3.925 17 N -0.788 5.788 18 Si 0.913 3.087 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.114 4.114 23 C -0.121 4.121 24 C 0.053 3.947 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.208 0.792 29 H 0.125 0.875 30 H 0.137 0.863 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.285 0.715 34 H 0.135 0.865 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.887 11.235 -1.721 12.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.192 5.192 3 C -0.044 4.044 4 N -0.215 5.215 5 C -0.088 4.088 6 C -0.086 4.086 7 C -0.134 4.134 8 C 0.013 3.987 9 C -0.094 4.094 10 C -0.182 4.182 11 N -0.177 5.177 12 C -0.178 4.178 13 C 0.057 3.943 14 C -0.478 4.478 15 H 0.103 0.897 16 C -0.144 4.144 17 N -0.413 5.413 18 Si 0.737 3.263 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.139 4.139 23 C -0.142 4.142 24 C -0.055 4.055 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.224 0.776 29 H 0.143 0.857 30 H 0.155 0.845 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.096 0.904 34 H 0.153 0.847 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.003 11.607 -1.573 12.737 hybrid contribution 0.758 -0.481 -0.013 0.898 sum -4.245 11.126 -1.587 12.014 Atomic orbital electron populations 1.21917 0.76513 1.04398 1.03250 1.45197 1.06972 1.05607 1.61470 1.25145 0.85400 0.93100 1.00762 1.70338 1.18197 1.11471 1.21542 1.19007 0.92325 0.89829 1.07655 1.19898 0.97045 0.91363 1.00289 1.20932 0.97136 0.94575 1.00731 1.18677 0.91926 0.92494 0.95558 1.19385 0.95448 0.90456 1.04152 1.21743 0.93531 0.91434 1.11535 1.66931 1.37624 1.02711 1.10436 1.22552 0.88740 0.97231 1.09247 1.18473 0.93243 0.92913 0.89693 1.19584 0.93577 0.98987 1.35679 0.89726 1.25976 1.00787 0.95351 0.92304 1.69779 1.26058 1.23234 1.22201 0.86224 0.79970 0.80952 0.79185 1.19059 1.20131 1.18414 1.21871 0.97972 0.92492 1.01569 1.19912 0.99497 0.88098 1.06700 1.18778 0.90981 0.89176 1.06544 0.90972 0.89696 0.89794 0.77576 0.85669 0.84509 0.86259 0.85536 0.90377 0.84739 0.85908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 11.18 59.85 0.67 1.32 16 2 N -0.50 -6.39 3.21 -123.20 -0.40 -6.79 16 3 C 0.24 2.98 12.50 -89.78 -1.12 1.85 16 4 N -0.50 -8.12 11.27 -12.00 -0.14 -8.26 16 5 C 0.03 0.52 7.23 -84.63 -0.61 -0.09 16 6 C -0.07 -1.17 10.03 -39.65 -0.40 -1.57 16 7 C -0.11 -2.16 9.35 -39.66 -0.37 -2.53 16 8 C 0.02 0.32 5.88 -104.85 -0.62 -0.30 16 9 C -0.09 -2.10 5.88 -104.82 -0.62 -2.71 16 10 C -0.02 -0.56 10.59 -16.96 -0.18 -0.74 16 11 N -0.47 -11.43 10.32 -12.27 -0.13 -11.56 16 12 C -0.02 -0.41 10.96 -16.72 -0.18 -0.60 16 13 C 0.06 1.56 5.59 -106.71 -0.60 0.97 16 14 C -0.45 -11.19 9.08 -37.73 -0.34 -11.53 16 15 H 0.08 2.01 7.90 -52.48 -0.41 1.59 16 16 C 0.07 1.76 5.18 -17.34 -0.09 1.67 16 17 N -0.79 -19.06 10.92 55.55 0.61 -18.46 16 18 Si 0.91 17.60 29.59 -169.99 -5.03 12.57 16 19 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 20 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 22 C -0.11 -2.81 8.16 -38.23 -0.31 -3.12 16 23 C -0.12 -2.14 9.43 -39.17 -0.37 -2.51 16 24 C 0.05 0.88 6.87 -84.00 -0.58 0.31 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.21 1.46 8.06 -52.48 -0.42 1.04 16 29 H 0.13 1.95 8.06 -52.49 -0.42 1.52 16 30 H 0.14 2.61 6.22 -52.49 -0.33 2.29 16 31 H 0.12 2.37 6.18 -52.49 -0.32 2.04 16 32 H 0.13 2.88 8.06 -52.49 -0.42 2.46 16 33 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 34 H 0.14 3.31 4.41 -52.49 -0.23 3.08 16 35 H 0.12 1.96 6.20 -52.49 -0.33 1.64 16 LS Contribution 302.36 15.07 4.56 4.56 Total: -1.00 -30.17 302.36 -9.54 -39.71 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -3.29 Total: 7.81 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -5.72 Total: -19.58 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: -0.05 Total: -45.06 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.17 -9.54 -39.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240321434.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.267 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds