Wall clock time and date at job start Tue Mar 31 2020 01:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36030 * 126.36408 * 2 1 4 4 N 1.30126 * 110.12210 * 179.97438 * 3 2 1 5 5 C 1.35744 * 109.67350 * 359.97438 * 4 3 2 6 6 C 1.39886 * 133.42074 * 179.97438 * 5 4 3 7 7 C 1.36347 * 120.04374 * 180.02562 * 6 5 4 8 8 C 1.39857 * 120.54484 * 0.02562 * 7 6 5 9 9 C 1.48357 * 119.90019 * 179.97438 * 8 7 6 10 10 C 1.39747 * 120.40871 * 179.72243 * 9 8 7 11 11 N 1.31906 * 121.14217 * 179.76915 * 10 9 8 12 12 C 1.31522 * 122.12665 * 0.49892 * 11 10 9 13 13 C 1.40782 * 120.66967 * 359.77097 * 12 11 10 14 14 C 1.41439 * 120.60135 * 179.97438 * 13 12 11 15 15 H 1.08006 * 120.00363 * 23.51519 * 14 13 12 16 16 C 1.39933 * 120.00174 * 203.51110 * 14 13 12 17 17 N 1.30832 * 119.99703 * 17.55425 * 16 14 13 18 18 Si 1.86799 * 120.00168 * 197.54893 * 16 14 13 19 19 H 1.48496 * 109.46805 * 90.00520 * 18 16 14 20 20 H 1.48501 * 109.46841 * 210.00161 * 18 16 14 21 21 H 1.48501 * 109.47294 * 330.00103 * 18 16 14 22 22 C 1.39167 * 120.41929 * 359.97438 * 9 8 7 23 23 C 1.38986 * 120.19103 * 0.02576 * 8 7 6 24 24 C 1.38126 * 126.35832 * 179.97438 * 2 1 3 25 25 H 1.09007 * 109.46695 * 270.02870 * 1 2 3 26 26 H 1.09000 * 109.46776 * 30.02087 * 1 2 3 27 27 H 1.08997 * 109.47405 * 150.02486 * 1 2 3 28 28 H 1.08003 * 124.94019 * 359.97438 * 3 2 1 29 29 H 1.07997 * 119.97731 * 0.03513 * 6 5 4 30 30 H 1.07996 * 119.72418 * 180.28253 * 7 6 5 31 31 H 1.07995 * 119.42644 * 0.02562 * 10 9 8 32 32 H 1.08000 * 119.66762 * 179.74975 * 12 11 10 33 33 H 0.97004 * 120.00019 * 179.97438 * 17 16 14 34 34 H 1.07998 * 120.95264 * 0.02562 * 22 9 8 35 35 H 1.07997 * 120.20547 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2715 1.0954 0.0000 4 7 3.5208 0.7314 0.0005 5 6 3.6021 -0.6236 0.0015 6 6 4.6738 -1.5225 0.0019 7 6 4.4384 -2.8655 0.0024 8 6 3.1292 -3.3576 0.0020 9 6 2.8894 -4.8216 0.0019 10 6 1.5857 -5.3249 0.0073 11 7 1.3559 -6.6238 0.0028 12 6 2.3308 -7.5066 0.0028 13 6 3.6759 -7.0911 0.0029 14 6 4.7232 -8.0417 0.0034 15 1 4.5467 -9.0399 -0.3694 16 6 5.9880 -7.6890 0.4869 17 7 6.1278 -6.6292 1.2413 18 14 7.4770 -8.7312 0.0553 19 1 8.0890 -8.2243 -1.1992 20 1 8.4703 -8.6553 1.1565 21 1 7.0552 -10.1423 -0.1346 22 6 3.9599 -5.7110 0.0018 23 6 2.0523 -2.4790 0.0005 24 6 2.2838 -1.1124 0.0005 25 1 -0.3633 0.0005 1.0278 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5134 28 1 1.9253 2.1184 -0.0004 29 1 5.6885 -1.1526 0.0020 30 1 5.2696 -3.5549 0.0074 31 1 0.7520 -4.6385 0.0111 32 1 2.0971 -8.5610 0.0031 33 1 7.0046 -6.3849 1.5768 34 1 4.9790 -5.3535 0.0022 35 1 1.0413 -2.8587 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240321434.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:39 Heat of formation + Delta-G solvation = 80.871490 kcal Electronic energy + Delta-G solvation = -20164.150895 eV Core-core repulsion = 17126.496502 eV Total energy + Delta-G solvation = -3037.654393 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.02769 -40.40289 -38.25903 -35.98442 -35.19830 -33.07495 -32.35532 -31.41549 -29.09808 -27.90691 -27.42882 -24.61274 -24.31603 -22.93573 -21.99957 -21.35327 -19.22429 -18.24901 -17.97664 -17.48419 -16.92824 -16.69317 -16.54350 -15.95943 -15.25977 -14.81358 -14.78155 -14.48416 -14.41105 -14.04117 -13.93859 -13.43923 -13.35216 -13.15466 -13.00891 -12.79282 -12.67963 -12.35868 -12.15505 -11.70266 -11.33104 -11.21067 -10.95350 -10.40627 -10.02948 -9.74558 -9.22434 -8.76265 -8.56410 -6.46311 -0.29413 0.41507 0.89313 1.11397 1.40443 1.53044 1.53784 1.75195 1.94342 2.18690 2.66865 2.96350 3.34356 3.64196 3.73666 3.85323 3.94732 4.00746 4.25140 4.38059 4.45106 4.48655 4.53573 4.57995 4.74978 4.75630 4.82647 5.00870 5.15237 5.19073 5.27172 5.40795 5.50021 5.53533 5.84116 5.87136 5.91103 6.04263 6.29050 6.47564 6.74395 6.75895 6.90461 7.66566 8.23278 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024113 B = 0.004582 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.922109 B = 6109.510002 C = 7186.857419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.495 5.495 3 C 0.271 3.729 4 N -0.539 5.539 5 C 0.019 3.981 6 C -0.074 4.074 7 C -0.122 4.122 8 C -0.021 4.021 9 C -0.085 4.085 10 C -0.033 4.033 11 N -0.478 5.478 12 C -0.040 4.040 13 C 0.038 3.962 14 C -0.479 4.479 15 H 0.087 0.913 16 C 0.038 3.962 17 N -0.815 5.815 18 Si 0.986 3.014 19 H -0.262 1.262 20 H -0.268 1.268 21 H -0.255 1.255 22 C -0.140 4.140 23 C -0.103 4.103 24 C 0.037 3.963 25 H 0.086 0.914 26 H 0.124 0.876 27 H 0.082 0.918 28 H 0.264 0.736 29 H 0.138 0.862 30 H 0.123 0.877 31 H 0.150 0.850 32 H 0.136 0.864 33 H 0.293 0.707 34 H 0.127 0.873 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.946 13.679 -1.899 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.185 5.185 3 C -0.014 4.014 4 N -0.259 5.259 5 C -0.099 4.099 6 C -0.093 4.093 7 C -0.142 4.142 8 C -0.024 4.024 9 C -0.087 4.087 10 C -0.191 4.191 11 N -0.186 5.186 12 C -0.200 4.200 13 C 0.033 3.967 14 C -0.508 4.508 15 H 0.105 0.895 16 C -0.179 4.179 17 N -0.440 5.440 18 Si 0.806 3.194 19 H -0.186 1.186 20 H -0.192 1.192 21 H -0.179 1.179 22 C -0.165 4.165 23 C -0.124 4.124 24 C -0.072 4.072 25 H 0.104 0.896 26 H 0.142 0.858 27 H 0.101 0.899 28 H 0.280 0.720 29 H 0.155 0.845 30 H 0.141 0.859 31 H 0.167 0.833 32 H 0.154 0.846 33 H 0.104 0.896 34 H 0.145 0.855 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.117 14.056 -1.748 15.429 hybrid contribution 0.938 -0.924 0.063 1.318 sum -5.179 13.132 -1.686 14.217 Atomic orbital electron populations 1.22342 0.73307 1.06398 1.04837 1.45559 1.08797 1.04242 1.59945 1.26304 0.84194 0.94907 0.96023 1.70366 1.20725 1.10404 1.24369 1.19288 0.92803 0.90922 1.06858 1.19990 0.98095 0.90886 1.00368 1.20806 0.96571 0.95074 1.01732 1.18573 0.93161 0.91292 0.99353 1.19630 0.94997 0.92032 1.02023 1.22237 0.94510 0.91420 1.10950 1.66948 1.37567 1.03404 1.10638 1.22716 0.88753 0.97919 1.10634 1.18799 0.93977 0.93686 0.90187 1.19862 0.94732 0.99267 1.36986 0.89451 1.26815 1.03082 0.96491 0.91489 1.69830 1.27197 1.24464 1.22525 0.85133 0.76064 0.79191 0.79006 1.18625 1.19226 1.17902 1.21908 0.98354 0.92752 1.03509 1.19962 0.99364 0.88497 1.04575 1.18804 0.91678 0.89764 1.06979 0.89553 0.85764 0.89892 0.72005 0.84463 0.85941 0.83272 0.84640 0.89587 0.85541 0.84338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 11.18 127.77 1.43 2.21 16 2 N -0.50 -10.68 3.21 -543.70 -1.74 -12.42 16 3 C 0.27 5.46 12.50 180.05 2.25 7.71 16 4 N -0.54 -16.26 11.27 -191.87 -2.16 -18.43 16 5 C 0.02 0.65 7.23 39.51 0.29 0.94 16 6 C -0.07 -2.64 10.03 22.23 0.22 -2.42 16 7 C -0.12 -4.81 9.35 22.22 0.21 -4.60 16 8 C -0.02 -0.87 5.88 -20.01 -0.12 -0.99 16 9 C -0.08 -3.98 5.88 -19.99 -0.12 -4.10 16 10 C -0.03 -1.52 10.59 85.05 0.90 -0.62 16 11 N -0.48 -23.70 10.32 -192.74 -1.99 -25.69 16 12 C -0.04 -2.05 10.96 85.36 0.94 -1.11 16 13 C 0.04 2.02 5.59 -21.22 -0.12 1.91 16 14 C -0.48 -24.86 9.08 23.47 0.21 -24.65 16 15 H 0.09 4.30 7.90 -2.91 -0.02 4.28 16 16 C 0.04 1.82 5.18 85.25 0.44 2.27 16 17 N -0.82 -40.79 10.92 21.82 0.24 -40.55 16 18 Si 0.99 36.45 29.59 68.60 2.03 38.48 16 19 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 20 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 21 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 22 C -0.14 -7.26 8.16 23.15 0.19 -7.07 16 23 C -0.10 -3.55 9.43 22.54 0.21 -3.34 16 24 C 0.04 1.16 6.87 38.82 0.27 1.43 16 25 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.26 1.95 8.06 -2.91 -0.02 1.93 16 29 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 30 H 0.12 5.06 6.22 -2.91 -0.02 5.04 16 31 H 0.15 5.75 6.18 -2.91 -0.02 5.73 16 32 H 0.14 6.44 8.06 -2.91 -0.02 6.41 16 33 H 0.29 13.21 8.30 -92.71 -0.77 12.45 16 34 H 0.13 6.66 4.41 -2.91 -0.01 6.64 16 35 H 0.14 4.16 6.20 -2.91 -0.02 4.14 16 Total: -1.00 -68.56 302.36 4.71 -63.86 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 1.13 Total: 27.18 kcal Atomic # 6 Polarization: -39.63 SS G_CDS: 7.20 Total: -32.43 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -5.66 Total: -97.09 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Total: -68.56 4.71 -63.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240321434.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.728 kcal (2) G-P(sol) polarization free energy of solvation -68.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds