Wall clock time and date at job start Tue Mar 31 2020 01:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35969 * 126.36954 * 2 1 4 4 N 1.30217 * 110.13476 * 179.56370 * 3 2 1 5 5 C 1.35597 * 109.70378 * 0.47981 * 4 3 2 6 6 C 1.40061 * 133.38985 * 179.42055 * 5 4 3 7 7 C 1.36190 * 120.07655 * 180.02562 * 6 5 4 8 8 C 1.40178 * 120.52358 * 359.97438 * 7 6 5 9 9 C 1.47810 * 119.93647 * 179.97438 * 8 7 6 10 10 C 1.40360 * 120.35148 * 359.97438 * 9 8 7 11 11 C 1.36610 * 118.60292 * 179.97438 * 10 9 8 12 12 C 1.40914 * 119.26487 * 0.02562 * 11 10 9 13 13 C 1.40917 * 119.67437 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99837 * 359.97438 * 13 12 11 15 15 C 1.40064 * 119.99633 * 179.97438 * 13 12 11 16 16 N 1.30735 * 120.00756 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99542 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47206 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47089 * 120.00594 * 17 15 13 20 20 H 1.48499 * 109.46927 * 240.00123 * 17 15 13 21 21 N 1.33810 * 120.65228 * 359.97438 * 12 11 10 22 22 C 1.31172 * 121.50684 * 359.70605 * 21 12 11 23 23 C 1.39408 * 120.13021 * 359.97438 * 8 7 6 24 24 C 1.38175 * 126.36831 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47488 * 270.03027 * 1 2 3 26 26 H 1.08999 * 109.47299 * 30.02964 * 1 2 3 27 27 H 1.09000 * 109.47011 * 150.02748 * 1 2 3 28 28 H 1.08002 * 124.93204 * 359.97416 * 3 2 1 29 29 H 1.07993 * 119.96007 * 0.02860 * 6 5 4 30 30 H 1.08008 * 119.73545 * 179.97438 * 7 6 5 31 31 H 1.08002 * 120.70182 * 0.02726 * 10 9 8 32 32 H 1.08002 * 120.36802 * 179.97438 * 11 10 9 33 33 H 0.96993 * 120.00675 * 179.97438 * 16 15 13 34 34 H 1.07996 * 119.66283 * 180.30341 * 22 21 12 35 35 H 1.08002 * 120.21257 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2713 1.0948 0.0000 4 7 3.5215 0.7308 0.0093 5 6 3.6036 -0.6227 0.0052 6 6 4.6778 -1.5214 0.0009 7 6 4.4450 -2.8633 -0.0032 8 6 3.1336 -3.3584 -0.0025 9 6 2.8959 -4.8172 -0.0075 10 6 3.9772 -5.7120 -0.0135 11 6 3.7165 -7.0530 -0.0175 12 6 2.3783 -7.4945 -0.0160 13 6 2.0995 -8.8758 -0.0195 14 1 2.9094 -9.5902 -0.0237 15 6 0.7719 -9.3222 -0.0175 16 7 -0.2086 -8.4575 -0.0129 17 14 0.4023 -11.1534 -0.0229 18 1 1.6766 -11.9156 -0.0283 19 1 -0.3787 -11.5042 1.1903 20 1 -0.3851 -11.4958 -1.2346 21 7 1.3698 -6.6152 -0.0103 22 6 1.5881 -5.3218 -0.0001 23 6 2.0531 -2.4775 0.0029 24 6 2.2843 -1.1126 0.0005 25 1 -0.3634 0.0005 1.0276 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3633 -0.8902 -0.5134 28 1 1.9250 2.1179 -0.0004 29 1 5.6918 -1.1499 0.0008 30 1 5.2775 -3.5514 -0.0070 31 1 4.9941 -5.3481 -0.0141 32 1 4.5270 -7.7668 -0.0225 33 1 -1.1280 -8.7666 -0.0119 34 1 0.7517 -4.6386 0.0093 35 1 1.0421 -2.8575 0.0030 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240321513.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:43 Heat of formation + Delta-G solvation = 89.268351 kcal Electronic energy + Delta-G solvation = -19912.908185 eV Core-core repulsion = 16875.617907 eV Total energy + Delta-G solvation = -3037.290278 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.91635 -40.28164 -38.15908 -35.63703 -35.03765 -32.85065 -32.51314 -31.27373 -29.76162 -27.80404 -27.09050 -24.70915 -23.89873 -22.89473 -21.94406 -21.32178 -19.50139 -18.13737 -17.95595 -17.35151 -16.92061 -16.63359 -16.11421 -15.74881 -15.30962 -14.72188 -14.61776 -14.41974 -14.37470 -13.99706 -13.85287 -13.65403 -13.34205 -13.00222 -12.73099 -12.67500 -12.54071 -12.31450 -12.09005 -11.75257 -11.32294 -11.20852 -10.88360 -10.30795 -9.91252 -9.53984 -9.16435 -8.60572 -8.37910 -6.50081 -0.13895 0.53088 0.99841 1.22229 1.40785 1.51722 1.56667 1.82096 2.02246 2.19474 2.74333 3.10926 3.43890 3.74213 3.93718 3.95004 4.03826 4.09547 4.25451 4.37300 4.45038 4.48830 4.56248 4.69507 4.72517 4.87347 4.88758 4.91382 5.12470 5.25605 5.40617 5.47230 5.53166 5.57803 5.76778 5.97126 6.05370 6.08529 6.23257 6.35563 6.63687 6.88476 6.98118 8.11064 8.34876 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.032830 B = 0.003752 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.678643 B = 7460.238832 C = 8297.762305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.500 5.500 3 C 0.258 3.742 4 N -0.534 5.534 5 C -0.004 4.004 6 C -0.066 4.066 7 C -0.139 4.139 8 C 0.022 3.978 9 C -0.263 4.263 10 C -0.037 4.037 11 C -0.285 4.285 12 C 0.218 3.782 13 C -0.446 4.446 14 H 0.096 0.904 15 C 0.020 3.980 16 N -0.744 5.744 17 Si 0.991 3.009 18 H -0.251 1.251 19 H -0.265 1.265 20 H -0.265 1.265 21 N -0.522 5.522 22 C 0.134 3.866 23 C -0.147 4.147 24 C 0.045 3.955 25 H 0.084 0.916 26 H 0.123 0.877 27 H 0.077 0.923 28 H 0.259 0.741 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.135 0.865 32 H 0.116 0.884 33 H 0.283 0.717 34 H 0.134 0.866 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.757 12.531 -0.072 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.190 5.190 3 C -0.027 4.027 4 N -0.254 5.254 5 C -0.121 4.121 6 C -0.085 4.085 7 C -0.159 4.159 8 C 0.020 3.980 9 C -0.269 4.269 10 C -0.060 4.060 11 C -0.307 4.307 12 C 0.095 3.905 13 C -0.476 4.476 14 H 0.114 0.886 15 C -0.203 4.203 16 N -0.365 5.365 17 Si 0.811 3.189 18 H -0.175 1.175 19 H -0.190 1.190 20 H -0.190 1.190 21 N -0.234 5.234 22 C -0.033 4.033 23 C -0.169 4.169 24 C -0.064 4.064 25 H 0.102 0.898 26 H 0.141 0.859 27 H 0.096 0.904 28 H 0.275 0.725 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.152 0.848 32 H 0.134 0.866 33 H 0.094 0.906 34 H 0.151 0.849 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.286 12.698 -0.067 12.763 hybrid contribution -0.172 -0.951 0.012 0.966 sum -1.459 11.747 -0.055 11.837 Atomic orbital electron populations 1.22262 0.73829 1.06036 1.04574 1.45520 1.08580 1.04613 1.60314 1.26168 0.84394 0.94726 0.97428 1.70291 1.20399 1.10794 1.23931 1.19344 0.92857 0.90800 1.09079 1.20060 0.97767 0.91190 0.99501 1.20858 0.96328 0.94963 1.03714 1.18529 0.92849 0.91144 0.95511 1.19242 0.94530 0.91833 1.21253 1.21036 0.98273 0.92498 0.94216 1.21634 0.97066 0.96195 1.15843 1.19140 0.88165 0.94297 0.88942 1.20160 0.94199 0.91563 1.41635 0.88611 1.27118 0.95507 1.05144 0.92525 1.70222 1.00755 1.37894 1.27596 0.85018 0.79611 0.75377 0.78901 1.17451 1.19004 1.18996 1.68742 1.34295 1.01284 1.19118 1.23066 0.94678 0.92906 0.92695 1.19893 0.99162 0.88767 1.09056 1.18874 0.91761 0.89644 1.06139 0.89781 0.85893 0.90444 0.72509 0.84155 0.84232 0.84773 0.86618 0.90642 0.84927 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 11.18 127.77 1.43 2.47 16 2 N -0.50 -11.89 3.21 -543.67 -1.74 -13.63 16 3 C 0.26 5.60 12.50 180.05 2.25 7.85 16 4 N -0.53 -16.34 11.27 -191.71 -2.16 -18.50 16 5 C 0.00 -0.12 7.23 39.61 0.29 0.17 16 6 C -0.07 -2.14 10.03 22.24 0.22 -1.91 16 7 C -0.14 -4.72 9.36 22.26 0.21 -4.51 16 8 C 0.02 0.86 5.88 -19.99 -0.12 0.75 16 9 C -0.26 -11.68 5.92 -19.76 -0.12 -11.80 16 10 C -0.04 -1.61 9.46 22.41 0.21 -1.40 16 11 C -0.29 -13.70 9.76 22.54 0.22 -13.48 16 12 C 0.22 11.90 6.55 40.15 0.26 12.16 16 13 C -0.45 -23.48 9.11 23.37 0.21 -23.26 16 14 H 0.10 4.65 7.85 -2.91 -0.02 4.63 16 15 C 0.02 1.00 5.50 85.30 0.47 1.46 16 16 N -0.74 -39.05 11.44 21.84 0.25 -38.80 16 17 Si 0.99 36.47 29.56 68.60 2.03 38.50 16 18 H -0.25 -8.83 7.11 99.48 0.71 -8.13 16 19 H -0.27 -9.41 7.11 99.48 0.71 -8.71 16 20 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 21 N -0.52 -28.96 7.83 -188.18 -1.47 -30.44 16 22 C 0.13 6.52 10.60 85.26 0.90 7.42 16 23 C -0.15 -5.28 9.43 22.60 0.21 -5.06 16 24 C 0.05 1.48 6.87 38.80 0.27 1.74 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.26 2.42 8.06 -2.91 -0.02 2.40 16 29 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 30 H 0.14 4.20 6.21 -2.91 -0.02 4.18 16 31 H 0.13 4.79 6.27 -2.91 -0.02 4.77 16 32 H 0.12 5.04 8.06 -2.91 -0.02 5.01 16 33 H 0.28 13.26 8.29 -92.71 -0.77 12.49 16 34 H 0.13 5.85 6.19 -2.91 -0.02 5.83 16 35 H 0.12 4.12 6.20 -2.91 -0.02 4.11 16 Total: -1.00 -70.50 303.61 4.95 -65.55 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 1.13 Total: 24.72 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 6.92 Total: -27.41 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -5.13 Total: -101.37 kcal Atomic # 14 Polarization: 36.47 SS G_CDS: 2.03 Total: 38.50 kcal Total: -70.50 4.95 -65.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240321513.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.823 kcal (2) G-P(sol) polarization free energy of solvation -70.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds