Wall clock time and date at job start Tue Mar 31 2020 00:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38956 * 119.23153 * 2 1 4 4 C 1.36832 * 119.82037 * 179.97438 * 3 2 1 5 5 C 1.41178 * 118.39681 * 0.02562 * 4 3 2 6 6 C 1.40781 * 120.72405 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99978 * 149.07133 * 6 5 4 8 8 C 1.40103 * 120.00304 * 329.07127 * 6 5 4 9 9 N 1.30749 * 119.99841 * 348.68398 * 8 6 5 10 10 Si 1.86804 * 120.00207 * 168.68885 * 8 6 5 11 11 H 1.48504 * 109.46929 * 59.99470 * 10 8 6 12 12 H 1.48495 * 109.47173 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46837 * 300.00055 * 10 8 6 14 14 C 1.41963 * 118.54570 * 359.97438 * 5 4 3 15 15 C 1.47520 * 119.99869 * 179.97438 * 14 5 4 16 16 C 1.39915 * 121.14605 * 310.97114 * 15 14 5 17 17 C 1.38176 * 119.20434 * 179.97438 * 16 15 14 18 18 N 1.31751 * 121.79801 * 0.02884 * 17 16 15 19 19 C 1.32552 * 122.07187 * 359.95125 * 18 17 16 20 20 N 1.37525 * 133.13882 * 180.02562 * 19 18 17 21 21 H 0.97000 * 125.00491 * 0.04620 * 20 19 18 22 22 C 1.36750 * 109.98420 * 180.02562 * 20 19 18 23 23 C 1.34555 * 109.86486 * 359.97438 * 22 20 19 24 24 C 1.40818 * 119.91709 * 0.04647 * 19 18 17 25 25 N 1.31652 * 119.24290 * 180.25057 * 2 1 3 26 26 H 1.09000 * 109.47314 * 90.00388 * 1 2 3 27 27 H 1.09003 * 109.46783 * 210.00258 * 1 2 3 28 28 H 1.08997 * 109.47703 * 330.00142 * 1 2 3 29 29 H 1.07996 * 120.09374 * 359.97438 * 3 2 1 30 30 H 1.08000 * 120.80270 * 179.97438 * 4 3 2 31 31 H 0.97001 * 120.00079 * 179.97438 * 9 8 6 32 32 H 1.07994 * 120.39954 * 0.02562 * 16 15 14 33 33 H 1.08008 * 119.10359 * 180.02562 * 17 16 15 34 34 H 1.08003 * 125.06567 * 180.26959 * 22 20 19 35 35 H 1.08008 * 126.55289 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2126 0.0000 4 6 3.5538 1.2267 0.0005 5 6 4.2379 -0.0083 0.0005 6 6 5.6451 -0.0510 0.0005 7 1 6.1605 -0.8693 0.4812 8 6 6.3769 0.9681 -0.6231 9 7 5.7683 1.8346 -1.3900 10 14 8.2223 1.0887 -0.3590 11 1 8.8725 -0.1603 -0.8307 12 1 8.7573 2.2439 -1.1233 13 1 8.5040 1.2778 1.0868 14 6 3.4758 -1.2060 0.0005 15 6 4.1577 -2.5141 -0.0001 16 6 5.1882 -2.7927 -0.9047 17 6 5.7997 -4.0313 -0.8695 18 7 5.4388 -4.9594 -0.0069 19 6 4.4710 -4.7609 0.8768 20 7 3.9195 -5.5484 1.8602 21 1 4.1932 -6.4562 2.0649 22 6 2.9288 -4.8628 2.5072 23 6 2.8045 -3.6316 1.9787 24 6 3.7937 -3.5268 0.9113 25 7 2.1501 -1.1487 -0.0050 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5138 29 1 1.6346 2.1415 -0.0004 30 1 4.0973 2.1599 0.0001 31 1 6.2749 2.5404 -1.8215 32 1 5.5024 -2.0483 -1.6212 33 1 6.5952 -4.2444 -1.5683 34 1 2.3377 -5.2501 3.3239 35 1 2.1060 -2.8673 2.2859 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240412223.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:32 Heat of formation + Delta-G solvation = 88.734074 kcal Electronic energy + Delta-G solvation = -20818.745826 eV Core-core repulsion = 17781.432381 eV Total energy + Delta-G solvation = -3037.313446 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.82542 -38.59896 -37.02230 -34.36807 -33.05915 -31.05088 -30.32892 -29.38938 -28.44484 -27.72865 -24.73635 -23.16291 -21.90798 -21.19249 -20.58335 -19.82086 -17.58145 -17.33521 -16.08648 -15.59906 -15.22161 -14.66782 -14.37088 -14.12400 -13.95142 -13.52442 -13.18434 -12.68618 -12.50010 -12.42983 -11.98712 -11.77221 -11.64668 -11.51636 -11.49115 -11.19196 -11.03785 -11.00728 -10.62422 -9.99690 -9.56868 -9.43964 -8.78363 -8.34149 -8.09743 -7.79586 -7.65343 -7.21412 -6.91372 -4.55796 1.52319 2.09044 2.56960 2.89437 2.97584 3.01198 3.11643 3.28454 3.30333 3.79351 4.47059 4.63131 5.11330 5.22653 5.30150 5.41803 5.64924 5.86140 5.95751 6.00171 6.05657 6.26045 6.38188 6.42351 6.44169 6.48084 6.55857 6.75450 6.88542 6.96452 6.99551 7.08901 7.21137 7.32526 7.57508 7.62373 7.78241 7.82501 7.86317 8.31970 8.54626 8.61340 8.66262 9.53329 9.96884 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.008174 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.623405 B = 3424.709528 C = 5117.922888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.005 4.005 3 C -0.142 4.142 4 C -0.122 4.122 5 C 0.090 3.910 6 C -0.438 4.438 7 H 0.086 0.914 8 C 0.075 3.925 9 N -0.789 5.789 10 Si 0.911 3.089 11 H -0.260 1.260 12 H -0.277 1.277 13 H -0.262 1.262 14 C 0.011 3.989 15 C 0.119 3.881 16 C -0.184 4.184 17 C 0.130 3.870 18 N -0.526 5.526 19 C 0.278 3.722 20 N -0.590 5.590 21 H 0.411 0.589 22 C 0.027 3.973 23 C -0.162 4.162 24 C -0.143 4.143 25 N -0.439 5.439 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.099 0.901 30 H 0.125 0.875 31 H 0.286 0.714 32 H 0.142 0.858 33 H 0.152 0.848 34 H 0.169 0.831 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.746 -5.344 3.585 6.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.148 4.148 3 C -0.162 4.162 4 C -0.148 4.148 5 C 0.086 3.914 6 C -0.467 4.467 7 H 0.104 0.896 8 C -0.144 4.144 9 N -0.414 5.414 10 Si 0.734 3.266 11 H -0.184 1.184 12 H -0.201 1.201 13 H -0.187 1.187 14 C -0.126 4.126 15 C 0.110 3.890 16 C -0.207 4.207 17 C -0.033 4.033 18 N -0.241 5.241 19 C 0.045 3.955 20 N -0.198 5.198 21 H 0.247 0.753 22 C -0.098 4.098 23 C -0.187 4.187 24 C -0.150 4.150 25 N -0.147 5.147 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.143 0.857 31 H 0.097 0.903 32 H 0.160 0.840 33 H 0.169 0.831 34 H 0.186 0.814 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.767 -6.830 3.501 7.876 hybrid contribution 1.042 1.477 0.092 1.810 sum -0.725 -5.353 3.593 6.488 Atomic orbital electron populations 1.20287 0.91466 1.00860 1.00551 1.20287 0.94892 0.88490 1.11133 1.21285 0.95426 0.97199 1.02317 1.21374 0.92603 0.98691 1.02105 1.18301 0.94084 0.90598 0.88462 1.19512 0.90964 1.06581 1.29690 0.89606 1.25977 1.01624 0.93904 0.92899 1.69718 1.38972 1.12290 1.20377 0.86292 0.81354 0.79065 0.79841 1.18422 1.20139 1.18669 1.19286 0.88476 0.90804 1.14043 1.18208 0.91018 0.90104 0.89714 1.22066 0.98845 0.98112 1.01660 1.22143 0.97735 0.88730 0.94668 1.66281 1.15731 1.35597 1.06486 1.18334 0.94913 0.89620 0.92648 1.41350 1.32744 1.15241 1.30434 0.75266 1.21694 0.94411 0.93425 1.00226 1.21607 1.01795 0.96847 0.98498 1.19896 1.00474 0.94507 1.00134 1.66877 1.09362 1.29126 1.09369 0.93164 0.92532 0.92883 0.88254 0.85700 0.90317 0.84041 0.83066 0.81392 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.15 36.00 0.37 -0.94 16 2 C -0.01 -0.12 6.79 -82.40 -0.56 -0.68 16 3 C -0.14 -3.18 9.64 -39.82 -0.38 -3.56 16 4 C -0.12 -2.99 8.70 -38.98 -0.34 -3.33 16 5 C 0.09 2.29 5.53 -106.39 -0.59 1.71 16 6 C -0.44 -10.79 7.00 -37.92 -0.27 -11.06 16 7 H 0.09 2.11 6.85 -52.49 -0.36 1.75 16 8 C 0.08 1.75 5.25 -17.31 -0.09 1.66 16 9 N -0.79 -18.87 11.06 55.56 0.61 -18.26 16 10 Si 0.91 17.65 29.58 -169.99 -5.03 12.62 16 11 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 12 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 13 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 14 C 0.01 0.28 6.36 -82.28 -0.52 -0.24 16 15 C 0.12 2.74 5.13 -104.43 -0.54 2.20 16 16 C -0.18 -3.88 8.19 -38.98 -0.32 -4.20 16 17 C 0.13 2.43 11.12 -17.61 -0.20 2.23 16 18 N -0.53 -10.27 10.36 -12.35 -0.13 -10.39 16 19 C 0.28 5.41 8.43 -155.67 -1.31 4.10 16 20 N -0.59 -8.98 6.05 -12.10 -0.07 -9.06 16 21 H 0.41 4.83 8.96 -40.82 -0.37 4.46 16 22 C 0.03 0.39 11.83 -16.66 -0.20 0.19 16 23 C -0.16 -2.99 10.97 -37.82 -0.41 -3.40 16 24 C -0.14 -3.05 6.17 -104.80 -0.65 -3.70 16 25 N -0.44 -10.59 10.12 -5.48 -0.06 -10.64 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 29 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 30 H 0.13 3.09 6.51 -52.49 -0.34 2.75 16 31 H 0.29 6.24 8.29 -40.82 -0.34 5.90 16 32 H 0.14 3.02 7.30 -52.49 -0.38 2.63 16 33 H 0.15 2.27 8.06 -52.48 -0.42 1.85 16 34 H 0.17 1.64 8.06 -52.48 -0.42 1.22 16 35 H 0.14 2.66 8.06 -52.48 -0.42 2.24 16 LS Contribution 304.25 15.07 4.58 4.58 Total: -1.00 -28.98 304.25 -9.63 -38.61 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -3.54 Total: 11.55 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -6.01 Total: -19.01 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.36 Total: -48.35 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.98 -9.63 -38.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240412223.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.347 kcal (2) G-P(sol) polarization free energy of solvation -28.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds