Wall clock time and date at job start Tue Mar 31 2020 00:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38956 * 119.23153 * 2 1 4 4 C 1.36832 * 119.82037 * 179.97438 * 3 2 1 5 5 C 1.41178 * 118.39681 * 0.02562 * 4 3 2 6 6 C 1.40781 * 120.72405 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99978 * 149.07133 * 6 5 4 8 8 C 1.40103 * 120.00304 * 329.07127 * 6 5 4 9 9 N 1.30749 * 119.99841 * 348.68398 * 8 6 5 10 10 Si 1.86804 * 120.00207 * 168.68885 * 8 6 5 11 11 H 1.48504 * 109.46929 * 59.99470 * 10 8 6 12 12 H 1.48495 * 109.47173 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46837 * 300.00055 * 10 8 6 14 14 C 1.41963 * 118.54570 * 359.97438 * 5 4 3 15 15 C 1.47520 * 119.99869 * 179.97438 * 14 5 4 16 16 C 1.39915 * 121.14605 * 310.97114 * 15 14 5 17 17 C 1.38176 * 119.20434 * 179.97438 * 16 15 14 18 18 N 1.31751 * 121.79801 * 0.02884 * 17 16 15 19 19 C 1.32552 * 122.07187 * 359.95125 * 18 17 16 20 20 N 1.37525 * 133.13882 * 180.02562 * 19 18 17 21 21 H 0.97000 * 125.00491 * 0.04620 * 20 19 18 22 22 C 1.36750 * 109.98420 * 180.02562 * 20 19 18 23 23 C 1.34555 * 109.86486 * 359.97438 * 22 20 19 24 24 C 1.40818 * 119.91709 * 0.04647 * 19 18 17 25 25 N 1.31652 * 119.24290 * 180.25057 * 2 1 3 26 26 H 1.09000 * 109.47314 * 90.00388 * 1 2 3 27 27 H 1.09003 * 109.46783 * 210.00258 * 1 2 3 28 28 H 1.08997 * 109.47703 * 330.00142 * 1 2 3 29 29 H 1.07996 * 120.09374 * 359.97438 * 3 2 1 30 30 H 1.08000 * 120.80270 * 179.97438 * 4 3 2 31 31 H 0.97001 * 120.00079 * 179.97438 * 9 8 6 32 32 H 1.07994 * 120.39954 * 0.02562 * 16 15 14 33 33 H 1.08008 * 119.10359 * 180.02562 * 17 16 15 34 34 H 1.08003 * 125.06567 * 180.26959 * 22 20 19 35 35 H 1.08008 * 126.55289 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2126 0.0000 4 6 3.5538 1.2267 0.0005 5 6 4.2379 -0.0083 0.0005 6 6 5.6451 -0.0510 0.0005 7 1 6.1605 -0.8693 0.4812 8 6 6.3769 0.9681 -0.6231 9 7 5.7683 1.8346 -1.3900 10 14 8.2223 1.0887 -0.3590 11 1 8.8725 -0.1603 -0.8307 12 1 8.7573 2.2439 -1.1233 13 1 8.5040 1.2778 1.0868 14 6 3.4758 -1.2060 0.0005 15 6 4.1577 -2.5141 -0.0001 16 6 5.1882 -2.7927 -0.9047 17 6 5.7997 -4.0313 -0.8695 18 7 5.4388 -4.9594 -0.0069 19 6 4.4710 -4.7609 0.8768 20 7 3.9195 -5.5484 1.8602 21 1 4.1932 -6.4562 2.0649 22 6 2.9288 -4.8628 2.5072 23 6 2.8045 -3.6316 1.9787 24 6 3.7937 -3.5268 0.9113 25 7 2.1501 -1.1487 -0.0050 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5138 29 1 1.6346 2.1415 -0.0004 30 1 4.0973 2.1599 0.0001 31 1 6.2749 2.5404 -1.8215 32 1 5.5024 -2.0483 -1.6212 33 1 6.5952 -4.2444 -1.5683 34 1 2.3377 -5.2501 3.3239 35 1 2.1060 -2.8673 2.2859 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240412223.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:31 Heat of formation + Delta-G solvation = 72.594863 kcal Electronic energy + Delta-G solvation = -20819.445675 eV Core-core repulsion = 17781.432381 eV Total energy + Delta-G solvation = -3038.013294 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.25587 -40.34668 -38.49018 -36.13379 -34.66993 -32.79286 -31.95045 -30.87434 -29.87825 -29.41356 -26.40889 -24.80572 -23.42515 -22.84062 -22.26106 -21.23732 -19.27958 -18.93275 -17.53910 -17.27755 -16.76771 -16.36937 -15.82442 -15.76103 -15.47040 -15.15585 -14.78538 -14.17365 -13.99678 -13.83861 -13.62388 -13.48288 -13.19456 -13.03059 -13.00192 -12.79277 -12.66108 -12.58130 -12.20146 -11.75242 -11.21360 -11.10461 -10.35101 -10.13611 -9.89549 -9.36149 -9.26152 -8.78706 -8.60495 -6.40034 -0.03406 0.53739 0.84522 1.12600 1.37919 1.48279 1.50976 1.90563 1.99678 2.17354 2.71032 3.05493 3.60038 3.65664 3.86511 4.06139 4.12160 4.37498 4.39990 4.50487 4.62046 4.66474 4.81829 4.92235 4.97033 4.99318 5.07779 5.08167 5.20052 5.28359 5.35332 5.56855 5.62049 5.74035 5.83062 5.97443 6.06503 6.14751 6.48659 6.58611 6.72790 6.79774 7.19452 7.72943 8.24466 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.008174 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.623405 B = 3424.709528 C = 5117.922888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.014 4.014 3 C -0.146 4.146 4 C -0.143 4.143 5 C 0.061 3.939 6 C -0.459 4.459 7 H 0.075 0.925 8 C 0.042 3.958 9 N -0.818 5.818 10 Si 0.975 3.025 11 H -0.255 1.255 12 H -0.264 1.264 13 H -0.264 1.264 14 C 0.000 4.000 15 C 0.081 3.919 16 C -0.192 4.192 17 C 0.129 3.871 18 N -0.522 5.522 19 C 0.259 3.741 20 N -0.571 5.571 21 H 0.432 0.568 22 C 0.079 3.921 23 C -0.213 4.213 24 C -0.165 4.165 25 N -0.456 5.456 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.115 0.885 31 H 0.293 0.707 32 H 0.127 0.873 33 H 0.188 0.812 34 H 0.228 0.772 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.036 -6.978 4.658 8.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.156 4.156 3 C -0.166 4.166 4 C -0.169 4.169 5 C 0.056 3.944 6 C -0.488 4.488 7 H 0.093 0.907 8 C -0.174 4.174 9 N -0.443 5.443 10 Si 0.795 3.205 11 H -0.179 1.179 12 H -0.188 1.188 13 H -0.188 1.188 14 C -0.137 4.137 15 C 0.072 3.928 16 C -0.215 4.215 17 C -0.034 4.034 18 N -0.237 5.237 19 C 0.026 3.974 20 N -0.181 5.181 21 H 0.272 0.728 22 C -0.046 4.046 23 C -0.238 4.238 24 C -0.173 4.173 25 N -0.164 5.164 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.147 0.853 30 H 0.133 0.867 31 H 0.104 0.896 32 H 0.145 0.855 33 H 0.205 0.795 34 H 0.244 0.756 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.068 -8.493 4.578 9.867 hybrid contribution 0.985 1.883 -0.180 2.133 sum -1.084 -6.610 4.397 8.012 Atomic orbital electron populations 1.20348 0.87943 1.02516 1.01790 1.21132 0.97318 0.88009 1.09191 1.21610 0.94840 0.98727 1.01387 1.21420 0.93745 0.98136 1.03590 1.18635 0.94926 0.91330 0.89512 1.19512 0.91023 1.07297 1.30947 0.90682 1.26685 1.05613 0.93090 0.92049 1.69757 1.40692 1.12898 1.20985 0.85335 0.76107 0.79452 0.79566 1.17934 1.18832 1.18812 1.19670 0.88933 0.91674 1.13470 1.18397 0.92419 0.90323 0.91677 1.22046 0.99015 0.98929 1.01481 1.22611 0.98094 0.87630 0.95028 1.66408 1.15505 1.35383 1.06393 1.18605 0.95121 0.89997 0.93699 1.41432 1.31955 1.15863 1.28819 0.72753 1.22477 0.92036 0.91289 0.98821 1.21645 1.03120 0.99052 1.00015 1.20245 1.01579 0.94824 1.00618 1.66997 1.09272 1.30005 1.10170 0.91981 0.92011 0.90107 0.85274 0.86708 0.89618 0.85498 0.79479 0.75562 0.84895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.30 10.15 71.24 0.72 -1.58 16 2 C -0.01 -0.62 6.79 42.76 0.29 -0.33 16 3 C -0.15 -6.60 9.64 22.11 0.21 -6.39 16 4 C -0.14 -7.32 8.70 22.66 0.20 -7.12 16 5 C 0.06 3.24 5.53 -21.01 -0.12 3.13 16 6 C -0.46 -23.79 7.00 23.34 0.16 -23.63 16 7 H 0.08 3.92 6.85 -2.91 -0.02 3.90 16 8 C 0.04 2.02 5.25 85.31 0.45 2.47 16 9 N -0.82 -40.49 11.06 21.85 0.24 -40.25 16 10 Si 0.97 36.79 29.58 68.60 2.03 38.82 16 11 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 12 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 13 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 14 C 0.00 -0.02 6.36 42.39 0.27 0.25 16 15 C 0.08 3.89 5.13 -19.74 -0.10 3.79 16 16 C -0.19 -8.43 8.19 22.66 0.19 -8.24 16 17 C 0.13 4.82 11.12 84.69 0.94 5.76 16 18 N -0.52 -19.81 10.36 -192.97 -2.00 -21.81 16 19 C 0.26 9.80 8.43 133.93 1.13 10.93 16 20 N -0.57 -15.55 6.05 -192.20 -1.16 -16.72 16 21 H 0.43 8.33 8.96 -92.71 -0.83 7.50 16 22 C 0.08 2.01 11.83 83.08 0.98 2.99 16 23 C -0.21 -7.73 10.97 23.41 0.26 -7.47 16 24 C -0.17 -7.13 6.17 -19.98 -0.12 -7.25 16 25 N -0.46 -22.62 10.12 -171.26 -1.73 -24.36 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.08 2.25 8.07 -2.39 -0.02 2.23 16 29 H 0.13 4.92 8.06 -2.91 -0.02 4.89 16 30 H 0.12 5.97 6.51 -2.91 -0.02 5.95 16 31 H 0.29 13.10 8.29 -92.71 -0.77 12.33 16 32 H 0.13 5.79 7.30 -2.91 -0.02 5.77 16 33 H 0.19 5.39 8.06 -2.91 -0.02 5.36 16 34 H 0.23 3.01 8.06 -2.91 -0.02 2.99 16 35 H 0.13 5.01 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -66.83 304.25 3.14 -63.69 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: 0.31 Total: 33.32 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: 5.46 Total: -32.69 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -4.65 Total: -103.13 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.82 kcal Total: -66.83 3.14 -63.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240412223.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.282 kcal (2) G-P(sol) polarization free energy of solvation -66.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds