Wall clock time and date at job start Tue Mar 31 2020 00:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31163 * 119.79383 * 2 1 4 4 C 1.33170 * 121.71576 * 179.97438 * 3 2 1 5 5 C 1.47582 * 119.46601 * 179.97438 * 4 3 2 6 6 C 1.41753 * 120.38374 * 185.00435 * 5 4 3 7 7 C 1.34497 * 120.12665 * 179.97438 * 6 5 4 8 8 N 1.36758 * 120.97303 * 0.02562 * 7 6 5 9 9 C 1.36718 * 132.26712 * 179.97438 * 8 7 6 10 10 C 1.35438 * 107.20572 * 180.02562 * 9 8 7 11 11 N 1.33221 * 108.64786 * 0.25735 * 10 9 8 12 12 C 1.32784 * 109.15388 * 359.57009 * 11 10 9 13 13 C 1.38769 * 120.38638 * 4.98076 * 5 4 3 14 14 C 1.40088 * 121.06851 * 0.26116 * 4 3 2 15 15 C 1.36498 * 119.46206 * 359.45778 * 14 4 3 16 16 C 1.41035 * 119.79545 * 179.97438 * 2 1 3 17 17 C 1.40928 * 120.54218 * 359.97438 * 16 2 1 18 18 H 1.08000 * 119.99628 * 329.60568 * 17 16 2 19 19 C 1.39959 * 120.00046 * 149.59933 * 17 16 2 20 20 N 1.30826 * 120.00118 * 162.38592 * 19 17 16 21 21 Si 1.86809 * 119.99963 * 342.38574 * 19 17 16 22 22 H 1.48500 * 109.46785 * 95.36120 * 21 19 17 23 23 H 1.48503 * 109.46890 * 215.36106 * 21 19 17 24 24 H 1.48496 * 109.47045 * 335.36422 * 21 19 17 25 25 H 1.08991 * 109.47354 * 89.99946 * 1 2 3 26 26 H 1.08997 * 109.47405 * 210.00607 * 1 2 3 27 27 H 1.09005 * 109.47037 * 329.99918 * 1 2 3 28 28 H 1.07992 * 119.93597 * 0.02562 * 6 5 4 29 29 H 1.08004 * 119.51144 * 180.02562 * 7 6 5 30 30 H 1.07992 * 126.39477 * 0.02938 * 9 8 7 31 31 H 1.07999 * 125.67165 * 180.02562 * 10 9 8 32 32 H 1.07996 * 120.46130 * 0.04228 * 13 5 4 33 33 H 1.08006 * 120.26719 * 179.71811 * 14 4 3 34 34 H 1.07998 * 120.78841 * 180.26086 * 15 14 4 35 35 H 0.96994 * 119.99958 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1383 0.0000 4 6 3.4897 1.1829 0.0005 5 6 4.1721 2.4915 -0.0001 6 6 5.5838 2.5638 -0.1062 7 6 6.2004 3.7591 -0.1068 8 7 5.4849 4.9201 -0.0053 9 6 5.8625 6.2339 0.0178 10 6 4.7337 6.9732 0.1350 11 7 3.6885 6.1490 0.1890 12 6 4.1170 4.8954 0.0999 13 6 3.4393 3.6654 0.1028 14 6 4.2525 0.0079 -0.0044 15 6 3.6212 -1.2023 0.0014 16 6 2.2078 -1.2239 0.0005 17 6 1.5104 -2.4485 0.0016 18 1 0.5423 -2.5181 0.4753 19 6 2.0722 -3.5744 -0.6112 20 7 1.6184 -4.7682 -0.3280 21 14 3.4703 -3.3724 -1.8336 22 1 4.7683 -3.5532 -1.1353 23 1 3.3399 -4.3900 -2.9073 24 1 3.4141 -2.0136 -2.4298 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 6.1653 1.6574 -0.1877 29 1 7.2765 3.8026 -0.1886 30 1 6.8722 6.6116 -0.0455 31 1 4.6889 8.0513 0.1812 32 1 2.3630 3.6334 0.1849 33 1 5.3313 0.0593 -0.0085 34 1 4.1882 -2.1215 0.0021 35 1 2.0075 -5.5485 -0.7530 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240503567.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:26 Heat of formation + Delta-G solvation = 110.048306 kcal Electronic energy + Delta-G solvation = -20147.405505 eV Core-core repulsion = 17111.016314 eV Total energy + Delta-G solvation = -3036.389191 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.41578 -39.09500 -36.95998 -34.43531 -33.38738 -32.02600 -31.39341 -30.01623 -28.43159 -27.31994 -25.40707 -23.31187 -22.63043 -21.58422 -21.22276 -20.22478 -17.86344 -17.44132 -16.41346 -16.34884 -15.56822 -15.29081 -15.14824 -14.16626 -14.02289 -13.77638 -13.56098 -13.43763 -13.12461 -12.92291 -12.19689 -11.94395 -11.85631 -11.76866 -11.44836 -11.39874 -11.25084 -11.00349 -10.59591 -10.32712 -10.05958 -9.85998 -9.69982 -8.68862 -8.63333 -8.34214 -8.07757 -7.35125 -7.20306 -4.77390 0.93988 1.36682 2.30559 2.52260 2.84491 2.85397 2.97716 3.05802 3.14447 3.67571 3.84215 4.37258 4.52363 4.60229 4.87632 5.00090 5.16737 5.33998 5.52559 5.55405 5.65050 5.78901 5.90684 5.98275 6.11774 6.27145 6.33855 6.52439 6.53210 6.60969 6.66365 6.73723 6.81855 6.87166 7.08623 7.26120 7.31823 7.38370 7.56361 7.93065 8.14415 8.17940 8.33834 9.24094 9.63168 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.032830 B = 0.004288 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.683511 B = 6528.324033 C = 7208.991437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.038 3.962 3 N -0.436 5.436 4 C -0.011 4.011 5 C 0.031 3.969 6 C -0.128 4.128 7 C 0.042 3.958 8 N -0.366 5.366 9 C -0.126 4.126 10 C 0.029 3.971 11 N -0.510 5.510 12 C 0.241 3.759 13 C -0.098 4.098 14 C -0.094 4.094 15 C -0.216 4.216 16 C 0.052 3.948 17 C -0.404 4.404 18 H 0.105 0.895 19 C 0.080 3.920 20 N -0.780 5.780 21 Si 0.913 3.087 22 H -0.266 1.266 23 H -0.284 1.284 24 H -0.243 1.243 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.150 0.850 29 H 0.158 0.842 30 H 0.174 0.826 31 H 0.174 0.826 32 H 0.156 0.844 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.639 8.686 -1.105 12.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.112 4.112 3 N -0.144 5.144 4 C -0.142 4.142 5 C 0.024 3.976 6 C -0.149 4.149 7 C -0.080 4.080 8 N -0.038 5.038 9 C -0.257 4.257 10 C -0.124 4.124 11 N -0.230 5.230 12 C -0.001 4.001 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.240 4.240 16 C 0.046 3.954 17 C -0.431 4.431 18 H 0.123 0.877 19 C -0.143 4.143 20 N -0.401 5.401 21 Si 0.739 3.261 22 H -0.191 1.191 23 H -0.211 1.211 24 H -0.166 1.166 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.168 0.832 29 H 0.176 0.824 30 H 0.192 0.808 31 H 0.191 0.809 32 H 0.174 0.826 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.428 9.475 -1.029 12.083 hybrid contribution 2.213 -1.222 -0.566 2.591 sum 9.641 8.252 -1.596 12.790 Atomic orbital electron populations 1.20331 0.90219 1.01477 1.01311 1.21070 0.95529 0.87362 1.07221 1.66790 1.08396 1.30386 1.08801 1.18398 0.89106 0.89827 1.16860 1.18579 0.91218 0.92246 0.95526 1.20926 0.94748 0.96704 1.02504 1.21305 0.97586 0.83723 1.05386 1.42873 1.09110 1.05997 1.45790 1.22519 1.01371 0.81108 1.20726 1.22421 0.87791 0.99654 1.02484 1.70746 1.30080 0.97767 1.24419 1.21010 0.79880 0.94848 1.04341 1.20531 1.01162 0.86102 1.04116 1.21187 0.98659 0.93072 0.98468 1.20992 0.94700 0.96663 1.11671 1.18529 0.91977 0.94276 0.90599 1.19662 1.05311 0.90856 1.27317 0.87725 1.26340 0.97157 0.94149 0.96662 1.69663 1.37149 0.99520 1.33793 0.86246 0.79911 0.80303 0.79678 1.19142 1.21085 1.16574 0.92370 0.91238 0.92727 0.83242 0.82426 0.80835 0.80890 0.82604 0.87535 0.87094 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 9.79 36.01 0.35 -1.11 16 2 C 0.04 0.85 6.86 -81.82 -0.56 0.29 16 3 N -0.44 -9.78 9.34 -5.42 -0.05 -9.83 16 4 C -0.01 -0.23 6.73 -82.78 -0.56 -0.79 16 5 C 0.03 0.57 5.91 -104.55 -0.62 -0.05 16 6 C -0.13 -1.85 9.34 -39.56 -0.37 -2.21 16 7 C 0.04 0.54 10.91 -16.68 -0.18 0.36 16 8 N -0.37 -5.57 2.95 -62.70 -0.18 -5.76 16 9 C -0.13 -1.63 11.76 -16.37 -0.19 -1.83 16 10 C 0.03 0.42 11.83 -17.95 -0.21 0.20 16 11 N -0.51 -9.26 11.31 -12.82 -0.15 -9.40 16 12 C 0.24 4.37 7.79 -155.91 -1.21 3.16 16 13 C -0.10 -1.84 9.68 -38.56 -0.37 -2.22 16 14 C -0.09 -1.88 9.39 -39.52 -0.37 -2.25 16 15 C -0.22 -4.75 7.20 -39.02 -0.28 -5.03 16 16 C 0.05 1.21 5.10 -106.63 -0.54 0.66 16 17 C -0.40 -9.64 8.91 -37.92 -0.34 -9.98 16 18 H 0.11 2.55 6.55 -52.49 -0.34 2.21 16 19 C 0.08 1.86 5.42 -17.34 -0.09 1.76 16 20 N -0.78 -18.38 13.93 55.55 0.77 -17.60 16 21 Si 0.91 18.58 24.53 -169.99 -4.17 14.41 16 22 H -0.27 -5.18 6.71 56.52 0.38 -4.80 16 23 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.24 -5.19 6.85 56.52 0.39 -4.80 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.07 1.31 6.31 -51.93 -0.33 0.98 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.15 1.78 6.24 -52.49 -0.33 1.46 16 29 H 0.16 1.37 8.06 -52.48 -0.42 0.95 16 30 H 0.17 1.54 8.06 -52.49 -0.42 1.11 16 31 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.16 3.08 7.55 -52.49 -0.40 2.68 16 33 H 0.11 1.74 6.20 -52.48 -0.33 1.42 16 34 H 0.11 2.35 4.84 -52.49 -0.25 2.10 16 35 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 LS Contribution 295.77 15.07 4.46 4.46 Total: -1.00 -28.09 295.77 -8.13 -36.22 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -3.26 Total: 6.54 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -5.55 Total: -19.03 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.39 Total: -42.59 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -4.17 Total: 14.41 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.09 -8.13 -36.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240503567.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.268 kcal (2) G-P(sol) polarization free energy of solvation -28.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds