Wall clock time and date at job start Tue Mar 31 2020 00:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38995 * 119.23304 * 2 1 4 4 C 1.36796 * 119.82910 * 179.76325 * 3 2 1 5 5 C 1.41185 * 118.40560 * 0.49787 * 4 3 2 6 6 C 1.40739 * 120.73393 * 179.72448 * 5 4 3 7 7 H 1.07996 * 120.00125 * 151.68021 * 6 5 4 8 8 C 1.40004 * 119.99743 * 331.68752 * 6 5 4 9 9 N 1.30806 * 119.99938 * 348.12473 * 8 6 5 10 10 Si 1.86802 * 119.99798 * 168.11894 * 8 6 5 11 11 H 1.48492 * 109.46959 * 60.00525 * 10 8 6 12 12 H 1.48503 * 109.46755 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47122 * 299.99882 * 10 8 6 14 14 C 1.41998 * 118.53970 * 359.75043 * 5 4 3 15 15 C 1.47416 * 120.01081 * 180.02562 * 14 5 4 16 16 C 1.41805 * 120.39138 * 316.21834 * 15 14 5 17 17 C 1.34468 * 120.12759 * 179.72612 * 16 15 14 18 18 N 1.36787 * 120.97849 * 0.54045 * 17 16 15 19 19 C 1.36688 * 132.25609 * 179.72215 * 18 17 16 20 20 C 1.35458 * 107.20905 * 180.02562 * 19 18 17 21 21 N 1.33201 * 108.64836 * 359.97438 * 20 19 18 22 22 C 1.32790 * 109.15392 * 0.02562 * 21 20 19 23 23 C 1.38853 * 120.39874 * 136.49731 * 15 14 5 24 24 N 1.31597 * 119.22765 * 180.27031 * 2 1 3 25 25 H 1.09002 * 109.47285 * 269.73091 * 1 2 3 26 26 H 1.09000 * 109.47567 * 149.72606 * 1 2 3 27 27 H 1.09008 * 109.46610 * 29.72909 * 1 2 3 28 28 H 1.07997 * 120.08985 * 0.02562 * 3 2 1 29 29 H 1.08003 * 120.79825 * 180.24376 * 4 3 2 30 30 H 0.97005 * 120.00248 * 180.02562 * 9 8 6 31 31 H 1.08005 * 119.93371 * 0.02562 * 16 15 14 32 32 H 1.07994 * 119.51408 * 180.25996 * 17 16 15 33 33 H 1.08003 * 126.39780 * 0.02562 * 19 18 17 34 34 H 1.07999 * 125.67098 * 180.02562 * 20 19 18 35 35 H 1.07998 * 120.46538 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.2129 0.0000 4 6 3.5537 1.2272 0.0049 5 6 4.2383 -0.0076 -0.0009 6 6 5.6450 -0.0501 -0.0021 7 1 6.1602 -0.8913 0.4376 8 6 6.3765 0.9982 -0.5731 9 7 5.7696 1.8961 -1.3055 10 14 8.2191 1.1146 -0.2889 11 1 8.8787 -0.1091 -0.8109 12 1 8.7546 2.3060 -0.9954 13 1 8.4886 1.2400 1.1660 14 6 3.4762 -1.2058 -0.0062 15 6 4.1576 -2.5130 -0.0118 16 6 5.2724 -2.7373 -0.8590 17 6 5.8934 -3.9299 -0.8558 18 7 5.4602 -4.9472 -0.0504 19 6 5.9034 -6.2272 0.1324 20 6 5.0981 -6.8019 1.0577 21 7 4.1844 -5.9109 1.4393 22 6 4.3819 -4.7749 0.7807 23 6 3.7120 -3.5411 0.8082 24 7 2.1496 -1.1484 -0.0054 25 1 -0.3634 -0.0048 1.0277 26 1 -0.3634 -0.8875 -0.5181 27 1 -0.3633 0.8925 -0.5097 28 1 1.6348 2.1418 0.0004 29 1 4.0970 2.1606 0.0089 30 1 6.2765 2.6223 -1.7015 31 1 5.6264 -1.9470 -1.5045 32 1 6.7441 -4.0886 -1.5019 33 1 6.7396 -6.6934 -0.3675 34 1 5.1833 -7.8137 1.4254 35 1 2.8619 -3.3941 1.4579 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240503904.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:29 Heat of formation + Delta-G solvation = 106.630747 kcal Electronic energy + Delta-G solvation = -20581.634439 eV Core-core repulsion = 17545.097051 eV Total energy + Delta-G solvation = -3036.537388 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.18561 -38.84762 -36.62248 -34.50220 -33.36004 -31.34610 -30.77087 -29.74676 -28.11966 -27.76761 -24.71931 -23.34713 -22.49384 -21.33641 -20.88549 -20.16514 -17.58229 -17.25028 -16.28016 -15.74077 -15.48697 -15.29891 -14.47618 -14.17272 -13.96092 -13.76981 -13.35428 -13.14094 -12.93102 -12.42235 -12.06594 -11.76096 -11.70318 -11.55047 -11.30176 -11.20705 -11.10642 -11.08065 -10.72034 -10.26613 -9.98717 -9.67810 -9.57192 -8.53769 -8.26460 -8.23187 -7.79400 -7.18034 -6.96901 -4.69758 1.26239 1.72357 2.46015 2.79108 2.87926 2.90142 3.01918 3.10556 3.34121 3.66038 4.12881 4.36435 4.75874 4.90773 5.12217 5.24096 5.41681 5.67485 5.75459 5.83333 5.91962 5.97893 6.16052 6.22086 6.33714 6.40634 6.45954 6.55405 6.63542 6.82444 6.84405 6.99013 7.02981 7.08510 7.12323 7.50736 7.56846 7.65594 7.74834 8.18425 8.33890 8.40850 8.48061 9.42428 9.81294 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.012975 B = 0.007338 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.446140 B = 3814.983829 C = 5732.993279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.000 4.000 3 C -0.141 4.141 4 C -0.121 4.121 5 C 0.088 3.912 6 C -0.440 4.440 7 H 0.088 0.912 8 C 0.074 3.926 9 N -0.783 5.783 10 Si 0.911 3.089 11 H -0.261 1.261 12 H -0.275 1.275 13 H -0.261 1.261 14 C 0.007 3.993 15 C 0.050 3.950 16 C -0.093 4.093 17 C 0.021 3.979 18 N -0.359 5.359 19 C -0.125 4.125 20 C 0.024 3.976 21 N -0.513 5.513 22 C 0.237 3.763 23 C -0.099 4.099 24 N -0.444 5.444 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.101 0.899 29 H 0.130 0.870 30 H 0.288 0.712 31 H 0.163 0.837 32 H 0.157 0.843 33 H 0.173 0.827 34 H 0.172 0.828 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.624 -4.237 -0.940 5.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.143 4.143 3 C -0.161 4.161 4 C -0.147 4.147 5 C 0.083 3.917 6 C -0.468 4.468 7 H 0.106 0.894 8 C -0.146 4.146 9 N -0.407 5.407 10 Si 0.735 3.265 11 H -0.185 1.185 12 H -0.200 1.200 13 H -0.185 1.185 14 C -0.130 4.130 15 C 0.043 3.957 16 C -0.114 4.114 17 C -0.100 4.100 18 N -0.031 5.031 19 C -0.257 4.257 20 C -0.129 4.129 21 N -0.233 5.233 22 C -0.005 4.005 23 C -0.120 4.120 24 N -0.152 5.152 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.147 0.853 30 H 0.099 0.901 31 H 0.180 0.820 32 H 0.174 0.826 33 H 0.190 0.810 34 H 0.189 0.811 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.653 -4.962 -0.558 5.260 hybrid contribution 2.118 1.120 -0.620 2.475 sum 3.771 -3.842 -1.178 5.511 Atomic orbital electron populations 1.20315 0.91316 1.01078 1.00663 1.20306 0.94985 0.88412 1.10600 1.21314 0.95455 0.97255 1.02093 1.21452 0.92635 0.98864 1.01767 1.18300 0.94004 0.90733 0.88651 1.19552 0.91047 1.04549 1.31688 0.89406 1.26009 1.01793 0.94084 0.92714 1.69737 1.39053 1.10633 1.21299 0.86275 0.81026 0.79041 0.80145 1.18543 1.19987 1.18501 1.19143 0.88445 0.90522 1.14844 1.18432 0.92724 0.91905 0.92607 1.21222 0.95282 0.95344 0.99522 1.21360 1.02493 0.87745 0.98426 1.42842 1.22516 1.10017 1.27676 1.22493 1.07856 0.84952 1.10432 1.22350 0.93595 0.99588 0.97373 1.70699 1.26402 0.99294 1.26894 1.20905 0.90089 0.96197 0.93285 1.20563 1.01179 0.88161 1.02128 1.66869 1.09353 1.29392 1.09615 0.92945 0.92434 0.92784 0.88075 0.85276 0.90111 0.81976 0.82601 0.81007 0.81108 0.83671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.32 10.15 36.01 0.37 -0.95 16 2 C 0.00 0.01 6.79 -82.41 -0.56 -0.55 16 3 C -0.14 -3.05 9.64 -39.82 -0.38 -3.43 16 4 C -0.12 -2.86 8.71 -38.99 -0.34 -3.20 16 5 C 0.09 2.12 5.55 -106.39 -0.59 1.53 16 6 C -0.44 -10.09 6.74 -37.98 -0.26 -10.34 16 7 H 0.09 1.97 6.47 -52.49 -0.34 1.63 16 8 C 0.07 1.61 5.25 -17.33 -0.09 1.52 16 9 N -0.78 -17.67 10.91 55.55 0.61 -17.07 16 10 Si 0.91 16.51 29.58 -169.99 -5.03 11.48 16 11 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 12 H -0.28 -4.89 7.11 56.52 0.40 -4.49 16 13 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 14 C 0.01 0.16 6.44 -82.28 -0.53 -0.37 16 15 C 0.05 1.07 5.27 -104.57 -0.55 0.52 16 16 C -0.09 -1.74 7.80 -39.55 -0.31 -2.05 16 17 C 0.02 0.34 10.91 -16.67 -0.18 0.16 16 18 N -0.36 -6.34 2.95 -62.71 -0.18 -6.52 16 19 C -0.13 -1.88 11.75 -16.38 -0.19 -2.07 16 20 C 0.02 0.38 11.83 -17.95 -0.21 0.17 16 21 N -0.51 -10.11 11.31 -12.82 -0.15 -10.26 16 22 C 0.24 4.78 7.79 -155.90 -1.21 3.56 16 23 C -0.10 -2.07 9.78 -38.54 -0.38 -2.44 16 24 N -0.44 -10.43 10.05 -5.48 -0.06 -10.49 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.82 8.07 -51.92 -0.42 0.40 16 28 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 29 H 0.13 3.06 6.33 -52.48 -0.33 2.73 16 30 H 0.29 5.92 8.30 -40.82 -0.34 5.58 16 31 H 0.16 3.03 6.80 -52.48 -0.36 2.68 16 32 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 33 H 0.17 1.88 8.06 -52.48 -0.42 1.45 16 34 H 0.17 2.03 8.06 -52.49 -0.42 1.61 16 35 H 0.15 3.06 8.06 -52.49 -0.42 2.63 16 LS Contribution 303.05 15.07 4.57 4.57 Total: -1.00 -27.48 303.05 -9.20 -36.68 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -3.54 Total: 9.54 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -5.42 Total: -17.94 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.22 Total: -44.34 kcal Atomic # 14 Polarization: 16.51 SS G_CDS: -5.03 Total: 11.48 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.48 -9.20 -36.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240503904.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.315 kcal (2) G-P(sol) polarization free energy of solvation -27.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds