Wall clock time and date at job start Tue Mar 31 2020 00:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30524 * 125.95280 * 2 1 4 4 N 1.39950 * 108.85494 * 180.02562 * 3 2 1 5 5 H 0.96999 * 125.80001 * 179.97438 * 4 3 2 6 6 C 1.34586 * 108.40234 * 359.97438 * 4 3 2 7 7 C 1.37879 * 107.40179 * 359.73156 * 6 4 3 8 8 C 1.47846 * 126.38079 * 180.25631 * 7 6 4 9 9 N 1.31614 * 119.45586 * 227.42655 * 8 7 6 10 10 C 1.33703 * 121.73337 * 179.75285 * 9 8 7 11 11 C 1.40453 * 120.97462 * 180.33052 * 10 9 8 12 12 C 1.36257 * 119.71197 * 180.25801 * 11 10 9 13 13 C 1.39154 * 121.74365 * 359.95339 * 12 11 10 14 14 C 1.36137 * 121.46504 * 359.97438 * 13 12 11 15 15 C 1.40779 * 119.46799 * 0.02562 * 14 13 12 16 16 C 1.40042 * 121.40440 * 180.02562 * 15 14 13 17 17 C 1.40337 * 117.98107 * 179.97438 * 16 15 14 18 18 C 1.40830 * 120.41272 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00118 * 207.79836 * 18 17 16 20 20 C 1.40080 * 119.99559 * 27.79907 * 18 17 16 21 21 N 1.30777 * 120.00301 * 13.44101 * 20 18 17 22 22 Si 1.86800 * 119.99632 * 193.43703 * 20 18 17 23 23 H 1.48497 * 109.47339 * 60.00574 * 22 20 18 24 24 H 1.48500 * 109.46827 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47176 * 300.00022 * 22 20 18 26 26 H 1.08992 * 109.47308 * 90.02347 * 1 2 3 27 27 H 1.09006 * 109.47212 * 210.02847 * 1 2 3 28 28 H 1.09009 * 109.46807 * 330.02090 * 1 2 3 29 29 H 1.07996 * 126.30038 * 179.97438 * 6 4 3 30 30 H 1.08001 * 120.14307 * 0.20921 * 11 10 9 31 31 H 1.07999 * 119.12850 * 179.97438 * 12 11 10 32 32 H 1.08002 * 119.26705 * 180.02562 * 13 12 11 33 33 H 1.08001 * 120.25922 * 180.02562 * 14 13 12 34 34 H 1.08002 * 121.00693 * 359.96550 * 16 15 14 35 35 H 0.96998 * 120.00044 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0566 0.0000 4 7 3.6110 0.6451 -0.0006 5 1 4.3846 1.2303 -0.0011 6 6 3.6417 -0.7004 -0.0004 7 6 2.3357 -1.1426 0.0065 8 6 1.8869 -2.5512 0.0145 9 7 0.9485 -2.9363 -0.8242 10 6 0.5120 -4.1996 -0.8593 11 6 -0.4855 -4.5947 -1.7657 12 6 -0.9151 -5.8878 -1.7758 13 6 -0.3904 -6.8403 -0.9075 14 6 0.5791 -6.5228 -0.0062 15 6 1.0644 -5.2026 0.0528 16 6 2.0613 -4.8316 0.9637 17 6 2.4923 -3.4960 0.9602 18 6 3.4925 -3.0674 1.8542 19 1 3.5198 -2.0383 2.1809 20 6 4.4519 -3.9758 2.3197 21 7 4.5878 -5.1389 1.7375 22 14 5.5371 -3.5256 3.7719 23 1 4.6880 -3.2601 4.9609 24 1 6.4627 -4.6493 4.0651 25 1 6.3238 -2.3096 3.4439 26 1 -0.3633 -0.0004 -1.0276 27 1 -0.3634 -0.8898 0.5143 28 1 -0.3633 0.8903 0.5136 29 1 4.5263 -1.3198 -0.0011 30 1 -0.9108 -3.8766 -2.4512 31 1 -1.6828 -6.1813 -2.4764 32 1 -0.7601 -7.8542 -0.9502 33 1 0.9728 -7.2777 0.6583 34 1 2.4854 -5.5514 1.6481 35 1 5.2524 -5.7677 2.0596 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240518364.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:56 Heat of formation + Delta-G solvation = 105.423229 kcal Electronic energy + Delta-G solvation = -20729.136532 eV Core-core repulsion = 17692.546783 eV Total energy + Delta-G solvation = -3036.589750 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.54257 -38.77788 -35.92492 -34.17964 -32.40348 -31.62922 -30.68322 -29.14801 -27.93595 -27.29586 -25.61391 -22.98087 -21.88477 -20.59377 -20.32912 -19.07628 -17.94764 -17.47343 -16.28234 -15.88879 -14.97538 -14.62162 -14.30459 -13.69951 -13.44592 -13.39054 -12.90889 -12.74369 -12.49451 -12.28573 -12.26770 -11.88662 -11.68491 -11.55114 -11.34268 -11.03961 -10.85251 -10.70300 -10.44350 -10.11869 -9.87090 -9.57113 -8.97004 -8.84314 -8.35580 -8.02627 -7.28549 -7.06928 -6.91290 -4.54217 1.57576 2.05113 2.44561 2.85685 2.91734 2.94666 3.19381 3.34678 3.56053 3.71565 3.99184 4.67974 5.10543 5.42073 5.56144 5.60731 5.69922 5.73639 5.85113 5.99593 6.12370 6.20848 6.28834 6.33766 6.35061 6.48494 6.62156 6.73947 6.84326 6.91268 7.05209 7.18191 7.31633 7.40377 7.46655 7.74643 7.76352 7.79467 7.95481 8.21665 8.31083 8.49362 8.57975 9.32090 9.89846 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.011590 B = 0.008784 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.279073 B = 3186.773826 C = 5330.466998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.100 3.900 3 N -0.319 5.319 4 N -0.482 5.482 5 H 0.435 0.565 6 C 0.086 3.914 7 C -0.156 4.156 8 C 0.167 3.833 9 N -0.463 5.463 10 C 0.030 3.970 11 C -0.062 4.062 12 C -0.179 4.179 13 C -0.121 4.121 14 C -0.130 4.130 15 C -0.048 4.048 16 C -0.175 4.175 17 C 0.076 3.924 18 C -0.429 4.429 19 H 0.087 0.913 20 C 0.071 3.929 21 N -0.776 5.776 22 Si 0.911 3.089 23 H -0.261 1.261 24 H -0.276 1.276 25 H -0.264 1.264 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.182 0.818 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.131 0.869 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.748 2.899 -0.639 3.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.067 4.067 3 N -0.143 5.143 4 N -0.188 5.188 5 H 0.278 0.722 6 C -0.063 4.063 7 C -0.168 4.168 8 C 0.010 3.990 9 N -0.169 5.169 10 C -0.092 4.092 11 C -0.081 4.081 12 C -0.199 4.199 13 C -0.139 4.139 14 C -0.149 4.149 15 C -0.050 4.050 16 C -0.200 4.200 17 C 0.071 3.929 18 C -0.458 4.458 19 H 0.105 0.895 20 C -0.149 4.149 21 N -0.400 5.400 22 Si 0.735 3.265 23 H -0.186 1.186 24 H -0.201 1.201 25 H -0.188 1.188 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.199 0.801 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.148 0.852 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.034 4.419 -1.269 4.712 hybrid contribution 1.536 -1.313 1.215 2.358 sum 0.502 3.106 -0.054 3.147 Atomic orbital electron populations 1.20056 0.86882 1.02348 1.02786 1.22387 0.96747 0.89823 0.97704 1.76910 0.86774 1.22865 1.27787 1.45899 1.06988 1.05529 1.60393 0.72235 1.22996 0.99641 0.84252 0.99404 1.18590 0.90977 0.91885 1.15349 1.20313 0.94936 0.90897 0.92851 1.67459 1.11746 1.16454 1.21288 1.19322 1.00956 0.88834 1.00055 1.20475 0.95300 0.95406 0.96936 1.20245 1.03519 0.93749 1.02380 1.20449 0.98108 0.98249 0.97072 1.20844 0.98656 0.95428 0.99974 1.19715 0.96008 0.93184 0.96105 1.21462 0.99099 0.97392 1.02081 1.19218 0.91517 0.91556 0.90652 1.19541 1.08081 0.97366 1.20794 0.89538 1.26009 0.97750 0.94298 0.96860 1.69765 1.28809 1.06676 1.34742 0.86296 0.79489 0.79208 0.81507 1.18570 1.20081 1.18822 0.90599 0.90537 0.91909 0.80073 0.87016 0.87859 0.88025 0.87260 0.85184 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.04 10.07 36.01 0.36 -0.67 16 2 C 0.10 1.94 7.26 -82.04 -0.60 1.35 16 3 N -0.32 -5.84 12.64 33.88 0.43 -5.41 16 4 N -0.48 -7.61 7.31 30.87 0.23 -7.39 16 5 H 0.43 5.02 8.96 -182.71 -1.64 3.38 16 6 C 0.09 1.55 10.29 -16.48 -0.17 1.38 16 7 C -0.16 -3.26 5.25 -104.99 -0.55 -3.81 16 8 C 0.17 3.93 6.51 -80.59 -0.52 3.40 16 9 N -0.46 -10.91 10.01 -4.83 -0.05 -10.96 16 10 C 0.03 0.70 6.74 -82.94 -0.56 0.14 16 11 C -0.06 -1.27 9.98 -39.46 -0.39 -1.66 16 12 C -0.18 -3.27 9.90 -39.95 -0.40 -3.67 16 13 C -0.12 -2.23 9.91 -40.00 -0.40 -2.62 16 14 C -0.13 -2.70 9.80 -39.38 -0.39 -3.09 16 15 C -0.05 -1.13 5.87 -104.98 -0.62 -1.74 16 16 C -0.18 -4.35 8.52 -38.12 -0.32 -4.67 16 17 C 0.08 1.86 5.70 -104.69 -0.60 1.26 16 18 C -0.43 -10.00 7.61 -37.91 -0.29 -10.29 16 19 H 0.09 1.95 6.71 -52.49 -0.35 1.60 16 20 C 0.07 1.58 5.22 -17.31 -0.09 1.49 16 21 N -0.78 -18.09 10.94 55.55 0.61 -17.48 16 22 Si 0.91 16.80 29.58 -169.99 -5.03 11.77 16 23 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 24 H -0.28 -5.02 7.11 56.52 0.40 -4.61 16 25 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 26 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.08 1.36 7.99 -51.93 -0.42 0.95 16 28 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 29 H 0.18 3.04 7.79 -52.49 -0.41 2.63 16 30 H 0.11 2.06 8.06 -52.49 -0.42 1.63 16 31 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.11 2.09 8.06 -52.49 -0.42 1.67 16 34 H 0.13 3.29 6.32 -52.49 -0.33 2.96 16 35 H 0.29 6.10 8.29 -40.82 -0.34 5.76 16 LS Contribution 305.01 15.07 4.60 4.60 Total: -1.00 -27.81 305.01 -9.56 -37.37 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -4.82 Total: 10.69 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -5.53 Total: -23.20 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 1.21 Total: -41.23 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -5.03 Total: 11.77 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.81 -9.56 -37.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240518364.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.793 kcal (2) G-P(sol) polarization free energy of solvation -27.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds