Wall clock time and date at job start Tue Mar 31 2020 00:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30524 * 125.95280 * 2 1 4 4 N 1.39950 * 108.85494 * 180.02562 * 3 2 1 5 5 H 0.96999 * 125.80001 * 179.97438 * 4 3 2 6 6 C 1.34586 * 108.40234 * 359.97438 * 4 3 2 7 7 C 1.37879 * 107.40179 * 359.73156 * 6 4 3 8 8 C 1.47846 * 126.38079 * 180.25631 * 7 6 4 9 9 N 1.31614 * 119.45586 * 227.42655 * 8 7 6 10 10 C 1.33703 * 121.73337 * 179.75285 * 9 8 7 11 11 C 1.40453 * 120.97462 * 180.33052 * 10 9 8 12 12 C 1.36257 * 119.71197 * 180.25801 * 11 10 9 13 13 C 1.39154 * 121.74365 * 359.95339 * 12 11 10 14 14 C 1.36137 * 121.46504 * 359.97438 * 13 12 11 15 15 C 1.40779 * 119.46799 * 0.02562 * 14 13 12 16 16 C 1.40042 * 121.40440 * 180.02562 * 15 14 13 17 17 C 1.40337 * 117.98107 * 179.97438 * 16 15 14 18 18 C 1.40830 * 120.41272 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00118 * 207.79836 * 18 17 16 20 20 C 1.40080 * 119.99559 * 27.79907 * 18 17 16 21 21 N 1.30777 * 120.00301 * 13.44101 * 20 18 17 22 22 Si 1.86800 * 119.99632 * 193.43703 * 20 18 17 23 23 H 1.48497 * 109.47339 * 60.00574 * 22 20 18 24 24 H 1.48500 * 109.46827 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47176 * 300.00022 * 22 20 18 26 26 H 1.08992 * 109.47308 * 90.02347 * 1 2 3 27 27 H 1.09006 * 109.47212 * 210.02847 * 1 2 3 28 28 H 1.09009 * 109.46807 * 330.02090 * 1 2 3 29 29 H 1.07996 * 126.30038 * 179.97438 * 6 4 3 30 30 H 1.08001 * 120.14307 * 0.20921 * 11 10 9 31 31 H 1.07999 * 119.12850 * 179.97438 * 12 11 10 32 32 H 1.08002 * 119.26705 * 180.02562 * 13 12 11 33 33 H 1.08001 * 120.25922 * 180.02562 * 14 13 12 34 34 H 1.08002 * 121.00693 * 359.96550 * 16 15 14 35 35 H 0.96998 * 120.00044 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0566 0.0000 4 7 3.6110 0.6451 -0.0006 5 1 4.3846 1.2303 -0.0011 6 6 3.6417 -0.7004 -0.0004 7 6 2.3357 -1.1426 0.0065 8 6 1.8869 -2.5512 0.0145 9 7 0.9485 -2.9363 -0.8242 10 6 0.5120 -4.1996 -0.8593 11 6 -0.4855 -4.5947 -1.7657 12 6 -0.9151 -5.8878 -1.7758 13 6 -0.3904 -6.8403 -0.9075 14 6 0.5791 -6.5228 -0.0062 15 6 1.0644 -5.2026 0.0528 16 6 2.0613 -4.8316 0.9637 17 6 2.4923 -3.4960 0.9602 18 6 3.4925 -3.0674 1.8542 19 1 3.5198 -2.0383 2.1809 20 6 4.4519 -3.9758 2.3197 21 7 4.5878 -5.1389 1.7375 22 14 5.5371 -3.5256 3.7719 23 1 4.6880 -3.2601 4.9609 24 1 6.4627 -4.6493 4.0651 25 1 6.3238 -2.3096 3.4439 26 1 -0.3633 -0.0004 -1.0276 27 1 -0.3634 -0.8898 0.5143 28 1 -0.3633 0.8903 0.5136 29 1 4.5263 -1.3198 -0.0011 30 1 -0.9108 -3.8766 -2.4512 31 1 -1.6828 -6.1813 -2.4764 32 1 -0.7601 -7.8542 -0.9502 33 1 0.9728 -7.2777 0.6583 34 1 2.4854 -5.5514 1.6481 35 1 5.2524 -5.7677 2.0596 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240518364.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:54 Heat of formation + Delta-G solvation = 90.304779 kcal Electronic energy + Delta-G solvation = -20729.792117 eV Core-core repulsion = 17692.546783 eV Total energy + Delta-G solvation = -3037.245335 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.99175 -40.42961 -37.54765 -35.87771 -33.82007 -33.30798 -32.25724 -30.79853 -29.47291 -28.69632 -27.31917 -24.58042 -23.56492 -22.25521 -21.82746 -20.53656 -19.60212 -18.96091 -17.91660 -17.52945 -16.51946 -16.22253 -15.74324 -15.14714 -15.05434 -14.92225 -14.55451 -14.34152 -14.07553 -13.71988 -13.60960 -13.53066 -13.36056 -12.96071 -12.85321 -12.67169 -12.31755 -12.25767 -11.99369 -11.66569 -11.47585 -11.24026 -10.66978 -10.23680 -10.04420 -9.63139 -8.98525 -8.72608 -8.55437 -6.31327 -0.06603 0.39097 0.99672 1.36947 1.42126 1.50558 1.60927 1.89515 2.05887 2.16567 2.38491 3.00519 3.58448 3.81307 4.00113 4.09041 4.16981 4.32758 4.41069 4.48697 4.66735 4.69684 4.73989 4.83730 4.93894 5.07831 5.08807 5.13259 5.16504 5.32514 5.44827 5.64974 5.65370 5.81606 5.86641 6.01891 6.05377 6.31989 6.50326 6.56194 6.75381 6.80061 6.83164 7.57317 8.24538 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.011590 B = 0.008784 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.279073 B = 3186.773826 C = 5330.466998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.090 3.910 3 N -0.323 5.323 4 N -0.459 5.459 5 H 0.455 0.545 6 C 0.100 3.900 7 C -0.194 4.194 8 C 0.159 3.841 9 N -0.472 5.472 10 C 0.002 3.998 11 C -0.077 4.077 12 C -0.164 4.164 13 C -0.107 4.107 14 C -0.152 4.152 15 C -0.071 4.071 16 C -0.204 4.204 17 C 0.051 3.949 18 C -0.444 4.444 19 H 0.089 0.911 20 C 0.037 3.963 21 N -0.808 5.808 22 Si 0.978 3.022 23 H -0.266 1.266 24 H -0.270 1.270 25 H -0.250 1.250 26 H 0.083 0.917 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.193 0.807 30 H 0.128 0.872 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.008 3.161 -1.085 3.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.077 4.077 3 N -0.148 5.148 4 N -0.168 5.168 5 H 0.302 0.698 6 C -0.051 4.051 7 C -0.206 4.206 8 C 0.001 3.999 9 N -0.179 5.179 10 C -0.119 4.119 11 C -0.095 4.095 12 C -0.184 4.184 13 C -0.125 4.125 14 C -0.171 4.171 15 C -0.073 4.073 16 C -0.230 4.230 17 C 0.046 3.954 18 C -0.472 4.472 19 H 0.107 0.893 20 C -0.180 4.180 21 N -0.432 5.432 22 Si 0.799 3.201 23 H -0.190 1.190 24 H -0.195 1.195 25 H -0.174 1.174 26 H 0.101 0.899 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.209 0.791 30 H 0.146 0.854 31 H 0.164 0.836 32 H 0.160 0.840 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.292 4.706 -1.734 5.179 hybrid contribution 1.530 -1.463 1.245 2.455 sum 0.238 3.243 -0.488 3.288 Atomic orbital electron populations 1.20053 0.85689 1.02545 1.03299 1.22669 0.97817 0.89422 0.97777 1.76865 0.87515 1.22509 1.27878 1.45895 1.07145 1.05091 1.58633 0.69793 1.23072 0.99091 0.85067 0.97891 1.18717 0.92559 0.91234 1.18085 1.20633 0.94760 0.92031 0.92452 1.67516 1.12122 1.16741 1.21531 1.19850 1.02120 0.88933 1.01025 1.20766 0.94923 0.96975 0.96866 1.20755 1.03078 0.92599 1.01936 1.20921 0.96199 1.00244 0.95151 1.21042 1.00010 0.94535 1.01492 1.20016 0.96236 0.94799 0.96294 1.21407 1.00663 0.97666 1.03240 1.19551 0.92382 0.91946 0.91560 1.19663 1.08458 0.97761 1.21359 0.89346 1.26777 0.98598 0.93862 0.98770 1.69836 1.29607 1.07683 1.36057 0.85286 0.77681 0.79440 0.77717 1.19044 1.19490 1.17379 0.89877 0.92289 0.89631 0.79068 0.85369 0.83608 0.83958 0.86572 0.86823 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.90 10.07 71.24 0.72 -1.19 16 2 C 0.09 3.45 7.26 43.47 0.32 3.77 16 3 N -0.32 -11.40 12.64 -46.73 -0.59 -11.99 16 4 N -0.46 -13.80 7.31 -56.23 -0.41 -14.21 16 5 H 0.45 9.47 8.96 -213.42 -1.91 7.56 16 6 C 0.10 3.56 10.29 84.19 0.87 4.42 16 7 C -0.19 -8.20 5.25 -20.11 -0.11 -8.30 16 8 C 0.16 7.73 6.51 43.95 0.29 8.02 16 9 N -0.47 -22.90 10.01 -169.20 -1.69 -24.60 16 10 C 0.00 0.09 6.74 41.52 0.28 0.37 16 11 C -0.08 -3.02 9.98 22.35 0.22 -2.80 16 12 C -0.16 -5.48 9.90 22.03 0.22 -5.26 16 13 C -0.11 -3.68 9.91 22.00 0.22 -3.46 16 14 C -0.15 -6.30 9.80 22.40 0.22 -6.08 16 15 C -0.07 -3.48 5.87 -20.10 -0.12 -3.60 16 16 C -0.20 -10.72 8.52 23.22 0.20 -10.52 16 17 C 0.05 2.61 5.70 -19.91 -0.11 2.50 16 18 C -0.44 -21.34 7.61 23.35 0.18 -21.17 16 19 H 0.09 4.08 6.71 -2.91 -0.02 4.06 16 20 C 0.04 1.69 5.22 85.30 0.45 2.14 16 21 N -0.81 -38.87 10.94 21.85 0.24 -38.63 16 22 Si 0.98 34.38 29.58 68.60 2.03 36.41 16 23 H -0.27 -9.47 7.11 99.48 0.71 -8.77 16 24 H -0.27 -9.17 7.11 99.48 0.71 -8.46 16 25 H -0.25 -8.19 7.11 99.48 0.71 -7.48 16 26 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.06 2.15 7.99 -2.38 -0.02 2.13 16 28 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 29 H 0.19 6.36 7.79 -2.91 -0.02 6.33 16 30 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 31 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 32 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 33 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 34 H 0.11 6.15 6.32 -2.91 -0.02 6.13 16 35 H 0.29 12.75 8.29 -92.71 -0.77 11.98 16 Total: -1.00 -62.05 305.01 2.63 -59.42 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: -0.77 Total: 34.78 kcal Atomic # 6 Polarization: -45.01 SS G_CDS: 3.83 Total: -41.18 kcal Atomic # 7 Polarization: -86.97 SS G_CDS: -2.46 Total: -89.42 kcal Atomic # 14 Polarization: 34.38 SS G_CDS: 2.03 Total: 36.41 kcal Total: -62.05 2.63 -59.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240518364.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.724 kcal (2) G-P(sol) polarization free energy of solvation -62.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds