Wall clock time and date at job start Tue Mar 31 2020 00:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38935 * 119.23831 * 2 1 4 4 C 1.36839 * 119.81656 * 179.97438 * 3 2 1 5 5 C 1.41151 * 118.40453 * 359.74267 * 4 3 2 6 6 C 1.40804 * 120.72340 * 180.24544 * 5 4 3 7 7 H 1.08004 * 119.99809 * 150.64153 * 6 5 4 8 8 C 1.40011 * 120.00552 * 330.64948 * 6 5 4 9 9 N 1.30801 * 120.00221 * 162.78226 * 8 6 5 10 10 Si 1.86798 * 119.99538 * 342.78215 * 8 6 5 11 11 H 1.48498 * 109.47396 * 90.54502 * 10 8 6 12 12 H 1.48505 * 109.47171 * 210.54256 * 10 8 6 13 13 H 1.48499 * 109.47511 * 330.54323 * 10 8 6 14 14 C 1.41942 * 118.54617 * 0.49331 * 5 4 3 15 15 C 1.47599 * 119.99662 * 179.77704 * 14 5 4 16 16 C 1.40986 * 119.36159 * 316.44704 * 15 14 5 17 17 C 1.35212 * 121.57411 * 179.97438 * 16 15 14 18 18 C 1.41373 * 119.91348 * 0.02562 * 17 16 15 19 19 C 1.38074 * 134.47573 * 180.02562 * 18 17 16 20 20 N 1.34162 * 107.97354 * 179.97438 * 19 18 17 21 21 H 0.97001 * 125.02428 * 180.02562 * 20 19 18 22 22 N 1.39947 * 109.93971 * 0.02562 * 20 19 18 23 23 C 1.32266 * 108.88621 * 359.97438 * 22 20 19 24 24 C 1.38355 * 119.35745 * 136.42974 * 15 14 5 25 25 N 1.31672 * 119.24174 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47175 * 270.02184 * 1 2 3 27 27 H 1.09003 * 109.47054 * 30.02124 * 1 2 3 28 28 H 1.09000 * 109.47557 * 150.02247 * 1 2 3 29 29 H 1.07998 * 120.09274 * 359.97438 * 3 2 1 30 30 H 1.08006 * 120.79240 * 180.02562 * 4 3 2 31 31 H 0.97006 * 120.00276 * 179.97438 * 9 8 6 32 32 H 1.08002 * 119.20792 * 359.95692 * 16 15 14 33 33 H 1.08003 * 120.03792 * 180.02562 * 17 16 15 34 34 H 1.08003 * 126.01302 * 359.93233 * 19 18 17 35 35 H 1.07998 * 120.31229 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2123 0.0000 4 6 3.5539 1.2261 0.0005 5 6 4.2378 -0.0086 0.0066 6 6 5.6452 -0.0513 0.0126 7 1 6.1583 -0.8814 0.4756 8 6 6.3796 0.9822 -0.5813 9 7 7.6476 1.1309 -0.2965 10 14 5.5486 2.1487 -1.7804 11 1 5.0021 3.3138 -1.0395 12 1 6.5400 2.6193 -2.7809 13 1 4.4430 1.4406 -2.4743 14 6 3.4758 -1.2061 0.0012 15 6 4.1581 -2.5149 0.0024 16 6 5.2713 -2.7149 -0.8394 17 6 5.9299 -3.8953 -0.8737 18 6 5.5042 -4.9644 -0.0524 19 6 5.9375 -6.2594 0.1517 20 7 5.1359 -6.8247 1.0671 21 1 5.2196 -7.7338 1.3949 22 7 4.1614 -5.9086 1.4790 23 6 4.3429 -4.7700 0.8308 24 6 3.6931 -3.5216 0.8298 25 7 2.1502 -1.1489 0.0005 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6347 2.1413 -0.0004 30 1 4.0974 2.1595 0.0010 31 1 8.1565 1.8467 -0.7083 32 1 5.6057 -1.9060 -1.4720 33 1 6.7801 -4.0212 -1.5278 34 1 6.7740 -6.7340 -0.3396 35 1 2.8393 -3.3510 1.4689 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240555207.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:38 Heat of formation + Delta-G solvation = 113.022652 kcal Electronic energy + Delta-G solvation = -20526.412611 eV Core-core repulsion = 17490.152397 eV Total energy + Delta-G solvation = -3036.260214 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.71603 -38.95685 -36.42060 -34.28057 -32.12972 -31.76601 -31.41406 -29.39958 -28.30328 -27.91012 -24.88295 -23.40581 -21.77338 -21.38122 -20.35497 -19.82001 -17.67747 -17.57957 -16.39390 -15.72051 -15.52636 -14.77615 -14.42827 -13.99118 -13.74772 -13.58003 -13.38906 -13.11735 -12.94207 -12.26751 -12.05459 -11.80355 -11.64806 -11.38000 -11.29087 -11.07067 -11.04895 -10.75834 -10.33367 -9.98280 -9.81260 -9.78653 -9.55588 -8.67978 -8.28032 -8.10382 -7.54707 -7.18777 -6.98877 -4.63536 1.06013 2.06072 2.47272 2.73302 2.95193 2.97410 3.04132 3.08293 3.16803 3.78568 4.33450 4.51144 4.75941 4.97157 5.22458 5.37420 5.59340 5.70088 5.81613 5.93822 6.04076 6.10592 6.21235 6.23758 6.30078 6.36872 6.47699 6.58979 6.77461 6.83066 6.94982 7.03799 7.22492 7.27098 7.39181 7.41821 7.51338 7.62173 7.74709 8.04230 8.11790 8.34942 8.51471 9.36602 9.81122 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.006628 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.423698 B = 4223.267312 C = 5671.581455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.015 4.015 3 C -0.113 4.113 4 C -0.207 4.207 5 C 0.060 3.940 6 C -0.416 4.416 7 H 0.105 0.895 8 C 0.083 3.917 9 N -0.786 5.786 10 Si 0.910 3.090 11 H -0.266 1.266 12 H -0.286 1.286 13 H -0.245 1.245 14 C 0.032 3.968 15 C 0.065 3.935 16 C -0.100 4.100 17 C -0.077 4.077 18 C -0.198 4.198 19 C 0.061 3.939 20 N -0.441 5.441 21 H 0.436 0.564 22 N -0.321 5.321 23 C 0.114 3.886 24 C -0.114 4.114 25 N -0.434 5.434 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.290 0.710 32 H 0.136 0.864 33 H 0.118 0.882 34 H 0.180 0.820 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.043 -6.765 -2.201 7.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.155 4.155 3 C -0.133 4.133 4 C -0.232 4.232 5 C 0.055 3.945 6 C -0.444 4.444 7 H 0.123 0.877 8 C -0.139 4.139 9 N -0.408 5.408 10 Si 0.736 3.264 11 H -0.192 1.192 12 H -0.213 1.213 13 H -0.168 1.168 14 C -0.108 4.108 15 C 0.059 3.941 16 C -0.120 4.120 17 C -0.097 4.097 18 C -0.207 4.207 19 C -0.094 4.094 20 N -0.142 5.142 21 H 0.279 0.721 22 N -0.151 5.151 23 C -0.039 4.039 24 C -0.137 4.137 25 N -0.142 5.142 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.101 0.899 32 H 0.154 0.846 33 H 0.136 0.864 34 H 0.197 0.803 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.978 -8.046 -1.316 8.389 hybrid contribution 1.003 1.412 -0.803 1.909 sum -0.976 -6.634 -2.119 7.032 Atomic orbital electron populations 1.20292 0.91094 1.01128 1.00713 1.20277 0.95121 0.88230 1.11888 1.21190 0.94785 0.97634 0.99696 1.21211 0.94116 0.97629 1.10277 1.18410 0.94395 0.91003 0.90689 1.19547 0.89525 1.06012 1.29308 0.87676 1.26253 0.94795 0.96524 0.96354 1.69665 1.08876 1.28099 1.34142 0.86368 0.79733 0.80349 0.79979 1.19215 1.21349 1.16816 1.19414 0.88160 0.91163 1.12109 1.18149 0.92562 0.90752 0.92607 1.20875 0.94959 0.96871 0.99293 1.19999 0.99662 0.91546 0.98508 1.19685 1.00979 0.94675 1.05409 1.22496 0.97542 0.94242 0.95163 1.46205 1.22801 1.14073 1.31079 0.72079 1.77679 1.11907 0.99934 1.25556 1.20857 0.95147 0.93340 0.94523 1.20128 1.01498 0.89155 1.02887 1.66929 1.09499 1.29246 1.08550 0.92939 0.92826 0.92297 0.87774 0.86915 0.89921 0.84600 0.86395 0.80299 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.15 36.00 0.37 -0.90 16 2 C -0.02 -0.33 6.79 -82.40 -0.56 -0.89 16 3 C -0.11 -2.39 9.64 -39.83 -0.38 -2.78 16 4 C -0.21 -4.79 7.31 -38.98 -0.29 -5.07 16 5 C 0.06 1.48 5.10 -106.40 -0.54 0.93 16 6 C -0.42 -10.33 7.12 -37.95 -0.27 -10.60 16 7 H 0.11 2.76 6.71 -52.48 -0.35 2.41 16 8 C 0.08 1.98 5.43 -17.33 -0.09 1.88 16 9 N -0.79 -19.09 13.93 55.55 0.77 -18.32 16 10 Si 0.91 19.17 24.54 -169.99 -4.17 15.00 16 11 H -0.27 -5.45 6.47 56.52 0.37 -5.08 16 12 H -0.29 -5.79 7.11 56.52 0.40 -5.39 16 13 H -0.24 -5.38 7.00 56.52 0.40 -4.98 16 14 C 0.03 0.76 6.39 -82.26 -0.53 0.23 16 15 C 0.06 1.45 5.26 -104.99 -0.55 0.89 16 16 C -0.10 -2.05 7.68 -39.62 -0.30 -2.35 16 17 C -0.08 -1.36 10.06 -39.47 -0.40 -1.75 16 18 C -0.20 -3.43 6.32 -105.13 -0.66 -4.10 16 19 C 0.06 0.79 12.07 -16.59 -0.20 0.59 16 20 N -0.44 -5.77 7.19 30.84 0.22 -5.55 16 21 H 0.44 3.71 8.96 -182.71 -1.64 2.07 16 22 N -0.32 -5.85 12.71 33.22 0.42 -5.43 16 23 C 0.11 2.26 7.47 -83.10 -0.62 1.64 16 24 C -0.11 -2.45 9.67 -38.59 -0.37 -2.82 16 25 N -0.43 -10.22 10.02 -5.47 -0.05 -10.27 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 30 H 0.11 2.53 4.54 -52.48 -0.24 2.29 16 31 H 0.29 6.36 8.30 -40.82 -0.34 6.02 16 32 H 0.14 2.85 6.64 -52.49 -0.35 2.51 16 33 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 34 H 0.18 1.43 8.06 -52.48 -0.42 1.01 16 35 H 0.12 2.69 8.06 -52.49 -0.42 2.27 16 LS Contribution 297.17 15.07 4.48 4.48 Total: -1.00 -29.57 297.17 -8.45 -38.02 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -4.71 Total: 7.17 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -5.41 Total: -25.10 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 1.36 Total: -39.56 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.17 Total: 15.00 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.57 -8.45 -38.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240555207.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.040 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds