Wall clock time and date at job start Tue Mar 31 2020 00:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38935 * 119.23831 * 2 1 4 4 C 1.36839 * 119.81656 * 179.97438 * 3 2 1 5 5 C 1.41151 * 118.40453 * 359.74267 * 4 3 2 6 6 C 1.40804 * 120.72340 * 180.24544 * 5 4 3 7 7 H 1.08004 * 119.99809 * 150.64153 * 6 5 4 8 8 C 1.40011 * 120.00552 * 330.64948 * 6 5 4 9 9 N 1.30801 * 120.00221 * 162.78226 * 8 6 5 10 10 Si 1.86798 * 119.99538 * 342.78215 * 8 6 5 11 11 H 1.48498 * 109.47396 * 90.54502 * 10 8 6 12 12 H 1.48505 * 109.47171 * 210.54256 * 10 8 6 13 13 H 1.48499 * 109.47511 * 330.54323 * 10 8 6 14 14 C 1.41942 * 118.54617 * 0.49331 * 5 4 3 15 15 C 1.47599 * 119.99662 * 179.77704 * 14 5 4 16 16 C 1.40986 * 119.36159 * 316.44704 * 15 14 5 17 17 C 1.35212 * 121.57411 * 179.97438 * 16 15 14 18 18 C 1.41373 * 119.91348 * 0.02562 * 17 16 15 19 19 C 1.38074 * 134.47573 * 180.02562 * 18 17 16 20 20 N 1.34162 * 107.97354 * 179.97438 * 19 18 17 21 21 H 0.97001 * 125.02428 * 180.02562 * 20 19 18 22 22 N 1.39947 * 109.93971 * 0.02562 * 20 19 18 23 23 C 1.32266 * 108.88621 * 359.97438 * 22 20 19 24 24 C 1.38355 * 119.35745 * 136.42974 * 15 14 5 25 25 N 1.31672 * 119.24174 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47175 * 270.02184 * 1 2 3 27 27 H 1.09003 * 109.47054 * 30.02124 * 1 2 3 28 28 H 1.09000 * 109.47557 * 150.02247 * 1 2 3 29 29 H 1.07998 * 120.09274 * 359.97438 * 3 2 1 30 30 H 1.08006 * 120.79240 * 180.02562 * 4 3 2 31 31 H 0.97006 * 120.00276 * 179.97438 * 9 8 6 32 32 H 1.08002 * 119.20792 * 359.95692 * 16 15 14 33 33 H 1.08003 * 120.03792 * 180.02562 * 17 16 15 34 34 H 1.08003 * 126.01302 * 359.93233 * 19 18 17 35 35 H 1.07998 * 120.31229 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2123 0.0000 4 6 3.5539 1.2261 0.0005 5 6 4.2378 -0.0086 0.0066 6 6 5.6452 -0.0513 0.0126 7 1 6.1583 -0.8814 0.4756 8 6 6.3796 0.9822 -0.5813 9 7 7.6476 1.1309 -0.2965 10 14 5.5486 2.1487 -1.7804 11 1 5.0021 3.3138 -1.0395 12 1 6.5400 2.6193 -2.7809 13 1 4.4430 1.4406 -2.4743 14 6 3.4758 -1.2061 0.0012 15 6 4.1581 -2.5149 0.0024 16 6 5.2713 -2.7149 -0.8394 17 6 5.9299 -3.8953 -0.8737 18 6 5.5042 -4.9644 -0.0524 19 6 5.9375 -6.2594 0.1517 20 7 5.1359 -6.8247 1.0671 21 1 5.2196 -7.7338 1.3949 22 7 4.1614 -5.9086 1.4790 23 6 4.3429 -4.7700 0.8308 24 6 3.6931 -3.5216 0.8298 25 7 2.1502 -1.1489 0.0005 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6347 2.1413 -0.0004 30 1 4.0974 2.1595 0.0010 31 1 8.1565 1.8467 -0.7083 32 1 5.6057 -1.9060 -1.4720 33 1 6.7801 -4.0212 -1.5278 34 1 6.7740 -6.7340 -0.3396 35 1 2.8393 -3.3510 1.4689 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240555207.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:38 Heat of formation + Delta-G solvation = 93.876781 kcal Electronic energy + Delta-G solvation = -20527.242838 eV Core-core repulsion = 17490.152397 eV Total energy + Delta-G solvation = -3037.090441 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.02685 -40.66611 -37.89389 -36.04601 -33.74331 -33.40135 -32.87027 -30.85610 -29.84829 -29.38780 -26.49628 -24.97466 -23.28432 -23.07328 -21.79917 -21.27634 -19.39013 -18.91176 -17.86806 -17.39072 -17.11889 -16.38315 -15.71913 -15.59164 -15.31142 -15.26037 -14.81924 -14.66085 -14.46117 -13.88959 -13.65630 -13.36101 -13.10992 -12.94552 -12.80100 -12.61913 -12.53219 -12.36546 -11.98427 -11.71196 -11.31840 -11.18432 -11.16637 -10.37074 -10.00064 -9.76603 -9.12698 -8.96510 -8.43498 -6.47067 -0.33542 0.47849 0.74988 1.11923 1.25110 1.38805 1.47124 1.60855 1.98669 2.08038 2.58324 2.97151 3.40739 3.50958 3.71996 3.90356 4.19231 4.30415 4.38700 4.42483 4.54579 4.65330 4.67597 4.75255 4.83393 4.95063 4.96895 4.98856 5.23434 5.27452 5.34606 5.53405 5.57425 5.67417 5.73516 5.98283 6.00533 6.06828 6.26093 6.41997 6.57862 6.67565 6.70897 7.61381 8.08420 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.006628 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.423698 B = 4223.267312 C = 5671.581455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.018 4.018 3 C -0.117 4.117 4 C -0.219 4.219 5 C 0.041 3.959 6 C -0.436 4.436 7 H 0.075 0.925 8 C 0.057 3.943 9 N -0.820 5.820 10 Si 0.957 3.043 11 H -0.252 1.252 12 H -0.270 1.270 13 H -0.262 1.262 14 C 0.015 3.985 15 C 0.049 3.951 16 C -0.142 4.142 17 C -0.044 4.044 18 C -0.237 4.237 19 C 0.118 3.882 20 N -0.416 5.416 21 H 0.460 0.540 22 N -0.358 5.358 23 C 0.089 3.911 24 C -0.134 4.134 25 N -0.459 5.459 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.144 0.856 30 H 0.119 0.881 31 H 0.299 0.701 32 H 0.118 0.882 33 H 0.155 0.845 34 H 0.246 0.754 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.952 -8.083 -3.127 8.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.158 4.158 3 C -0.136 4.136 4 C -0.245 4.245 5 C 0.036 3.964 6 C -0.464 4.464 7 H 0.093 0.907 8 C -0.162 4.162 9 N -0.444 5.444 10 Si 0.780 3.220 11 H -0.178 1.178 12 H -0.196 1.196 13 H -0.187 1.187 14 C -0.124 4.124 15 C 0.044 3.956 16 C -0.162 4.162 17 C -0.064 4.064 18 C -0.246 4.246 19 C -0.040 4.040 20 N -0.118 5.118 21 H 0.308 0.692 22 N -0.189 5.189 23 C -0.062 4.062 24 C -0.157 4.157 25 N -0.167 5.167 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.077 0.923 29 H 0.162 0.838 30 H 0.137 0.863 31 H 0.110 0.890 32 H 0.136 0.864 33 H 0.172 0.828 34 H 0.262 0.738 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.896 -9.388 -2.208 9.829 hybrid contribution 0.919 1.517 -0.454 1.831 sum -0.977 -7.871 -2.662 8.367 Atomic orbital electron populations 1.20391 0.87638 1.02685 1.02180 1.21206 0.97553 0.87910 1.09172 1.21606 0.94248 0.99255 0.98505 1.21424 0.95278 0.97266 1.10511 1.18601 0.94476 0.91957 0.91342 1.19332 0.89865 1.06063 1.31138 0.90697 1.26745 0.95109 0.97306 0.97029 1.69670 1.09744 1.29406 1.35584 0.85656 0.78738 0.78991 0.78584 1.17758 1.19639 1.18677 1.19830 0.88646 0.92128 1.11770 1.18267 0.93430 0.90355 0.93594 1.20720 0.96388 0.98152 1.00951 1.20348 0.98784 0.90207 0.97049 1.20030 1.01417 0.96869 1.06325 1.23413 0.96658 0.91924 0.92053 1.46308 1.21082 1.14541 1.29879 0.69230 1.77625 1.14215 1.00262 1.26775 1.20834 0.96308 0.93197 0.95837 1.19972 1.01735 0.90604 1.03392 1.67059 1.09447 1.30518 1.09685 0.91389 0.89726 0.92302 0.83799 0.86349 0.88973 0.86362 0.82755 0.73810 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.27 10.15 71.23 0.72 -1.55 16 2 C -0.02 -0.76 6.79 42.75 0.29 -0.47 16 3 C -0.12 -4.82 9.64 22.11 0.21 -4.61 16 4 C -0.22 -10.26 7.31 22.66 0.17 -10.09 16 5 C 0.04 2.12 5.10 -21.02 -0.11 2.01 16 6 C -0.44 -23.02 7.12 23.33 0.17 -22.85 16 7 H 0.08 4.29 6.71 -2.91 -0.02 4.27 16 8 C 0.06 2.81 5.43 85.28 0.46 3.27 16 9 N -0.82 -41.18 13.93 21.84 0.30 -40.88 16 10 Si 0.96 39.85 24.54 68.60 1.68 41.53 16 11 H -0.25 -9.85 6.47 99.48 0.64 -9.21 16 12 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 13 H -0.26 -11.58 7.00 99.48 0.70 -10.88 16 14 C 0.02 0.77 6.39 42.40 0.27 1.04 16 15 C 0.05 2.33 5.26 -20.11 -0.11 2.23 16 16 C -0.14 -6.15 7.68 22.25 0.17 -5.98 16 17 C -0.04 -1.52 10.06 22.34 0.22 -1.30 16 18 C -0.24 -7.79 6.32 -20.19 -0.13 -7.92 16 19 C 0.12 2.44 12.07 84.30 1.02 3.46 16 20 N -0.42 -9.31 7.19 -56.35 -0.41 -9.71 16 21 H 0.46 5.69 8.96 -213.42 -1.91 3.78 16 22 N -0.36 -12.74 12.71 -48.82 -0.62 -13.36 16 23 C 0.09 3.60 7.47 42.04 0.31 3.92 16 24 C -0.13 -6.18 9.67 22.91 0.22 -5.95 16 25 N -0.46 -22.34 10.02 -171.21 -1.71 -24.06 16 26 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 27 H 0.08 2.17 8.07 -2.39 -0.02 2.15 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.14 4.71 8.06 -2.91 -0.02 4.69 16 30 H 0.12 5.29 4.54 -2.91 -0.01 5.28 16 31 H 0.30 13.39 8.30 -92.70 -0.77 12.62 16 32 H 0.12 5.40 6.64 -2.91 -0.02 5.38 16 33 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 34 H 0.25 1.87 8.06 -2.91 -0.02 1.84 16 35 H 0.10 4.96 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -70.59 297.17 2.31 -68.28 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: -0.84 Total: 22.99 kcal Atomic # 6 Polarization: -48.69 SS G_CDS: 3.90 Total: -44.79 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -2.44 Total: -88.01 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 1.68 Total: 41.53 kcal Total: -70.59 2.31 -68.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240555207.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.156 kcal (2) G-P(sol) polarization free energy of solvation -70.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds