Wall clock time and date at job start Tue Mar 31 2020 00:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31218 * 119.79750 * 2 1 4 4 C 1.33103 * 121.71979 * 180.02562 * 3 2 1 5 5 C 1.47751 * 119.45899 * 179.97438 * 4 3 2 6 6 C 1.40929 * 119.35273 * 179.97438 * 5 4 3 7 7 C 1.35233 * 121.58541 * 180.02562 * 6 5 4 8 8 C 1.41355 * 119.89495 * 359.97438 * 7 6 5 9 9 C 1.38091 * 134.48227 * 179.97438 * 8 7 6 10 10 N 1.34153 * 107.97066 * 179.40083 * 9 8 7 11 11 H 0.97004 * 125.02833 * 180.02562 * 10 9 8 12 12 N 1.39946 * 109.93890 * 0.56332 * 10 9 8 13 13 C 1.32256 * 108.88974 * 359.51088 * 12 10 9 14 14 C 1.38273 * 119.35111 * 0.02562 * 5 4 3 15 15 C 1.40010 * 121.08075 * 0.25922 * 4 3 2 16 16 C 1.36532 * 119.46476 * 359.46120 * 15 4 3 17 17 C 1.40992 * 119.80048 * 179.97438 * 2 1 3 18 18 C 1.40983 * 120.54274 * 359.96818 * 17 2 1 19 19 H 1.08001 * 120.00689 * 329.62998 * 18 17 2 20 20 C 1.39965 * 119.99729 * 149.62803 * 18 17 2 21 21 N 1.30829 * 120.00166 * 162.38382 * 20 18 17 22 22 Si 1.86804 * 120.00329 * 342.38188 * 20 18 17 23 23 H 1.48498 * 109.46749 * 95.35909 * 22 20 18 24 24 H 1.48495 * 109.47279 * 215.36212 * 22 20 18 25 25 H 1.48506 * 109.46665 * 335.36339 * 22 20 18 26 26 H 1.09004 * 109.47544 * 90.00193 * 1 2 3 27 27 H 1.09006 * 109.46849 * 209.99146 * 1 2 3 28 28 H 1.08994 * 109.47505 * 329.99834 * 1 2 3 29 29 H 1.07998 * 119.20247 * 359.97438 * 6 5 4 30 30 H 1.07998 * 120.05427 * 180.02562 * 7 6 5 31 31 H 1.07998 * 126.00929 * 359.97438 * 9 8 7 32 32 H 1.07996 * 120.30535 * 359.97438 * 14 5 4 33 33 H 1.08000 * 120.26773 * 179.74898 * 15 4 3 34 34 H 1.07998 * 120.78880 * 180.24135 * 16 15 4 35 35 H 0.96999 * 120.00379 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1590 1.1387 0.0000 4 6 3.4893 1.1833 -0.0005 5 6 4.1724 2.4935 -0.0011 6 6 5.5809 2.5381 -0.0010 7 6 6.2524 3.7120 -0.0010 8 6 5.5384 4.9320 -0.0016 9 6 5.9001 6.2647 -0.0012 10 7 4.7770 6.9984 -0.0155 11 1 4.7453 7.9679 -0.0188 12 7 3.6580 6.1580 -0.0124 13 6 4.0670 4.9003 -0.0071 14 6 3.4170 3.6517 -0.0005 15 6 4.2519 0.0092 -0.0065 16 6 3.6208 -1.2015 -0.0007 17 6 2.2076 -1.2235 0.0005 18 6 1.5100 -2.4486 0.0018 19 1 0.5418 -2.5184 0.4751 20 6 2.0723 -3.5746 -0.6106 21 7 1.6185 -4.7685 -0.3271 22 14 3.4707 -3.3729 -1.8326 23 1 4.7685 -3.5532 -1.1338 24 1 3.3408 -4.3907 -2.9060 25 1 3.4144 -2.0142 -2.4293 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8901 0.5137 28 1 -0.3634 0.8899 0.5138 29 1 6.1375 1.6126 -0.0002 30 1 7.3324 3.7174 -0.0014 31 1 6.9095 6.6487 -0.0001 32 1 2.3383 3.5988 -0.0001 33 1 5.3306 0.0607 -0.0109 34 1 4.1880 -2.1206 -0.0012 35 1 2.0084 -5.5489 -0.7512 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240555659.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:41 Heat of formation + Delta-G solvation = 112.587322 kcal Electronic energy + Delta-G solvation = -20040.588084 eV Core-core repulsion = 17004.308993 eV Total energy + Delta-G solvation = -3036.279091 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.93067 -38.97454 -36.71473 -34.15452 -32.23912 -31.99173 -31.50308 -29.80348 -28.52069 -27.17290 -25.65177 -23.25910 -22.05898 -21.34328 -20.58169 -19.69306 -17.97998 -17.59161 -16.47527 -16.18133 -15.33579 -15.06416 -14.65535 -13.92909 -13.71255 -13.61760 -13.41496 -13.38570 -12.86227 -12.41204 -12.03069 -11.92810 -11.72011 -11.46969 -11.30948 -11.16420 -11.02491 -10.83123 -10.38069 -10.07356 -10.02432 -9.90181 -9.62466 -8.69814 -8.46446 -8.19582 -7.60411 -7.23431 -7.15388 -4.65748 0.80894 1.79273 2.51662 2.64103 2.76610 2.85105 2.97005 3.07175 3.17511 3.77967 4.11644 4.52043 4.56477 4.76449 5.12678 5.30708 5.36836 5.45832 5.65516 5.79132 5.87104 6.01460 6.01598 6.25342 6.38637 6.54853 6.60085 6.61175 6.71563 6.77250 6.81188 6.86674 7.07739 7.10973 7.21151 7.30224 7.43911 7.53570 7.70146 7.85259 8.05308 8.30874 8.46563 9.37657 9.75480 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.032399 B = 0.004239 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.012824 B = 6603.647306 C = 7273.947851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.034 3.966 3 N -0.437 5.437 4 C -0.006 4.006 5 C 0.050 3.950 6 C -0.135 4.135 7 C -0.060 4.060 8 C -0.211 4.211 9 C 0.068 3.932 10 N -0.438 5.438 11 H 0.438 0.562 12 N -0.320 5.320 13 C 0.118 3.882 14 C -0.117 4.117 15 C -0.097 4.097 16 C -0.216 4.216 17 C 0.052 3.948 18 C -0.411 4.411 19 H 0.103 0.897 20 C 0.081 3.919 21 N -0.786 5.786 22 Si 0.912 3.088 23 H -0.266 1.266 24 H -0.285 1.285 25 H -0.243 1.243 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.181 0.819 32 H 0.136 0.864 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.972 12.498 -0.771 15.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 N -0.146 5.146 4 C -0.137 4.137 5 C 0.045 3.955 6 C -0.155 4.155 7 C -0.081 4.081 8 C -0.221 4.221 9 C -0.088 4.088 10 N -0.138 5.138 11 H 0.281 0.719 12 N -0.149 5.149 13 C -0.034 4.034 14 C -0.139 4.139 15 C -0.117 4.117 16 C -0.240 4.240 17 C 0.047 3.953 18 C -0.439 4.439 19 H 0.121 0.879 20 C -0.141 4.141 21 N -0.408 5.408 22 Si 0.737 3.263 23 H -0.192 1.192 24 H -0.212 1.212 25 H -0.166 1.166 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.198 0.802 32 H 0.154 0.846 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.445 13.789 -0.786 15.690 hybrid contribution 1.960 -0.993 -0.475 2.248 sum 9.405 12.796 -1.262 15.931 Atomic orbital electron populations 1.20315 0.90391 1.01331 1.01182 1.21069 0.95472 0.87484 1.07439 1.66822 1.08612 1.30240 1.08882 1.18715 0.89007 0.90558 1.15465 1.18317 0.91628 0.91469 0.94115 1.20682 0.93582 0.97762 1.03462 1.19984 0.98367 0.90048 0.99653 1.19660 0.94015 0.92910 1.15514 1.22535 0.92533 0.91466 1.02245 1.46284 1.04092 1.09668 1.53787 0.71900 1.77748 1.04893 1.00297 1.31965 1.20952 0.92436 0.92386 0.97644 1.20140 1.00074 0.86734 1.06976 1.21255 0.98888 0.93087 0.98469 1.21010 0.94696 0.96668 1.11624 1.18517 0.91967 0.94264 0.90602 1.19611 1.05340 0.90902 1.28039 0.87904 1.26300 0.97051 0.94160 0.96576 1.69671 1.37501 0.99442 1.34208 0.86272 0.80032 0.80212 0.79736 1.19201 1.21249 1.16584 0.92491 0.91309 0.92874 0.85883 0.86308 0.80197 0.84611 0.87359 0.87206 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.50 9.79 36.00 0.35 -1.15 16 2 C 0.03 0.80 6.86 -81.82 -0.56 0.24 16 3 N -0.44 -10.29 9.21 -5.41 -0.05 -10.34 16 4 C -0.01 -0.13 6.73 -82.76 -0.56 -0.69 16 5 C 0.05 0.99 5.87 -104.98 -0.62 0.37 16 6 C -0.13 -2.20 9.26 -39.63 -0.37 -2.57 16 7 C -0.06 -0.84 10.06 -39.47 -0.40 -1.24 16 8 C -0.21 -3.13 6.32 -105.13 -0.66 -3.79 16 9 C 0.07 0.73 12.07 -16.59 -0.20 0.53 16 10 N -0.44 -4.96 7.19 30.84 0.22 -4.74 16 11 H 0.44 3.03 8.96 -182.71 -1.64 1.39 16 12 N -0.32 -5.32 12.71 33.22 0.42 -4.90 16 13 C 0.12 2.12 7.47 -83.10 -0.62 1.50 16 14 C -0.12 -2.30 9.63 -38.61 -0.37 -2.67 16 15 C -0.10 -2.07 9.36 -39.53 -0.37 -2.45 16 16 C -0.22 -4.99 7.20 -39.02 -0.28 -5.27 16 17 C 0.05 1.26 5.10 -106.64 -0.54 0.72 16 18 C -0.41 -10.21 8.91 -37.90 -0.34 -10.55 16 19 H 0.10 2.61 6.55 -52.49 -0.34 2.27 16 20 C 0.08 1.96 5.42 -17.33 -0.09 1.87 16 21 N -0.79 -19.22 13.93 55.55 0.77 -18.45 16 22 Si 0.91 19.41 24.53 -169.99 -4.17 15.24 16 23 H -0.27 -5.44 6.71 56.52 0.38 -5.06 16 24 H -0.29 -5.85 7.11 56.52 0.40 -5.44 16 25 H -0.24 -5.44 6.85 56.52 0.39 -5.05 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.07 1.35 6.31 -51.93 -0.33 1.02 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.12 1.79 6.01 -52.49 -0.32 1.48 16 30 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.14 2.82 7.44 -52.49 -0.39 2.43 16 33 H 0.11 1.95 6.05 -52.49 -0.32 1.63 16 34 H 0.11 2.45 4.83 -52.49 -0.25 2.20 16 35 H 0.29 6.41 8.30 -40.82 -0.34 6.07 16 LS Contribution 295.12 15.07 4.45 4.45 Total: -1.00 -29.91 295.12 -8.43 -38.34 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -4.45 Total: 5.56 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -5.63 Total: -25.15 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 1.37 Total: -38.43 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.17 Total: 15.24 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.91 -8.43 -38.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240555659.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.928 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds