Wall clock time and date at job start Tue Mar 31 2020 00:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31218 * 119.79750 * 2 1 4 4 C 1.33103 * 121.71979 * 180.02562 * 3 2 1 5 5 C 1.47751 * 119.45899 * 179.97438 * 4 3 2 6 6 C 1.40929 * 119.35273 * 179.97438 * 5 4 3 7 7 C 1.35233 * 121.58541 * 180.02562 * 6 5 4 8 8 C 1.41355 * 119.89495 * 359.97438 * 7 6 5 9 9 C 1.38091 * 134.48227 * 179.97438 * 8 7 6 10 10 N 1.34153 * 107.97066 * 179.40083 * 9 8 7 11 11 H 0.97004 * 125.02833 * 180.02562 * 10 9 8 12 12 N 1.39946 * 109.93890 * 0.56332 * 10 9 8 13 13 C 1.32256 * 108.88974 * 359.51088 * 12 10 9 14 14 C 1.38273 * 119.35111 * 0.02562 * 5 4 3 15 15 C 1.40010 * 121.08075 * 0.25922 * 4 3 2 16 16 C 1.36532 * 119.46476 * 359.46120 * 15 4 3 17 17 C 1.40992 * 119.80048 * 179.97438 * 2 1 3 18 18 C 1.40983 * 120.54274 * 359.96818 * 17 2 1 19 19 H 1.08001 * 120.00689 * 329.62998 * 18 17 2 20 20 C 1.39965 * 119.99729 * 149.62803 * 18 17 2 21 21 N 1.30829 * 120.00166 * 162.38382 * 20 18 17 22 22 Si 1.86804 * 120.00329 * 342.38188 * 20 18 17 23 23 H 1.48498 * 109.46749 * 95.35909 * 22 20 18 24 24 H 1.48495 * 109.47279 * 215.36212 * 22 20 18 25 25 H 1.48506 * 109.46665 * 335.36339 * 22 20 18 26 26 H 1.09004 * 109.47544 * 90.00193 * 1 2 3 27 27 H 1.09006 * 109.46849 * 209.99146 * 1 2 3 28 28 H 1.08994 * 109.47505 * 329.99834 * 1 2 3 29 29 H 1.07998 * 119.20247 * 359.97438 * 6 5 4 30 30 H 1.07998 * 120.05427 * 180.02562 * 7 6 5 31 31 H 1.07998 * 126.00929 * 359.97438 * 9 8 7 32 32 H 1.07996 * 120.30535 * 359.97438 * 14 5 4 33 33 H 1.08000 * 120.26773 * 179.74898 * 15 4 3 34 34 H 1.07998 * 120.78880 * 180.24135 * 16 15 4 35 35 H 0.96999 * 120.00379 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1590 1.1387 0.0000 4 6 3.4893 1.1833 -0.0005 5 6 4.1724 2.4935 -0.0011 6 6 5.5809 2.5381 -0.0010 7 6 6.2524 3.7120 -0.0010 8 6 5.5384 4.9320 -0.0016 9 6 5.9001 6.2647 -0.0012 10 7 4.7770 6.9984 -0.0155 11 1 4.7453 7.9679 -0.0188 12 7 3.6580 6.1580 -0.0124 13 6 4.0670 4.9003 -0.0071 14 6 3.4170 3.6517 -0.0005 15 6 4.2519 0.0092 -0.0065 16 6 3.6208 -1.2015 -0.0007 17 6 2.2076 -1.2235 0.0005 18 6 1.5100 -2.4486 0.0018 19 1 0.5418 -2.5184 0.4751 20 6 2.0723 -3.5746 -0.6106 21 7 1.6185 -4.7685 -0.3271 22 14 3.4707 -3.3729 -1.8326 23 1 4.7685 -3.5532 -1.1338 24 1 3.3408 -4.3907 -2.9060 25 1 3.4144 -2.0142 -2.4293 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8901 0.5137 28 1 -0.3634 0.8899 0.5138 29 1 6.1375 1.6126 -0.0002 30 1 7.3324 3.7174 -0.0014 31 1 6.9095 6.6487 -0.0001 32 1 2.3383 3.5988 -0.0001 33 1 5.3306 0.0607 -0.0109 34 1 4.1880 -2.1206 -0.0012 35 1 2.0084 -5.5489 -0.7512 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240555659.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:40 Heat of formation + Delta-G solvation = 93.227033 kcal Electronic energy + Delta-G solvation = -20041.427610 eV Core-core repulsion = 17004.308993 eV Total energy + Delta-G solvation = -3037.118616 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.03819 -40.68696 -38.01808 -35.89854 -33.84695 -33.50675 -32.89263 -31.17000 -29.74485 -28.83650 -27.21337 -24.74469 -23.46251 -22.95739 -21.82599 -21.09862 -19.52765 -18.89434 -17.82763 -17.61367 -16.90498 -16.71701 -15.75036 -15.42595 -15.23599 -15.13110 -14.92976 -14.68386 -14.49030 -13.86706 -13.67142 -13.44807 -13.38911 -12.94757 -12.73960 -12.62866 -12.55961 -12.38216 -12.01059 -11.70657 -11.38753 -11.21426 -11.14592 -10.32916 -10.05461 -9.95160 -9.04437 -9.01230 -8.48088 -6.51105 -0.40570 0.41783 0.78927 1.08880 1.25773 1.38728 1.46214 1.62075 1.98202 2.06837 2.53540 3.02589 3.40886 3.55474 3.64327 3.85234 4.18366 4.25095 4.32369 4.41106 4.47295 4.58835 4.68385 4.80452 4.83959 4.90179 4.94980 5.01860 5.10032 5.28080 5.43859 5.50005 5.59107 5.61951 5.68662 5.87709 5.97043 6.08102 6.20961 6.40551 6.51674 6.63830 6.70633 7.59791 8.02938 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.032399 B = 0.004239 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.012824 B = 6603.647306 C = 7273.947851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.011 3.989 3 N -0.459 5.459 4 C -0.004 4.004 5 C 0.036 3.964 6 C -0.171 4.171 7 C -0.022 4.022 8 C -0.244 4.244 9 C 0.122 3.878 10 N -0.418 5.418 11 H 0.459 0.541 12 N -0.366 5.366 13 C 0.089 3.911 14 C -0.140 4.140 15 C -0.101 4.101 16 C -0.223 4.223 17 C 0.035 3.965 18 C -0.444 4.444 19 H 0.080 0.920 20 C 0.054 3.946 21 N -0.822 5.822 22 Si 0.958 3.042 23 H -0.248 1.248 24 H -0.272 1.272 25 H -0.263 1.263 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.140 0.860 30 H 0.169 0.831 31 H 0.248 0.752 32 H 0.104 0.896 33 H 0.148 0.852 34 H 0.118 0.882 35 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.553 15.610 -1.205 20.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.136 4.136 3 N -0.167 5.167 4 C -0.137 4.137 5 C 0.030 3.970 6 C -0.191 4.191 7 C -0.042 4.042 8 C -0.254 4.254 9 C -0.036 4.036 10 N -0.120 5.120 11 H 0.306 0.694 12 N -0.197 5.197 13 C -0.062 4.062 14 C -0.163 4.163 15 C -0.120 4.120 16 C -0.248 4.248 17 C 0.030 3.970 18 C -0.472 4.472 19 H 0.098 0.902 20 C -0.165 4.165 21 N -0.446 5.446 22 Si 0.781 3.219 23 H -0.172 1.172 24 H -0.198 1.198 25 H -0.188 1.188 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.158 0.842 30 H 0.187 0.813 31 H 0.264 0.736 32 H 0.122 0.878 33 H 0.166 0.834 34 H 0.136 0.864 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.976 16.900 -1.211 20.749 hybrid contribution 0.699 -1.409 -0.296 1.600 sum 12.675 15.491 -1.507 20.072 Atomic orbital electron populations 1.20292 0.88914 1.01656 1.01763 1.21533 0.96919 0.87537 1.07598 1.66939 1.09785 1.30247 1.09757 1.19452 0.88870 0.92571 1.12812 1.18439 0.93509 0.89809 0.95206 1.20772 0.91755 0.99788 1.06750 1.20478 1.00561 0.88591 0.94578 1.20128 0.92304 0.95289 1.17657 1.23533 0.94440 0.89505 0.96153 1.46392 1.03454 1.10725 1.51419 0.69353 1.77687 1.07446 1.00495 1.34031 1.20928 0.94653 0.92044 0.98579 1.19991 0.98865 0.88567 1.08867 1.21621 1.00923 0.91945 0.97534 1.21237 0.94328 0.97802 1.11396 1.18685 0.92922 0.94228 0.91157 1.19512 1.05199 0.92043 1.30495 0.90193 1.26821 0.98690 0.93670 0.97316 1.69676 1.39154 1.00051 1.35714 0.85579 0.78741 0.79144 0.78392 1.17238 1.19759 1.18759 0.91730 0.91508 0.91856 0.84235 0.81316 0.73564 0.87756 0.83442 0.86409 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.95 9.79 71.23 0.70 -2.25 16 2 C 0.01 0.52 6.86 43.32 0.30 0.82 16 3 N -0.46 -22.55 9.21 -171.03 -1.57 -24.13 16 4 C 0.00 -0.18 6.73 41.90 0.28 0.10 16 5 C 0.04 1.40 5.87 -20.09 -0.12 1.28 16 6 C -0.17 -5.11 9.26 22.24 0.21 -4.90 16 7 C -0.02 -0.51 10.06 22.34 0.22 -0.29 16 8 C -0.24 -6.13 6.32 -20.20 -0.13 -6.25 16 9 C 0.12 1.78 12.07 84.30 1.02 2.80 16 10 N -0.42 -7.56 7.19 -56.35 -0.41 -7.96 16 11 H 0.46 4.06 8.96 -213.41 -1.91 2.15 16 12 N -0.37 -11.64 12.71 -48.81 -0.62 -12.26 16 13 C 0.09 3.11 7.47 42.05 0.31 3.42 16 14 C -0.14 -5.69 9.63 22.90 0.22 -5.47 16 15 C -0.10 -4.26 9.36 22.30 0.21 -4.05 16 16 C -0.22 -10.40 7.20 22.63 0.16 -10.23 16 17 C 0.04 1.78 5.10 -21.17 -0.11 1.67 16 18 C -0.44 -23.34 8.91 23.36 0.21 -23.14 16 19 H 0.08 4.41 6.55 -2.91 -0.02 4.39 16 20 C 0.05 2.67 5.42 85.26 0.46 3.14 16 21 N -0.82 -41.61 13.93 21.83 0.30 -41.31 16 22 Si 0.96 40.16 24.53 68.60 1.68 41.85 16 23 H -0.25 -9.55 6.71 99.48 0.67 -8.88 16 24 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 25 H -0.26 -11.81 6.85 99.48 0.68 -11.13 16 26 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 27 H 0.07 2.83 6.31 -2.38 -0.02 2.82 16 28 H 0.06 2.49 8.14 -2.39 -0.02 2.48 16 29 H 0.14 3.57 6.01 -2.91 -0.02 3.55 16 30 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 31 H 0.25 0.28 8.06 -2.91 -0.02 0.26 16 32 H 0.10 4.71 7.44 -2.91 -0.02 4.68 16 33 H 0.15 4.94 6.05 -2.91 -0.02 4.92 16 34 H 0.12 5.21 4.83 -2.91 -0.01 5.20 16 35 H 0.30 13.54 8.30 -92.71 -0.77 12.77 16 Total: -1.00 -71.66 295.12 2.52 -69.14 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -0.82 Total: 18.03 kcal Atomic # 6 Polarization: -47.31 SS G_CDS: 3.95 Total: -43.36 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -2.30 Total: -85.66 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 1.68 Total: 41.85 kcal Total: -71.66 2.52 -69.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240555659.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.371 kcal (2) G-P(sol) polarization free energy of solvation -71.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds