Wall clock time and date at job start Tue Mar 31 2020 01:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36617 * 125.07203 * 2 1 4 4 C 1.34537 * 109.95939 * 179.97438 * 3 2 1 5 5 C 1.46217 * 107.04022 * 0.02562 * 4 3 2 6 6 C 1.39999 * 133.81712 * 180.02562 * 5 4 3 7 7 C 1.36148 * 119.97699 * 179.79015 * 6 5 4 8 8 C 1.40339 * 120.36924 * 0.43667 * 7 6 5 9 9 C 1.47550 * 119.83986 * 179.79919 * 8 7 6 10 10 N 1.33079 * 120.55412 * 44.05938 * 9 8 7 11 11 C 1.31869 * 120.03242 * 180.28184 * 10 9 8 12 12 C 1.39055 * 121.22842 * 359.73817 * 11 10 9 13 13 N 1.31506 * 121.14565 * 359.97438 * 12 11 10 14 14 C 1.34103 * 119.86014 * 359.97438 * 13 12 11 15 15 C 1.40691 * 120.58215 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99891 * 176.45861 * 15 14 13 17 17 C 1.40130 * 119.99810 * 356.73027 * 15 14 13 18 18 N 1.30703 * 120.00212 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99796 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47234 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47347 * 120.00094 * 19 17 15 22 22 H 1.48500 * 109.47142 * 239.99871 * 19 17 15 23 23 C 1.39433 * 120.31710 * 359.51872 * 8 7 6 24 24 C 1.37841 * 125.07905 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47330 * 270.02113 * 1 2 3 26 26 H 1.09001 * 109.47189 * 30.02321 * 1 2 3 27 27 H 1.09005 * 109.47087 * 150.02262 * 1 2 3 28 28 H 1.07998 * 125.02193 * 359.97438 * 3 2 1 29 29 H 1.07994 * 126.47447 * 179.97438 * 4 3 2 30 30 H 1.08004 * 120.01437 * 359.94571 * 6 5 4 31 31 H 1.08005 * 119.81847 * 180.23299 * 7 6 5 32 32 H 1.07997 * 119.38650 * 179.72086 * 11 10 9 33 33 H 1.08001 * 119.42397 * 179.97438 * 12 11 10 34 34 H 0.97004 * 120.00254 * 179.97438 * 18 17 15 35 35 H 1.08004 * 120.16873 * 180.23467 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2500 1.1181 0.0000 4 6 3.5489 0.7674 0.0006 5 6 3.5980 -0.6940 0.0003 6 6 4.6402 -1.6288 0.0011 7 6 4.3592 -2.9609 0.0049 8 6 3.0280 -3.4052 -0.0012 9 6 2.7368 -4.8517 -0.0014 10 7 3.4068 -5.6768 0.7994 11 6 3.1420 -6.9686 0.7868 12 6 2.1640 -7.4959 -0.0494 13 7 1.4697 -6.7232 -0.8557 14 6 1.7014 -5.4025 -0.8786 15 6 0.9672 -4.5616 -1.7348 16 1 1.1211 -3.4931 -1.7048 17 6 0.0320 -5.1101 -2.6227 18 7 -0.1585 -6.4028 -2.6550 19 14 -0.9424 -3.9938 -3.7601 20 1 -0.5429 -2.5822 -3.5299 21 1 -0.6654 -4.3620 -5.1718 22 1 -2.3930 -4.1497 -3.4834 23 6 1.9793 -2.4864 -0.0010 24 6 2.2572 -1.1280 0.0005 25 1 -0.3634 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.8823 2.1336 -0.0004 29 1 4.3951 1.4383 0.0003 30 1 5.6669 -1.2933 0.0013 31 1 5.1652 -3.6798 0.0093 32 1 3.6952 -7.6293 1.4377 33 1 1.9714 -8.5585 -0.0363 34 1 -0.8061 -6.7825 -3.2693 35 1 0.9557 -2.8310 -0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240571575.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:05 Heat of formation + Delta-G solvation = 103.642874 kcal Electronic energy + Delta-G solvation = -20703.820390 eV Core-core repulsion = 17667.153438 eV Total energy + Delta-G solvation = -3036.666952 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.75590 -38.75407 -36.40062 -34.22993 -32.76737 -31.94017 -30.56948 -29.66603 -27.81465 -26.15956 -25.83797 -23.00624 -22.20807 -21.44042 -20.37422 -19.52976 -17.74420 -16.70385 -16.08507 -15.87032 -15.12855 -14.97960 -14.82937 -14.29263 -13.71952 -13.56661 -13.15778 -12.91899 -12.62255 -12.53769 -12.44529 -12.15712 -11.65067 -11.54277 -11.49841 -11.11207 -10.92322 -10.65704 -10.40864 -10.07548 -9.92065 -9.60154 -9.25472 -8.99836 -8.02930 -7.50877 -7.37578 -6.96633 -6.62155 -4.77207 1.59575 2.16952 2.50618 2.86966 2.91657 2.96385 3.09349 3.18102 3.30520 3.70920 4.49285 4.61980 4.96196 5.06550 5.24280 5.34751 5.46852 5.58500 5.66636 5.73531 5.94361 5.98846 6.00726 6.14923 6.19918 6.26244 6.46484 6.49588 6.64115 6.80689 6.89441 6.96730 7.17014 7.28243 7.30692 7.50068 7.65110 7.70307 7.81841 7.95657 8.27692 8.57029 9.20904 9.77266 9.95685 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013965 B = 0.007633 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.582485 B = 3667.187495 C = 5253.570690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.490 5.490 3 C 0.035 3.965 4 C -0.207 4.207 5 C -0.124 4.124 6 C -0.084 4.084 7 C -0.121 4.121 8 C 0.050 3.950 9 C -0.031 4.031 10 N -0.408 5.408 11 C -0.127 4.127 12 C 0.091 3.909 13 N -0.461 5.461 14 C 0.221 3.779 15 C -0.396 4.396 16 H 0.104 0.896 17 C 0.063 3.937 18 N -0.698 5.698 19 Si 0.909 3.091 20 H -0.256 1.256 21 H -0.268 1.268 22 H -0.269 1.269 23 C -0.123 4.123 24 C 0.098 3.902 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.159 0.841 29 H 0.139 0.861 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.279 0.721 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.441 10.543 1.259 10.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.174 5.174 3 C -0.090 4.090 4 C -0.233 4.233 5 C -0.128 4.128 6 C -0.103 4.103 7 C -0.141 4.141 8 C 0.047 3.953 9 C -0.180 4.180 10 N -0.120 5.120 11 C -0.287 4.287 12 C -0.079 4.079 13 N -0.177 5.177 14 C 0.096 3.904 15 C -0.426 4.426 16 H 0.122 0.878 17 C -0.166 4.166 18 N -0.318 5.318 19 Si 0.732 3.268 20 H -0.179 1.179 21 H -0.193 1.193 22 H -0.194 1.194 23 C -0.145 4.145 24 C -0.006 4.006 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.177 0.823 29 H 0.156 0.844 30 H 0.132 0.868 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.091 0.909 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.955 10.311 1.142 10.418 hybrid contribution -0.513 0.219 -0.508 0.754 sum -1.467 10.530 0.634 10.651 Atomic orbital electron populations 1.21893 0.77780 1.04045 1.02594 1.43699 1.05502 1.04433 1.63793 1.21628 0.90631 0.90722 1.06019 1.21563 0.95488 0.93134 1.13116 1.19156 0.92220 0.93081 1.08335 1.20035 0.97144 0.91940 1.01194 1.20742 0.96042 0.94798 1.02532 1.17891 0.91626 0.90220 0.95570 1.21209 1.01742 0.91778 1.03293 1.67736 1.22683 1.03901 1.17671 1.22384 1.06048 0.92130 1.08124 1.23401 0.92547 0.99759 0.92208 1.69577 1.24879 1.03618 1.19625 1.20363 0.89592 0.89696 0.90779 1.20005 1.14045 0.95821 1.12733 0.87826 1.26266 0.97124 0.95506 0.97661 1.70088 1.23354 1.11814 1.26499 0.86220 0.79420 0.81258 0.79944 1.17899 1.19300 1.19372 1.20184 0.99962 0.88174 1.06142 1.18135 0.89836 0.87986 1.04690 0.91704 0.90479 0.89842 0.82319 0.84363 0.86818 0.86373 0.85684 0.85478 0.90919 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 11.02 59.85 0.66 1.59 16 2 N -0.49 -7.60 3.18 -121.80 -0.39 -7.98 16 3 C 0.04 0.47 11.29 -16.73 -0.19 0.28 16 4 C -0.21 -3.09 11.08 -37.69 -0.42 -3.51 16 5 C -0.12 -2.26 6.37 -105.01 -0.67 -2.93 16 6 C -0.08 -1.53 10.03 -39.67 -0.40 -1.93 16 7 C -0.12 -2.49 9.59 -39.54 -0.38 -2.87 16 8 C 0.05 1.13 5.42 -104.87 -0.57 0.56 16 9 C -0.03 -0.80 6.53 -80.22 -0.52 -1.32 16 10 N -0.41 -10.22 10.32 -7.86 -0.08 -10.30 16 11 C -0.13 -2.95 11.17 -17.23 -0.19 -3.15 16 12 C 0.09 2.17 11.17 -17.39 -0.19 1.98 16 13 N -0.46 -12.41 8.08 -9.55 -0.08 -12.49 16 14 C 0.22 5.92 6.67 -82.64 -0.55 5.37 16 15 C -0.40 -10.01 7.98 -37.95 -0.30 -10.31 16 16 H 0.10 2.48 4.86 -52.48 -0.25 2.23 16 17 C 0.06 1.49 5.50 -17.32 -0.10 1.40 16 18 N -0.70 -17.50 11.51 55.56 0.64 -16.86 16 19 Si 0.91 17.37 29.56 -169.99 -5.02 12.35 16 20 H -0.26 -4.79 7.11 56.52 0.40 -4.38 16 21 H -0.27 -5.10 7.11 56.52 0.40 -4.69 16 22 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 23 C -0.12 -2.58 7.49 -38.99 -0.29 -2.88 16 24 C 0.10 1.86 6.80 -83.99 -0.57 1.29 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 28 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 31 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 32 H 0.13 2.51 8.06 -52.49 -0.42 2.08 16 33 H 0.13 2.59 8.06 -52.49 -0.42 2.17 16 34 H 0.28 6.25 8.29 -40.82 -0.34 5.92 16 35 H 0.13 2.71 6.62 -52.48 -0.35 2.36 16 LS Contribution 304.56 15.07 4.59 4.59 Total: -1.00 -30.71 304.56 -8.57 -39.27 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -3.54 Total: 7.83 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -4.68 Total: -16.41 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.09 Total: -47.63 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.02 Total: 12.35 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.71 -8.57 -39.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240571575.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.916 kcal (2) G-P(sol) polarization free energy of solvation -30.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds