Wall clock time and date at job start Tue Mar 31 2020 01:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36617 * 125.07203 * 2 1 4 4 C 1.34537 * 109.95939 * 179.97438 * 3 2 1 5 5 C 1.46217 * 107.04022 * 0.02562 * 4 3 2 6 6 C 1.39999 * 133.81712 * 180.02562 * 5 4 3 7 7 C 1.36148 * 119.97699 * 179.79015 * 6 5 4 8 8 C 1.40339 * 120.36924 * 0.43667 * 7 6 5 9 9 C 1.47550 * 119.83986 * 179.79919 * 8 7 6 10 10 N 1.33079 * 120.55412 * 44.05938 * 9 8 7 11 11 C 1.31869 * 120.03242 * 180.28184 * 10 9 8 12 12 C 1.39055 * 121.22842 * 359.73817 * 11 10 9 13 13 N 1.31506 * 121.14565 * 359.97438 * 12 11 10 14 14 C 1.34103 * 119.86014 * 359.97438 * 13 12 11 15 15 C 1.40691 * 120.58215 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99891 * 176.45861 * 15 14 13 17 17 C 1.40130 * 119.99810 * 356.73027 * 15 14 13 18 18 N 1.30703 * 120.00212 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99796 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47234 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47347 * 120.00094 * 19 17 15 22 22 H 1.48500 * 109.47142 * 239.99871 * 19 17 15 23 23 C 1.39433 * 120.31710 * 359.51872 * 8 7 6 24 24 C 1.37841 * 125.07905 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47330 * 270.02113 * 1 2 3 26 26 H 1.09001 * 109.47189 * 30.02321 * 1 2 3 27 27 H 1.09005 * 109.47087 * 150.02262 * 1 2 3 28 28 H 1.07998 * 125.02193 * 359.97438 * 3 2 1 29 29 H 1.07994 * 126.47447 * 179.97438 * 4 3 2 30 30 H 1.08004 * 120.01437 * 359.94571 * 6 5 4 31 31 H 1.08005 * 119.81847 * 180.23299 * 7 6 5 32 32 H 1.07997 * 119.38650 * 179.72086 * 11 10 9 33 33 H 1.08001 * 119.42397 * 179.97438 * 12 11 10 34 34 H 0.97004 * 120.00254 * 179.97438 * 18 17 15 35 35 H 1.08004 * 120.16873 * 180.23467 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2500 1.1181 0.0000 4 6 3.5489 0.7674 0.0006 5 6 3.5980 -0.6940 0.0003 6 6 4.6402 -1.6288 0.0011 7 6 4.3592 -2.9609 0.0049 8 6 3.0280 -3.4052 -0.0012 9 6 2.7368 -4.8517 -0.0014 10 7 3.4068 -5.6768 0.7994 11 6 3.1420 -6.9686 0.7868 12 6 2.1640 -7.4959 -0.0494 13 7 1.4697 -6.7232 -0.8557 14 6 1.7014 -5.4025 -0.8786 15 6 0.9672 -4.5616 -1.7348 16 1 1.1211 -3.4931 -1.7048 17 6 0.0320 -5.1101 -2.6227 18 7 -0.1585 -6.4028 -2.6550 19 14 -0.9424 -3.9938 -3.7601 20 1 -0.5429 -2.5822 -3.5299 21 1 -0.6654 -4.3620 -5.1718 22 1 -2.3930 -4.1497 -3.4834 23 6 1.9793 -2.4864 -0.0010 24 6 2.2572 -1.1280 0.0005 25 1 -0.3634 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.8823 2.1336 -0.0004 29 1 4.3951 1.4383 0.0003 30 1 5.6669 -1.2933 0.0013 31 1 5.1652 -3.6798 0.0093 32 1 3.6952 -7.6293 1.4377 33 1 1.9714 -8.5585 -0.0363 34 1 -0.8061 -6.7825 -3.2693 35 1 0.9557 -2.8310 -0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240571575.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:04 Heat of formation + Delta-G solvation = 86.260351 kcal Electronic energy + Delta-G solvation = -20704.574153 eV Core-core repulsion = 17667.153438 eV Total energy + Delta-G solvation = -3037.420714 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.04630 -40.58298 -37.86590 -36.06488 -34.25708 -33.62894 -32.14411 -31.11422 -29.38810 -27.92750 -26.99796 -24.68207 -23.96044 -22.97314 -21.86699 -20.81952 -19.59192 -18.11856 -17.69387 -17.35502 -16.84569 -16.50249 -16.10559 -15.94180 -15.19700 -15.02335 -14.70241 -14.43998 -14.27203 -13.78381 -13.67390 -13.34848 -13.22979 -13.07966 -13.06748 -12.67211 -12.43662 -12.11001 -11.93874 -11.78672 -11.56950 -11.52451 -11.05448 -10.44243 -9.74823 -9.36480 -8.87504 -8.47871 -8.31818 -6.66134 0.06388 0.58932 0.83206 1.22049 1.32909 1.48405 1.49893 1.96342 2.05636 2.10925 2.70181 3.07518 3.69428 3.76651 3.93206 4.06123 4.11877 4.17085 4.35019 4.36752 4.47971 4.51934 4.67679 4.70916 4.74200 4.80524 4.90750 5.02966 5.04997 5.14226 5.21932 5.31442 5.64779 5.80861 5.87853 5.93945 6.00426 6.10345 6.38067 6.43638 6.58686 6.69164 7.32533 7.88452 8.19603 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013965 B = 0.007633 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.582485 B = 3667.187495 C = 5253.570690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.492 5.492 3 C 0.057 3.943 4 C -0.222 4.222 5 C -0.134 4.134 6 C -0.078 4.078 7 C -0.139 4.139 8 C 0.012 3.988 9 C -0.042 4.042 10 N -0.427 5.427 11 C -0.133 4.133 12 C 0.078 3.922 13 N -0.494 5.494 14 C 0.188 3.812 15 C -0.415 4.415 16 H 0.108 0.892 17 C 0.019 3.981 18 N -0.735 5.735 19 Si 0.985 3.015 20 H -0.250 1.250 21 H -0.263 1.263 22 H -0.256 1.256 23 C -0.125 4.125 24 C 0.075 3.925 25 H 0.078 0.922 26 H 0.116 0.884 27 H 0.067 0.933 28 H 0.211 0.789 29 H 0.169 0.831 30 H 0.145 0.855 31 H 0.111 0.889 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.288 0.712 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.992 14.040 0.838 14.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.176 5.176 3 C -0.068 4.068 4 C -0.247 4.247 5 C -0.139 4.139 6 C -0.096 4.096 7 C -0.159 4.159 8 C 0.010 3.990 9 C -0.191 4.191 10 N -0.139 5.139 11 C -0.292 4.292 12 C -0.091 4.091 13 N -0.211 5.211 14 C 0.062 3.938 15 C -0.444 4.444 16 H 0.126 0.874 17 C -0.205 4.205 18 N -0.355 5.355 19 Si 0.804 3.196 20 H -0.173 1.173 21 H -0.188 1.188 22 H -0.180 1.180 23 C -0.147 4.147 24 C -0.031 4.031 25 H 0.096 0.904 26 H 0.134 0.866 27 H 0.086 0.914 28 H 0.228 0.772 29 H 0.186 0.814 30 H 0.163 0.837 31 H 0.129 0.871 32 H 0.175 0.825 33 H 0.175 0.825 34 H 0.100 0.900 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.502 13.797 0.747 13.898 hybrid contribution -0.326 -0.757 -0.297 0.876 sum -1.828 13.040 0.450 13.175 Atomic orbital electron populations 1.22174 0.75774 1.05201 1.03889 1.44069 1.06943 1.03865 1.62719 1.22490 0.89990 0.91986 1.02314 1.21948 0.97402 0.91348 1.13975 1.19672 0.91755 0.95243 1.07255 1.20322 0.98925 0.90898 0.99482 1.20720 0.94946 0.96019 1.04208 1.17962 0.93138 0.89225 0.98710 1.21638 1.01326 0.93328 1.02764 1.67804 1.23337 1.04676 1.18097 1.22908 1.05951 0.92184 1.08174 1.23893 0.92372 1.00995 0.91828 1.69530 1.26256 1.04187 1.21146 1.20827 0.90812 0.90210 0.91931 1.20288 1.14796 0.96027 1.13311 0.87427 1.27225 0.97588 0.96987 0.98729 1.70156 1.24185 1.13692 1.27508 0.85101 0.78085 0.79089 0.77371 1.17259 1.18760 1.17993 1.20018 0.98740 0.89415 1.06511 1.18197 0.91367 0.88098 1.05409 0.90379 0.86608 0.91438 0.77215 0.81391 0.83714 0.87101 0.82519 0.82528 0.90044 0.86991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.46 11.02 127.77 1.41 2.87 16 2 N -0.49 -13.82 3.18 -539.25 -1.71 -15.54 16 3 C 0.06 1.26 11.29 83.10 0.94 2.20 16 4 C -0.22 -5.72 11.08 23.50 0.26 -5.46 16 5 C -0.13 -4.68 6.37 -20.12 -0.13 -4.80 16 6 C -0.08 -2.78 10.03 22.21 0.22 -2.56 16 7 C -0.14 -5.90 9.59 22.29 0.21 -5.69 16 8 C 0.01 0.59 5.42 -20.02 -0.11 0.48 16 9 C -0.04 -2.24 6.53 43.55 0.28 -1.95 16 10 N -0.43 -22.31 10.32 -178.79 -1.85 -24.16 16 11 C -0.13 -6.35 11.17 84.88 0.95 -5.41 16 12 C 0.08 3.84 11.17 84.94 0.95 4.79 16 13 N -0.49 -27.84 8.08 -184.14 -1.49 -29.33 16 14 C 0.19 10.59 6.67 41.54 0.28 10.86 16 15 C -0.41 -21.87 7.98 23.33 0.19 -21.69 16 16 H 0.11 5.40 4.86 -2.91 -0.01 5.39 16 17 C 0.02 0.94 5.50 85.32 0.47 1.41 16 18 N -0.74 -37.95 11.51 21.86 0.25 -37.70 16 19 Si 0.99 35.68 29.56 68.60 2.03 37.71 16 20 H -0.25 -8.66 7.11 99.48 0.71 -7.96 16 21 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 22 H -0.26 -8.66 7.11 99.48 0.71 -7.96 16 23 C -0.12 -5.45 7.49 22.66 0.17 -5.28 16 24 C 0.08 2.80 6.80 38.96 0.26 3.06 16 25 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.12 1.50 8.14 -2.39 -0.02 1.49 16 27 H 0.07 1.63 8.10 -2.38 -0.02 1.61 16 28 H 0.21 2.43 8.06 -2.91 -0.02 2.40 16 29 H 0.17 3.25 8.06 -2.91 -0.02 3.22 16 30 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 31 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 32 H 0.16 6.26 8.06 -2.91 -0.02 6.24 16 33 H 0.16 6.48 8.06 -2.91 -0.02 6.46 16 34 H 0.29 13.19 8.29 -92.71 -0.77 12.42 16 35 H 0.11 5.06 6.62 -2.91 -0.02 5.04 16 Total: -1.00 -70.90 304.56 4.71 -66.19 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 1.12 Total: 29.97 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 6.35 Total: -27.16 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -4.79 Total: -106.72 kcal Atomic # 14 Polarization: 35.68 SS G_CDS: 2.03 Total: 37.71 kcal Total: -70.90 4.71 -66.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240571575.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.450 kcal (2) G-P(sol) polarization free energy of solvation -70.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds