Wall clock time and date at job start Tue Mar 31 2020 01:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36933 * 124.96131 * 2 1 4 4 C 1.34193 * 109.94679 * 179.97438 * 3 2 1 5 5 C 1.46485 * 106.83032 * 0.02562 * 4 3 2 6 6 C 1.39389 * 134.18409 * 180.02562 * 5 4 3 7 7 C 1.39668 * 117.93510 * 179.31914 * 6 5 4 8 8 C 1.47917 * 120.45539 * 180.18920 * 7 6 5 9 9 C 1.39931 * 119.45567 * 185.37008 * 8 7 6 10 10 C 1.36573 * 119.46663 * 179.97438 * 9 8 7 11 11 C 1.41314 * 118.41972 * 359.97438 * 10 9 8 12 12 C 1.41052 * 120.54963 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99851 * 155.68184 * 12 11 10 14 14 C 1.39988 * 120.00154 * 335.67938 * 12 11 10 15 15 N 1.30807 * 120.00142 * 343.24683 * 14 12 11 16 16 Si 1.86798 * 120.00135 * 163.24753 * 14 12 11 17 17 H 1.48502 * 109.47185 * 60.00218 * 16 14 12 18 18 H 1.48504 * 109.47410 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47045 * 300.00078 * 16 14 12 20 20 C 1.40942 * 118.89785 * 0.02562 * 11 10 9 21 21 N 1.31266 * 120.40332 * 359.74054 * 20 11 10 22 22 C 1.40032 * 119.08767 * 0.55615 * 7 6 5 23 23 N 1.31312 * 121.37733 * 359.61152 * 22 7 6 24 24 C 1.32820 * 121.89625 * 0.02706 * 23 22 7 25 25 H 1.09001 * 109.47185 * 90.02359 * 1 2 3 26 26 H 1.09004 * 109.46869 * 330.02693 * 1 2 3 27 27 H 1.08995 * 109.47251 * 210.02687 * 1 2 3 28 28 H 1.07995 * 125.02941 * 359.94162 * 3 2 1 29 29 H 1.07993 * 126.58695 * 180.02562 * 4 3 2 30 30 H 1.08006 * 121.03339 * 359.95315 * 6 5 4 31 31 H 1.08000 * 120.26497 * 359.97438 * 9 8 7 32 32 H 1.07998 * 120.78761 * 180.02562 * 10 9 8 33 33 H 0.97001 * 120.00105 * 180.02562 * 15 14 12 34 34 H 1.08001 * 119.79705 * 179.97438 * 20 11 10 35 35 H 1.08001 * 119.30986 * 179.63712 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2496 1.1222 0.0000 4 6 3.5457 0.7746 0.0006 5 6 3.5921 -0.6895 0.0003 6 6 4.6220 -1.6289 0.0011 7 6 4.2739 -2.9814 0.0152 8 6 5.3219 -4.0253 0.0209 9 6 4.9529 -5.3713 -0.0790 10 6 5.9204 -6.3353 -0.0742 11 6 7.2707 -5.9324 0.0320 12 6 8.3060 -6.8903 0.0418 13 1 9.3026 -6.6115 -0.2674 14 6 8.0419 -8.2023 0.4524 15 7 6.9536 -8.4700 1.1269 16 14 9.2436 -9.5708 0.0371 17 1 10.5672 -9.2665 0.6379 18 1 8.7367 -10.8565 0.5804 19 1 9.3820 -9.6773 -1.4376 20 6 7.5656 -4.5576 0.1290 21 7 6.6001 -3.6684 0.1154 22 6 2.9192 -3.3357 0.0159 23 7 1.9740 -2.4241 0.0113 24 6 2.2518 -1.1253 0.0052 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3633 0.8903 0.5134 27 1 -0.3633 -0.8897 0.5142 28 1 1.8801 2.1370 -0.0009 29 1 4.3921 1.4454 0.0011 30 1 5.6570 -1.3203 0.0014 31 1 3.9114 -5.6457 -0.1592 32 1 5.6596 -7.3805 -0.1506 33 1 6.7707 -9.3790 1.4117 34 1 8.5926 -4.2335 0.2112 35 1 2.6459 -4.3806 0.0209 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240822013.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:05 Heat of formation + Delta-G solvation = 97.001061 kcal Electronic energy + Delta-G solvation = -19767.979171 eV Core-core repulsion = 16731.024209 eV Total energy + Delta-G solvation = -3036.954962 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.14599 -38.62818 -37.25184 -34.32503 -33.10271 -31.72013 -30.78240 -29.70307 -28.56349 -26.58870 -25.19375 -23.39998 -22.44796 -21.32159 -20.43738 -19.99835 -17.54589 -17.08416 -16.54271 -15.93936 -15.41205 -15.21681 -14.83640 -14.21421 -13.81079 -13.35878 -13.28646 -13.20210 -12.75583 -12.52538 -12.46658 -12.25424 -12.10059 -11.72413 -11.51998 -11.45387 -11.29458 -11.02791 -10.71360 -9.99977 -9.90903 -9.47452 -8.93602 -8.41407 -8.34277 -8.09065 -7.78840 -7.19349 -6.96856 -4.56396 1.42600 1.57656 2.67952 2.78611 2.92312 2.93442 2.94555 2.96717 3.17087 3.72963 4.27133 4.63561 4.64534 4.78289 4.88351 5.18113 5.25275 5.42360 5.53102 5.57131 5.62914 5.66395 5.89043 6.04915 6.14087 6.30567 6.50910 6.63862 6.74107 6.82641 6.92194 6.96081 7.04694 7.18220 7.31858 7.41726 7.65696 7.74600 7.85398 8.29560 8.42971 8.49864 8.59842 9.53336 9.87315 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.049574 B = 0.003355 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.671763 B = 8344.889707 C = 8838.672096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.482 5.482 3 C 0.048 3.952 4 C -0.196 4.196 5 C -0.148 4.148 6 C -0.031 4.031 7 C -0.058 4.058 8 C 0.004 3.996 9 C -0.124 4.124 10 C -0.141 4.141 11 C 0.068 3.932 12 C -0.434 4.434 13 H 0.087 0.913 14 C 0.072 3.928 15 N -0.777 5.777 16 Si 0.916 3.084 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.261 1.261 20 C -0.015 4.015 21 N -0.450 5.450 22 C 0.133 3.867 23 N -0.501 5.501 24 C 0.259 3.741 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.169 0.831 29 H 0.147 0.853 30 H 0.139 0.861 31 H 0.102 0.898 32 H 0.128 0.872 33 H 0.287 0.713 34 H 0.129 0.871 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.972 9.773 -1.566 12.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.170 5.170 3 C -0.077 4.077 4 C -0.222 4.222 5 C -0.154 4.154 6 C -0.058 4.058 7 C -0.062 4.062 8 C -0.130 4.130 9 C -0.144 4.144 10 C -0.166 4.166 11 C 0.063 3.937 12 C -0.463 4.463 13 H 0.105 0.895 14 C -0.149 4.149 15 N -0.400 5.400 16 Si 0.740 3.260 17 H -0.186 1.186 18 H -0.201 1.201 19 H -0.185 1.185 20 C -0.181 4.181 21 N -0.157 5.157 22 C -0.034 4.034 23 N -0.213 5.213 24 C 0.029 3.971 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.186 0.814 29 H 0.164 0.836 30 H 0.157 0.843 31 H 0.120 0.880 32 H 0.145 0.855 33 H 0.099 0.901 34 H 0.147 0.853 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.187 10.276 -1.376 13.852 hybrid contribution 1.042 -1.392 -0.110 1.742 sum -8.146 8.883 -1.486 12.144 Atomic orbital electron populations 1.21850 0.77397 1.03826 1.02614 1.43476 1.05770 1.03394 1.64336 1.21669 0.90394 0.90444 1.05175 1.21625 0.95917 0.92826 1.11843 1.19854 0.93225 0.94432 1.07916 1.21032 0.98661 0.90633 0.95472 1.19357 0.93129 0.92841 1.00903 1.18519 0.89505 0.89835 1.15190 1.21271 0.98656 0.93294 1.01202 1.21322 0.92506 0.99114 1.03661 1.18608 0.93499 0.93107 0.88460 1.19643 0.97117 0.93313 1.36228 0.89538 1.26078 0.96140 1.00383 0.92283 1.69776 1.23993 1.22719 1.23547 0.86214 0.80732 0.78781 0.80276 1.18621 1.20066 1.18503 1.22443 0.96382 0.89408 1.09819 1.66903 0.99954 1.39431 1.09445 1.22543 0.87432 0.97384 0.96062 1.66329 1.38412 0.98785 1.17774 1.18356 0.87861 0.87075 1.03812 0.91774 0.90482 0.89859 0.81381 0.83573 0.84320 0.88011 0.85471 0.90133 0.85310 0.82361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 11.07 59.84 0.66 1.49 16 2 N -0.48 -6.69 3.17 -123.61 -0.39 -7.09 16 3 C 0.05 0.57 11.28 -16.70 -0.19 0.38 16 4 C -0.20 -2.76 11.09 -37.69 -0.42 -3.17 16 5 C -0.15 -2.65 6.38 -105.12 -0.67 -3.33 16 6 C -0.03 -0.60 9.73 -38.62 -0.38 -0.98 16 7 C -0.06 -1.21 5.89 -104.73 -0.62 -1.83 16 8 C 0.00 0.10 6.73 -82.74 -0.56 -0.46 16 9 C -0.12 -2.83 9.38 -39.55 -0.37 -3.20 16 10 C -0.14 -3.49 8.73 -39.01 -0.34 -3.83 16 11 C 0.07 1.72 5.59 -106.64 -0.60 1.13 16 12 C -0.43 -10.64 9.06 -37.86 -0.34 -10.98 16 13 H 0.09 1.99 7.90 -52.49 -0.41 1.58 16 14 C 0.07 1.66 5.18 -17.33 -0.09 1.57 16 15 N -0.78 -18.59 10.91 55.55 0.61 -17.99 16 16 Si 0.92 17.16 29.59 -169.99 -5.03 12.13 16 17 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 18 H -0.28 -5.05 7.11 56.52 0.40 -4.65 16 19 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 20 C -0.02 -0.38 10.97 -16.77 -0.18 -0.56 16 21 N -0.45 -10.91 9.47 -9.10 -0.09 -11.00 16 22 C 0.13 2.53 10.56 -17.10 -0.18 2.34 16 23 N -0.50 -9.38 10.37 -11.93 -0.12 -9.51 16 24 C 0.26 4.62 7.89 -155.59 -1.23 3.39 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.51 8.13 -51.93 -0.42 0.09 16 27 H 0.08 0.87 8.13 -51.93 -0.42 0.44 16 28 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.14 2.70 7.62 -52.48 -0.40 2.30 16 31 H 0.10 2.01 6.19 -52.49 -0.32 1.68 16 32 H 0.13 3.17 6.20 -52.49 -0.33 2.84 16 33 H 0.29 6.22 8.30 -40.82 -0.34 5.89 16 34 H 0.13 2.88 8.06 -52.49 -0.42 2.45 16 35 H 0.16 2.71 6.17 -52.49 -0.32 2.38 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -29.17 305.34 -9.38 -38.55 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -3.46 Total: 8.32 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -5.50 Total: -18.03 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.00 Total: -45.58 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.17 -9.38 -38.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240822013.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.555 kcal (2) G-P(sol) polarization free energy of solvation -29.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds