Wall clock time and date at job start Tue Mar 31 2020 01:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36933 * 124.96131 * 2 1 4 4 C 1.34193 * 109.94679 * 179.97438 * 3 2 1 5 5 C 1.46485 * 106.83032 * 0.02562 * 4 3 2 6 6 C 1.39389 * 134.18409 * 180.02562 * 5 4 3 7 7 C 1.39668 * 117.93510 * 179.31914 * 6 5 4 8 8 C 1.47917 * 120.45539 * 180.18920 * 7 6 5 9 9 C 1.39931 * 119.45567 * 185.37008 * 8 7 6 10 10 C 1.36573 * 119.46663 * 179.97438 * 9 8 7 11 11 C 1.41314 * 118.41972 * 359.97438 * 10 9 8 12 12 C 1.41052 * 120.54963 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99851 * 155.68184 * 12 11 10 14 14 C 1.39988 * 120.00154 * 335.67938 * 12 11 10 15 15 N 1.30807 * 120.00142 * 343.24683 * 14 12 11 16 16 Si 1.86798 * 120.00135 * 163.24753 * 14 12 11 17 17 H 1.48502 * 109.47185 * 60.00218 * 16 14 12 18 18 H 1.48504 * 109.47410 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47045 * 300.00078 * 16 14 12 20 20 C 1.40942 * 118.89785 * 0.02562 * 11 10 9 21 21 N 1.31266 * 120.40332 * 359.74054 * 20 11 10 22 22 C 1.40032 * 119.08767 * 0.55615 * 7 6 5 23 23 N 1.31312 * 121.37733 * 359.61152 * 22 7 6 24 24 C 1.32820 * 121.89625 * 0.02706 * 23 22 7 25 25 H 1.09001 * 109.47185 * 90.02359 * 1 2 3 26 26 H 1.09004 * 109.46869 * 330.02693 * 1 2 3 27 27 H 1.08995 * 109.47251 * 210.02687 * 1 2 3 28 28 H 1.07995 * 125.02941 * 359.94162 * 3 2 1 29 29 H 1.07993 * 126.58695 * 180.02562 * 4 3 2 30 30 H 1.08006 * 121.03339 * 359.95315 * 6 5 4 31 31 H 1.08000 * 120.26497 * 359.97438 * 9 8 7 32 32 H 1.07998 * 120.78761 * 180.02562 * 10 9 8 33 33 H 0.97001 * 120.00105 * 180.02562 * 15 14 12 34 34 H 1.08001 * 119.79705 * 179.97438 * 20 11 10 35 35 H 1.08001 * 119.30986 * 179.63712 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2496 1.1222 0.0000 4 6 3.5457 0.7746 0.0006 5 6 3.5921 -0.6895 0.0003 6 6 4.6220 -1.6289 0.0011 7 6 4.2739 -2.9814 0.0152 8 6 5.3219 -4.0253 0.0209 9 6 4.9529 -5.3713 -0.0790 10 6 5.9204 -6.3353 -0.0742 11 6 7.2707 -5.9324 0.0320 12 6 8.3060 -6.8903 0.0418 13 1 9.3026 -6.6115 -0.2674 14 6 8.0419 -8.2023 0.4524 15 7 6.9536 -8.4700 1.1269 16 14 9.2436 -9.5708 0.0371 17 1 10.5672 -9.2665 0.6379 18 1 8.7367 -10.8565 0.5804 19 1 9.3820 -9.6773 -1.4376 20 6 7.5656 -4.5576 0.1290 21 7 6.6001 -3.6684 0.1154 22 6 2.9192 -3.3357 0.0159 23 7 1.9740 -2.4241 0.0113 24 6 2.2518 -1.1253 0.0052 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3633 0.8903 0.5134 27 1 -0.3633 -0.8897 0.5142 28 1 1.8801 2.1370 -0.0009 29 1 4.3921 1.4454 0.0011 30 1 5.6570 -1.3203 0.0014 31 1 3.9114 -5.6457 -0.1592 32 1 5.6596 -7.3805 -0.1506 33 1 6.7707 -9.3790 1.4117 34 1 8.5926 -4.2335 0.2112 35 1 2.6459 -4.3806 0.0209 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240822013.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:04 Heat of formation + Delta-G solvation = 82.053200 kcal Electronic energy + Delta-G solvation = -19768.627359 eV Core-core repulsion = 16731.024209 eV Total energy + Delta-G solvation = -3037.603150 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.38410 -40.35721 -38.67136 -36.08642 -34.34783 -33.21942 -32.60778 -31.19596 -29.97752 -27.85806 -26.69332 -24.83146 -24.03866 -23.02253 -22.04144 -21.16191 -19.34853 -18.30660 -17.90882 -17.57599 -16.79765 -16.50554 -16.39481 -15.79078 -15.44325 -14.76324 -14.67223 -14.31667 -14.05501 -14.01847 -13.82348 -13.77237 -13.50068 -13.20303 -13.09614 -12.99096 -12.61205 -12.51900 -12.23084 -11.75057 -11.41620 -11.10352 -10.38525 -10.25118 -10.01553 -9.86807 -9.03315 -8.81160 -8.62986 -6.41721 -0.01317 0.12987 0.96666 1.14949 1.40163 1.52149 1.58869 1.71513 1.82093 2.16608 2.62698 3.04330 3.40904 3.70648 3.75323 3.82767 3.93209 4.13013 4.26655 4.36056 4.48273 4.48987 4.63739 4.75488 4.77580 4.83181 4.92529 4.97966 5.02030 5.13976 5.32526 5.48227 5.55599 5.56628 5.81657 5.90549 6.01071 6.14969 6.29847 6.45043 6.67849 6.73995 7.04067 7.67145 8.16609 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.049574 B = 0.003355 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.671763 B = 8344.889707 C = 8838.672096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.480 5.480 3 C 0.080 3.920 4 C -0.221 4.221 5 C -0.167 4.167 6 C -0.038 4.038 7 C -0.086 4.086 8 C 0.002 3.998 9 C -0.128 4.128 10 C -0.158 4.158 11 C 0.042 3.958 12 C -0.465 4.465 13 H 0.092 0.908 14 C 0.035 3.965 15 N -0.808 5.808 16 Si 0.991 3.009 17 H -0.256 1.256 18 H -0.266 1.266 19 H -0.258 1.258 20 C -0.035 4.035 21 N -0.463 5.463 22 C 0.127 3.873 23 N -0.505 5.505 24 C 0.241 3.759 25 H 0.077 0.923 26 H 0.118 0.882 27 H 0.072 0.928 28 H 0.226 0.774 29 H 0.168 0.832 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.121 0.879 33 H 0.296 0.704 34 H 0.140 0.860 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.607 11.629 -1.741 15.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.168 5.168 3 C -0.045 4.045 4 C -0.246 4.246 5 C -0.174 4.174 6 C -0.066 4.066 7 C -0.091 4.091 8 C -0.133 4.133 9 C -0.148 4.148 10 C -0.183 4.183 11 C 0.037 3.963 12 C -0.493 4.493 13 H 0.110 0.890 14 C -0.183 4.183 15 N -0.432 5.432 16 Si 0.811 3.189 17 H -0.180 1.180 18 H -0.191 1.191 19 H -0.183 1.183 20 C -0.199 4.199 21 N -0.170 5.170 22 C -0.040 4.040 23 N -0.218 5.218 24 C 0.009 3.991 25 H 0.096 0.904 26 H 0.136 0.864 27 H 0.091 0.909 28 H 0.243 0.757 29 H 0.185 0.815 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.107 0.893 34 H 0.157 0.843 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.841 12.160 -1.548 16.364 hybrid contribution 1.317 -1.671 -0.043 2.128 sum -9.524 10.489 -1.590 14.257 Atomic orbital electron populations 1.22177 0.74700 1.05388 1.04005 1.43940 1.07514 1.02527 1.62769 1.22580 0.89317 0.91901 1.00655 1.21971 0.98096 0.90902 1.13660 1.20248 0.92929 0.96539 1.07637 1.21059 0.98962 0.90895 0.95643 1.19328 0.93269 0.92799 1.03684 1.18988 0.89773 0.90845 1.13732 1.21541 0.99792 0.92972 1.00453 1.21375 0.92962 0.99158 1.04829 1.18911 0.94250 0.93780 0.89349 1.19921 0.97308 0.94480 1.37628 0.89041 1.26944 0.97891 1.02143 0.91366 1.69814 1.25575 1.23767 1.24003 0.85101 0.78296 0.75615 0.79912 1.18013 1.19051 1.18259 1.22666 0.97086 0.89477 1.10623 1.66941 1.00510 1.39556 1.10038 1.22639 0.86809 0.98221 0.96310 1.66370 1.38042 0.99463 1.17884 1.18773 0.88980 0.87667 1.03712 0.90436 0.86388 0.90948 0.75721 0.81451 0.85185 0.85298 0.86163 0.89287 0.84266 0.81159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 11.07 127.77 1.41 2.60 16 2 N -0.48 -11.59 3.17 -544.98 -1.73 -13.32 16 3 C 0.08 1.51 11.28 82.97 0.94 2.45 16 4 C -0.22 -5.59 11.09 23.50 0.26 -5.33 16 5 C -0.17 -5.85 6.38 -20.19 -0.13 -5.98 16 6 C -0.04 -1.55 9.73 22.89 0.22 -1.32 16 7 C -0.09 -3.70 5.89 -19.93 -0.12 -3.81 16 8 C 0.00 0.11 6.73 41.94 0.28 0.39 16 9 C -0.13 -6.03 9.38 22.29 0.21 -5.82 16 10 C -0.16 -8.15 8.73 22.64 0.20 -7.95 16 11 C 0.04 2.21 5.59 -21.17 -0.12 2.10 16 12 C -0.47 -23.58 9.06 23.38 0.21 -23.37 16 13 H 0.09 4.36 7.90 -2.91 -0.02 4.33 16 14 C 0.03 1.62 5.18 85.27 0.44 2.06 16 15 N -0.81 -39.53 10.91 21.83 0.24 -39.30 16 16 Si 0.99 35.21 29.59 68.60 2.03 37.24 16 17 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 18 H -0.27 -8.95 7.11 99.48 0.71 -8.25 16 19 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 20 C -0.03 -1.78 10.97 85.44 0.94 -0.84 16 21 N -0.46 -23.44 9.47 -182.72 -1.73 -25.17 16 22 C 0.13 4.89 10.56 85.21 0.90 5.79 16 23 N -0.51 -18.65 10.37 -191.67 -1.99 -20.63 16 24 C 0.24 8.21 7.89 133.95 1.06 9.26 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 26 H 0.12 0.88 8.13 -2.38 -0.02 0.86 16 27 H 0.07 1.30 8.13 -2.39 -0.02 1.28 16 28 H 0.23 1.64 8.06 -2.91 -0.02 1.62 16 29 H 0.17 3.39 8.06 -2.91 -0.02 3.36 16 30 H 0.13 5.29 7.62 -2.91 -0.02 5.27 16 31 H 0.13 5.19 6.19 -2.91 -0.02 5.17 16 32 H 0.12 6.26 6.20 -2.91 -0.02 6.24 16 33 H 0.30 12.97 8.30 -92.71 -0.77 12.20 16 34 H 0.14 6.56 8.06 -2.91 -0.02 6.53 16 35 H 0.17 5.88 6.17 -2.91 -0.02 5.86 16 Total: -1.00 -66.54 305.34 4.66 -61.88 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 1.12 Total: 29.09 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: 6.71 Total: -29.79 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -5.21 Total: -98.42 kcal Atomic # 14 Polarization: 35.21 SS G_CDS: 2.03 Total: 37.24 kcal Total: -66.54 4.66 -61.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240822013.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.935 kcal (2) G-P(sol) polarization free energy of solvation -66.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds