Wall clock time and date at job start Tue Mar 31 2020 01:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36910 * 124.97773 * 2 1 4 4 C 1.34210 * 109.93597 * 179.97438 * 3 2 1 5 5 C 1.46444 * 106.85262 * 359.97438 * 4 3 2 6 6 C 1.39525 * 134.20332 * 179.97438 * 5 4 3 7 7 C 1.39316 * 117.95599 * 180.02562 * 6 5 4 8 8 C 1.48427 * 120.42171 * 179.97438 * 7 6 5 9 9 C 1.39701 * 120.41072 * 359.72230 * 8 7 6 10 10 N 1.31910 * 121.15300 * 179.76760 * 9 8 7 11 11 C 1.31528 * 122.11528 * 0.49548 * 10 9 8 12 12 C 1.40770 * 120.66703 * 359.77476 * 11 10 9 13 13 C 1.41430 * 120.60487 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00238 * 23.50116 * 13 12 11 15 15 C 1.39943 * 119.99732 * 203.50397 * 13 12 11 16 16 N 1.30830 * 119.99895 * 17.55315 * 15 13 12 17 17 Si 1.86792 * 119.99983 * 197.55670 * 15 13 12 18 18 H 1.48507 * 109.47144 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47370 * 119.99621 * 17 15 13 20 20 H 1.48504 * 109.47118 * 239.99906 * 17 15 13 21 21 C 1.39125 * 120.40552 * 179.97438 * 8 7 6 22 22 C 1.39733 * 119.15472 * 0.24834 * 7 6 5 23 23 N 1.31420 * 121.41292 * 359.47145 * 22 7 6 24 24 C 1.32737 * 121.84979 * 0.54298 * 23 22 7 25 25 H 1.08996 * 109.46671 * 270.04228 * 1 2 3 26 26 H 1.08997 * 109.46950 * 30.04129 * 1 2 3 27 27 H 1.08999 * 109.46840 * 150.04339 * 1 2 3 28 28 H 1.08001 * 125.03129 * 359.96393 * 3 2 1 29 29 H 1.08002 * 126.57315 * 180.02562 * 4 3 2 30 30 H 1.08001 * 121.02198 * 0.04191 * 6 5 4 31 31 H 1.08006 * 119.42513 * 0.02562 * 9 8 7 32 32 H 1.07998 * 119.66739 * 179.74892 * 11 10 9 33 33 H 0.97000 * 119.99919 * 179.97438 * 16 15 13 34 34 H 1.08000 * 120.96048 * 359.97438 * 21 8 7 35 35 H 1.07997 * 119.29481 * 179.74769 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2499 1.1218 0.0000 4 6 3.5460 0.7735 0.0006 5 6 3.5923 -0.6902 0.0016 6 6 4.6228 -1.6309 0.0020 7 6 4.2754 -2.9801 0.0025 8 6 5.3276 -4.0270 0.0024 9 6 6.6786 -3.6718 -0.0039 10 7 7.6257 -4.5900 0.0005 11 6 7.3522 -5.8765 0.0014 12 6 6.0186 -6.3271 0.0024 13 6 5.7261 -7.7108 0.0028 14 1 6.4538 -8.4165 0.3754 15 6 4.4936 -8.1656 -0.4796 16 7 3.7595 -7.3886 -1.2339 17 14 3.8968 -9.8817 -0.0465 18 1 4.9044 -10.5542 0.8126 19 1 2.6070 -9.7878 0.6835 20 1 3.7048 -10.6680 -1.2916 21 6 4.9803 -5.3742 0.0034 22 6 2.9240 -3.3351 -0.0028 23 7 1.9765 -2.4244 0.0022 24 6 2.2529 -1.1261 0.0017 25 1 -0.3632 0.0008 1.0276 26 1 -0.3633 0.8896 -0.5145 27 1 -0.3633 -0.8904 -0.5132 28 1 1.8807 2.1367 -0.0006 29 1 4.3926 1.4441 0.0011 30 1 5.6578 -1.3226 0.0023 31 1 6.9526 -2.6271 -0.0084 32 1 8.1590 -6.5945 0.0010 33 1 2.9054 -7.7039 -1.5686 34 1 3.9449 -5.6811 0.0047 35 1 2.6522 -4.3803 -0.0066 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240835464.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:21 Heat of formation + Delta-G solvation = 97.429931 kcal Electronic energy + Delta-G solvation = -20102.102212 eV Core-core repulsion = 17065.165847 eV Total energy + Delta-G solvation = -3036.936365 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.26310 -38.65470 -37.33637 -34.16252 -33.28580 -32.34716 -30.50138 -29.53241 -28.22895 -26.19494 -25.72883 -23.41973 -22.76829 -21.38021 -20.32547 -20.04688 -17.44631 -17.14833 -16.50529 -15.85868 -15.48301 -15.31593 -14.88028 -14.24390 -14.05910 -13.38863 -13.33385 -13.18595 -12.91037 -12.68283 -12.43771 -12.28119 -12.05745 -11.61462 -11.48207 -11.46655 -11.26266 -10.97248 -10.59272 -10.12783 -9.90221 -9.44101 -9.09280 -8.78088 -8.11618 -7.89855 -7.84428 -7.11656 -6.87196 -4.54351 1.29435 1.47762 2.66670 2.70503 2.84203 2.99426 3.01956 3.06343 3.15369 3.82474 4.29936 4.57953 4.61183 4.71348 4.80158 5.14183 5.18488 5.42447 5.45900 5.46485 5.61641 5.62815 5.80290 5.95185 6.02967 6.16808 6.43477 6.56613 6.68497 6.71883 6.82349 6.98328 7.04663 7.18316 7.22011 7.36206 7.62450 7.79036 7.85822 8.32758 8.40122 8.61877 8.64887 9.57527 10.00702 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021551 B = 0.004656 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.948376 B = 6011.821825 C = 7227.524442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.481 5.481 3 C 0.049 3.951 4 C -0.195 4.195 5 C -0.152 4.152 6 C -0.035 4.035 7 C -0.085 4.085 8 C -0.080 4.080 9 C -0.026 4.026 10 N -0.468 5.468 11 C -0.017 4.017 12 C 0.063 3.937 13 C -0.448 4.448 14 H 0.085 0.915 15 C 0.075 3.925 16 N -0.789 5.789 17 Si 0.911 3.089 18 H -0.258 1.258 19 H -0.270 1.270 20 H -0.273 1.273 21 C -0.121 4.121 22 C 0.151 3.849 23 N -0.501 5.501 24 C 0.270 3.730 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.170 0.830 29 H 0.148 0.852 30 H 0.136 0.864 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.284 0.716 34 H 0.133 0.867 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.198 11.532 1.578 13.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.168 5.168 3 C -0.075 4.075 4 C -0.221 4.221 5 C -0.158 4.158 6 C -0.062 4.062 7 C -0.089 4.089 8 C -0.084 4.084 9 C -0.184 4.184 10 N -0.175 5.175 11 C -0.179 4.179 12 C 0.059 3.941 13 C -0.478 4.478 14 H 0.103 0.897 15 C -0.144 4.144 16 N -0.414 5.414 17 Si 0.735 3.265 18 H -0.182 1.182 19 H -0.195 1.195 20 H -0.198 1.198 21 C -0.146 4.146 22 C -0.015 4.015 23 N -0.213 5.213 24 C 0.039 3.961 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.188 0.812 29 H 0.165 0.835 30 H 0.153 0.847 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.095 0.905 34 H 0.150 0.850 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.823 11.646 1.437 14.103 hybrid contribution -0.539 -0.749 0.031 0.923 sum -8.362 10.897 1.469 13.814 Atomic orbital electron populations 1.21885 0.77167 1.03993 1.02762 1.43564 1.05939 1.03373 1.63971 1.21706 0.90376 0.90523 1.04898 1.21611 0.95992 0.92638 1.11889 1.19790 0.93214 0.94460 1.08342 1.21015 0.98506 0.90841 0.95791 1.19651 0.94331 0.93053 1.01907 1.19231 0.92765 0.92670 1.03685 1.21736 0.87924 0.97081 1.11642 1.66942 1.37611 1.02664 1.10317 1.22548 0.95011 0.90966 1.09330 1.18453 0.91786 0.94306 0.89568 1.19601 1.00216 0.92304 1.35689 0.89720 1.25971 0.96022 1.00070 0.92315 1.69785 1.11436 1.37779 1.22384 0.86202 0.79526 0.81372 0.79392 1.18197 1.19516 1.19833 1.21787 1.00382 0.89967 1.02471 1.22759 0.87443 0.97835 0.93440 1.66435 1.38533 0.98713 1.17636 1.18433 0.87833 0.87208 1.02594 0.91636 0.90343 0.89719 0.81233 0.83453 0.84668 0.86119 0.85549 0.90471 0.84984 0.81604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 11.07 59.85 0.66 1.47 16 2 N -0.48 -6.55 3.17 -123.62 -0.39 -6.94 16 3 C 0.05 0.56 11.28 -16.70 -0.19 0.37 16 4 C -0.20 -2.57 11.09 -37.70 -0.42 -2.99 16 5 C -0.15 -2.58 6.38 -105.12 -0.67 -3.26 16 6 C -0.04 -0.64 9.58 -38.70 -0.37 -1.01 16 7 C -0.09 -1.74 5.89 -104.74 -0.62 -2.36 16 8 C -0.08 -1.85 5.88 -104.82 -0.62 -2.46 16 9 C -0.03 -0.60 10.61 -16.97 -0.18 -0.78 16 10 N -0.47 -11.48 10.32 -12.28 -0.13 -11.61 16 11 C -0.02 -0.43 10.96 -16.73 -0.18 -0.62 16 12 C 0.06 1.62 5.59 -106.71 -0.60 1.03 16 13 C -0.45 -11.23 9.08 -37.73 -0.34 -11.58 16 14 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 15 C 0.08 1.77 5.18 -17.34 -0.09 1.68 16 16 N -0.79 -19.19 10.92 55.55 0.61 -18.59 16 17 Si 0.91 17.69 29.59 -169.99 -5.03 12.66 16 18 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 19 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 21 C -0.12 -2.99 8.18 -38.24 -0.31 -3.30 16 22 C 0.15 3.02 10.58 -17.17 -0.18 2.84 16 23 N -0.50 -9.60 10.37 -12.00 -0.12 -9.72 16 24 C 0.27 4.74 7.90 -155.59 -1.23 3.51 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.51 8.13 -51.93 -0.42 0.09 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.14 2.19 6.33 -52.49 -0.33 1.86 16 31 H 0.12 2.43 6.26 -52.48 -0.33 2.10 16 32 H 0.13 2.89 8.06 -52.49 -0.42 2.47 16 33 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 34 H 0.13 3.26 4.45 -52.49 -0.23 3.03 16 35 H 0.17 3.30 6.25 -52.49 -0.33 2.97 16 LS Contribution 303.02 15.07 4.57 4.57 Total: -1.00 -29.59 303.02 -9.14 -38.73 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -3.31 Total: 8.33 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -5.33 Total: -17.44 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.04 Total: -46.86 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.59 -9.14 -38.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240835464.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.164 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds