Wall clock time and date at job start Tue Mar 31 2020 01:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36910 * 124.97773 * 2 1 4 4 C 1.34210 * 109.93597 * 179.97438 * 3 2 1 5 5 C 1.46444 * 106.85262 * 359.97438 * 4 3 2 6 6 C 1.39525 * 134.20332 * 179.97438 * 5 4 3 7 7 C 1.39316 * 117.95599 * 180.02562 * 6 5 4 8 8 C 1.48427 * 120.42171 * 179.97438 * 7 6 5 9 9 C 1.39701 * 120.41072 * 359.72230 * 8 7 6 10 10 N 1.31910 * 121.15300 * 179.76760 * 9 8 7 11 11 C 1.31528 * 122.11528 * 0.49548 * 10 9 8 12 12 C 1.40770 * 120.66703 * 359.77476 * 11 10 9 13 13 C 1.41430 * 120.60487 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00238 * 23.50116 * 13 12 11 15 15 C 1.39943 * 119.99732 * 203.50397 * 13 12 11 16 16 N 1.30830 * 119.99895 * 17.55315 * 15 13 12 17 17 Si 1.86792 * 119.99983 * 197.55670 * 15 13 12 18 18 H 1.48507 * 109.47144 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47370 * 119.99621 * 17 15 13 20 20 H 1.48504 * 109.47118 * 239.99906 * 17 15 13 21 21 C 1.39125 * 120.40552 * 179.97438 * 8 7 6 22 22 C 1.39733 * 119.15472 * 0.24834 * 7 6 5 23 23 N 1.31420 * 121.41292 * 359.47145 * 22 7 6 24 24 C 1.32737 * 121.84979 * 0.54298 * 23 22 7 25 25 H 1.08996 * 109.46671 * 270.04228 * 1 2 3 26 26 H 1.08997 * 109.46950 * 30.04129 * 1 2 3 27 27 H 1.08999 * 109.46840 * 150.04339 * 1 2 3 28 28 H 1.08001 * 125.03129 * 359.96393 * 3 2 1 29 29 H 1.08002 * 126.57315 * 180.02562 * 4 3 2 30 30 H 1.08001 * 121.02198 * 0.04191 * 6 5 4 31 31 H 1.08006 * 119.42513 * 0.02562 * 9 8 7 32 32 H 1.07998 * 119.66739 * 179.74892 * 11 10 9 33 33 H 0.97000 * 119.99919 * 179.97438 * 16 15 13 34 34 H 1.08000 * 120.96048 * 359.97438 * 21 8 7 35 35 H 1.07997 * 119.29481 * 179.74769 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2499 1.1218 0.0000 4 6 3.5460 0.7735 0.0006 5 6 3.5923 -0.6902 0.0016 6 6 4.6228 -1.6309 0.0020 7 6 4.2754 -2.9801 0.0025 8 6 5.3276 -4.0270 0.0024 9 6 6.6786 -3.6718 -0.0039 10 7 7.6257 -4.5900 0.0005 11 6 7.3522 -5.8765 0.0014 12 6 6.0186 -6.3271 0.0024 13 6 5.7261 -7.7108 0.0028 14 1 6.4538 -8.4165 0.3754 15 6 4.4936 -8.1656 -0.4796 16 7 3.7595 -7.3886 -1.2339 17 14 3.8968 -9.8817 -0.0465 18 1 4.9044 -10.5542 0.8126 19 1 2.6070 -9.7878 0.6835 20 1 3.7048 -10.6680 -1.2916 21 6 4.9803 -5.3742 0.0034 22 6 2.9240 -3.3351 -0.0028 23 7 1.9765 -2.4244 0.0022 24 6 2.2529 -1.1261 0.0017 25 1 -0.3632 0.0008 1.0276 26 1 -0.3633 0.8896 -0.5145 27 1 -0.3633 -0.8904 -0.5132 28 1 1.8807 2.1367 -0.0006 29 1 4.3926 1.4441 0.0011 30 1 5.6578 -1.3226 0.0023 31 1 6.9526 -2.6271 -0.0084 32 1 8.1590 -6.5945 0.0010 33 1 2.9054 -7.7039 -1.5686 34 1 3.9449 -5.6811 0.0047 35 1 2.6522 -4.3803 -0.0066 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240835464.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:20 Heat of formation + Delta-G solvation = 81.819556 kcal Electronic energy + Delta-G solvation = -20102.779128 eV Core-core repulsion = 17065.165847 eV Total energy + Delta-G solvation = -3037.613282 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.46766 -40.36086 -38.76511 -35.99098 -34.62257 -33.71929 -32.31741 -30.89145 -29.64246 -27.57306 -27.25242 -24.87646 -24.28520 -23.06360 -21.91361 -21.18724 -19.19733 -18.41058 -17.84214 -17.56923 -16.87484 -16.55845 -16.51560 -15.91869 -15.54096 -14.72861 -14.62341 -14.39778 -14.20472 -14.09933 -14.03081 -13.54823 -13.26265 -13.20621 -13.09331 -13.04667 -12.66160 -12.59746 -12.17669 -11.68011 -11.55070 -11.21655 -10.57195 -10.30533 -9.93982 -9.72493 -9.03408 -8.75367 -8.56202 -6.45690 -0.13253 0.06078 0.92093 1.23584 1.40409 1.52209 1.56077 1.66147 1.79471 2.18871 2.66468 2.96968 3.34851 3.64987 3.74435 3.86469 3.93151 4.03448 4.18318 4.27707 4.41429 4.44952 4.59838 4.64985 4.72422 4.77773 4.87656 4.95962 5.03481 5.17881 5.21831 5.42438 5.49504 5.56857 5.81319 5.90554 5.99718 6.09124 6.25443 6.47951 6.74988 6.76685 6.98783 7.68192 8.23502 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021551 B = 0.004656 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.948376 B = 6011.821825 C = 7227.524442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.481 5.481 3 C 0.078 3.922 4 C -0.212 4.212 5 C -0.165 4.165 6 C -0.031 4.031 7 C -0.113 4.113 8 C -0.073 4.073 9 C -0.035 4.035 10 N -0.477 5.477 11 C -0.040 4.040 12 C 0.040 3.960 13 C -0.478 4.478 14 H 0.088 0.912 15 C 0.038 3.962 16 N -0.817 5.817 17 Si 0.985 3.015 18 H -0.255 1.255 19 H -0.264 1.264 20 H -0.265 1.265 21 C -0.144 4.144 22 C 0.134 3.866 23 N -0.512 5.512 24 C 0.246 3.754 25 H 0.077 0.923 26 H 0.120 0.880 27 H 0.068 0.932 28 H 0.227 0.773 29 H 0.176 0.824 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.137 0.863 33 H 0.293 0.707 34 H 0.125 0.875 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.655 14.241 1.730 16.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.168 5.168 3 C -0.046 4.046 4 C -0.237 4.237 5 C -0.172 4.172 6 C -0.057 4.057 7 C -0.117 4.117 8 C -0.076 4.076 9 C -0.193 4.193 10 N -0.184 5.184 11 C -0.201 4.201 12 C 0.036 3.964 13 C -0.507 4.507 14 H 0.106 0.894 15 C -0.179 4.179 16 N -0.442 5.442 17 Si 0.806 3.194 18 H -0.178 1.178 19 H -0.189 1.189 20 H -0.190 1.190 21 C -0.170 4.170 22 C -0.031 4.031 23 N -0.225 5.225 24 C 0.014 3.986 25 H 0.096 0.904 26 H 0.138 0.862 27 H 0.087 0.913 28 H 0.244 0.756 29 H 0.194 0.806 30 H 0.170 0.830 31 H 0.168 0.832 32 H 0.154 0.846 33 H 0.103 0.897 34 H 0.142 0.858 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.283 14.375 1.587 17.185 hybrid contribution -0.230 -1.287 -0.036 1.308 sum -9.513 13.088 1.550 16.254 Atomic orbital electron populations 1.22181 0.74836 1.05346 1.04013 1.44027 1.07544 1.02614 1.62626 1.22660 0.89495 0.91836 1.00634 1.22004 0.98102 0.90553 1.13034 1.20245 0.92638 0.96707 1.07599 1.21194 0.99812 0.90076 0.94621 1.19510 0.93688 0.93555 1.04978 1.19454 0.93715 0.92761 1.01666 1.22219 0.87785 0.98180 1.11106 1.66960 1.38194 1.02721 1.10535 1.22721 0.95152 0.91528 1.10662 1.18779 0.92429 0.95147 0.90069 1.19877 1.01585 0.92340 1.36943 0.89422 1.26821 0.95459 1.04106 0.91491 1.69835 1.11918 1.39706 1.22692 0.85100 0.78928 0.76163 0.79258 1.17806 1.18894 1.19003 1.21826 0.99974 0.90981 1.04227 1.22502 0.87773 0.97651 0.95219 1.66369 1.38292 0.99800 1.18017 1.18875 0.89456 0.87501 1.02807 0.90432 0.86155 0.91278 0.75635 0.80616 0.83033 0.83223 0.84594 0.89657 0.85757 0.83093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 11.07 127.77 1.41 2.62 16 2 N -0.48 -11.45 3.17 -545.02 -1.73 -13.18 16 3 C 0.08 1.36 11.28 82.98 0.94 2.29 16 4 C -0.21 -4.73 11.09 23.49 0.26 -4.47 16 5 C -0.16 -5.35 6.38 -20.19 -0.13 -5.48 16 6 C -0.03 -1.12 9.58 22.84 0.22 -0.90 16 7 C -0.11 -4.76 5.89 -19.94 -0.12 -4.88 16 8 C -0.07 -3.50 5.88 -20.00 -0.12 -3.61 16 9 C -0.03 -1.63 10.61 85.03 0.90 -0.73 16 10 N -0.48 -23.96 10.32 -192.78 -1.99 -25.94 16 11 C -0.04 -2.08 10.96 85.36 0.94 -1.14 16 12 C 0.04 2.16 5.59 -21.22 -0.12 2.04 16 13 C -0.48 -24.96 9.08 23.47 0.21 -24.74 16 14 H 0.09 4.35 7.90 -2.91 -0.02 4.32 16 15 C 0.04 1.83 5.18 85.26 0.44 2.27 16 16 N -0.82 -41.21 10.92 21.83 0.24 -40.98 16 17 Si 0.99 36.73 29.59 68.60 2.03 38.76 16 18 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 19 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 20 H -0.27 -9.50 7.11 99.48 0.71 -8.80 16 21 C -0.14 -7.57 8.18 23.14 0.19 -7.38 16 22 C 0.13 5.65 10.58 85.12 0.90 6.55 16 23 N -0.51 -20.03 10.37 -191.88 -1.99 -22.02 16 24 C 0.25 8.35 7.90 133.92 1.06 9.41 16 25 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 26 H 0.12 0.92 8.13 -2.39 -0.02 0.90 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.23 1.33 8.06 -2.91 -0.02 1.31 16 29 H 0.18 2.84 8.06 -2.91 -0.02 2.81 16 30 H 0.15 4.73 6.33 -2.91 -0.02 4.71 16 31 H 0.15 5.93 6.26 -2.91 -0.02 5.91 16 32 H 0.14 6.51 8.06 -2.91 -0.02 6.49 16 33 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 34 H 0.12 6.60 4.45 -2.91 -0.01 6.59 16 35 H 0.15 6.59 6.25 -2.91 -0.02 6.57 16 Total: -1.00 -67.85 303.02 4.68 -63.17 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 1.13 Total: 28.34 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 6.99 Total: -28.15 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -5.47 Total: -102.12 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.76 kcal Total: -67.85 4.68 -63.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240835464.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.995 kcal (2) G-P(sol) polarization free energy of solvation -67.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds