Wall clock time and date at job start Tue Mar 31 2020 01:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36919 * 124.97198 * 2 1 4 4 C 1.34205 * 109.93687 * 180.02562 * 3 2 1 5 5 C 1.46457 * 106.84629 * 0.02562 * 4 3 2 6 6 C 1.39495 * 134.20567 * 180.02562 * 5 4 3 7 7 C 1.39348 * 117.95959 * 179.97438 * 6 5 4 8 8 C 1.48365 * 120.42854 * 180.02562 * 7 6 5 9 9 C 1.40050 * 120.81843 * 0.02562 * 8 7 6 10 10 C 1.38487 * 119.41856 * 179.97438 * 9 8 7 11 11 N 1.31493 * 121.15222 * 359.97438 * 10 9 8 12 12 C 1.33658 * 121.79017 * 0.02562 * 11 10 9 13 13 C 1.41428 * 119.77539 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99968 * 179.97438 * 13 12 11 15 15 C 1.40026 * 120.00139 * 0.02562 * 13 12 11 16 16 N 1.30744 * 120.00089 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00125 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47306 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47377 * 119.99680 * 17 15 13 20 20 H 1.48503 * 109.47574 * 239.99804 * 17 15 13 21 21 C 1.39321 * 120.82146 * 179.72149 * 8 7 6 22 22 C 1.39766 * 119.14540 * 0.02562 * 7 6 5 23 23 N 1.31407 * 121.41035 * 359.97438 * 22 7 6 24 24 C 1.32742 * 121.85704 * 359.70740 * 23 22 7 25 25 H 1.09002 * 109.47391 * 90.01924 * 1 2 3 26 26 H 1.09001 * 109.46813 * 330.01981 * 1 2 3 27 27 H 1.09004 * 109.47041 * 210.02108 * 1 2 3 28 28 H 1.07997 * 125.03175 * 0.02992 * 3 2 1 29 29 H 1.07999 * 126.57945 * 180.02562 * 4 3 2 30 30 H 1.08001 * 121.01461 * 359.95668 * 6 5 4 31 31 H 1.07998 * 120.29288 * 359.97438 * 9 8 7 32 32 H 1.08005 * 119.42636 * 179.97438 * 10 9 8 33 33 H 0.96998 * 119.99960 * 180.02562 * 16 15 13 34 34 H 1.08001 * 120.58381 * 0.02562 * 21 8 7 35 35 H 1.07998 * 119.29426 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2498 1.1220 0.0000 4 6 3.5459 0.7738 -0.0006 5 6 3.5922 -0.6900 -0.0016 6 6 4.6224 -1.6305 -0.0020 7 6 4.2750 -2.9800 -0.0025 8 6 5.3266 -4.0266 -0.0024 9 6 6.6836 -3.6803 -0.0014 10 6 7.6410 -4.6809 -0.0008 11 7 7.2982 -5.9503 -0.0007 12 6 6.0179 -6.3340 -0.0017 13 6 5.6974 -7.7115 -0.0022 14 1 4.6641 -8.0255 -0.0025 15 6 6.7199 -8.6682 -0.0010 16 7 7.9708 -8.2881 0.0000 17 14 6.2966 -10.4875 -0.0009 18 1 4.8207 -10.6525 -0.0015 19 1 6.8672 -11.1287 -1.2127 20 1 6.8652 -11.1281 1.2123 21 6 4.9886 -5.3782 0.0029 22 6 2.9232 -3.3349 -0.0030 23 7 1.9760 -2.4241 -0.0026 24 6 2.2524 -1.1258 0.0041 25 1 -0.3634 -0.0003 -1.0277 26 1 -0.3633 0.8902 0.5135 27 1 -0.3633 -0.8898 0.5142 28 1 1.8805 2.1368 0.0005 29 1 4.3924 1.4444 -0.0003 30 1 5.6574 -1.3222 -0.0023 31 1 6.9808 -2.6420 -0.0010 32 1 8.6875 -4.4139 -0.0004 33 1 8.6791 -8.9508 0.0004 34 1 3.9533 -5.6857 0.0067 35 1 2.6512 -4.3801 -0.0038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240845394.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:27 Heat of formation + Delta-G solvation = 109.320183 kcal Electronic energy + Delta-G solvation = -19825.911488 eV Core-core repulsion = 16789.490723 eV Total energy + Delta-G solvation = -3036.420765 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -41.35450 -38.56072 -37.35121 -33.84686 -33.26054 -32.29067 -30.22793 -29.56339 -28.46215 -26.36521 -25.73388 -23.40522 -22.89837 -21.15576 -20.41945 -20.16410 -17.48915 -17.28219 -16.42462 -15.88656 -15.56680 -15.10609 -14.60659 -14.19508 -13.80766 -13.44734 -13.40535 -13.15779 -12.95660 -12.84933 -12.39002 -12.28815 -12.27529 -11.62610 -11.60083 -11.21994 -11.09683 -10.71819 -10.47657 -10.24460 -9.87976 -9.40364 -9.06645 -8.79789 -7.96774 -7.67141 -7.58066 -7.28691 -6.41044 -4.53816 1.21232 1.40220 2.62032 2.74503 2.76060 3.08310 3.09813 3.14038 3.21454 3.94598 4.29404 4.48179 4.63811 4.72764 4.78269 5.07320 5.10335 5.34512 5.36185 5.37850 5.52068 5.77810 5.87096 5.91473 5.99812 6.11463 6.40815 6.50654 6.59706 6.69194 6.75540 6.91234 7.12722 7.13040 7.24205 7.31764 7.51512 7.68923 7.96934 8.21939 8.26060 8.64376 8.90174 10.10358 10.31098 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034814 B = 0.003650 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.086680 B = 7669.818506 C = 8458.758742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.480 5.480 3 C 0.050 3.950 4 C -0.195 4.195 5 C -0.153 4.153 6 C -0.027 4.027 7 C -0.095 4.095 8 C 0.010 3.990 9 C -0.306 4.306 10 C 0.126 3.874 11 N -0.483 5.483 12 C 0.256 3.744 13 C -0.431 4.431 14 H 0.085 0.915 15 C 0.069 3.931 16 N -0.715 5.715 17 Si 0.907 3.093 18 H -0.260 1.260 19 H -0.273 1.273 20 H -0.273 1.273 21 C -0.256 4.256 22 C 0.150 3.850 23 N -0.502 5.502 24 C 0.272 3.728 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.171 0.829 29 H 0.148 0.852 30 H 0.137 0.863 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.272 0.728 34 H 0.103 0.897 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.319 13.724 0.083 16.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.168 5.168 3 C -0.074 4.074 4 C -0.220 4.220 5 C -0.160 4.160 6 C -0.054 4.054 7 C -0.099 4.099 8 C 0.003 3.997 9 C -0.329 4.329 10 C -0.039 4.039 11 N -0.196 5.196 12 C 0.131 3.869 13 C -0.462 4.462 14 H 0.103 0.897 15 C -0.157 4.157 16 N -0.336 5.336 17 Si 0.731 3.269 18 H -0.184 1.184 19 H -0.198 1.198 20 H -0.198 1.198 21 C -0.279 4.279 22 C -0.016 4.016 23 N -0.214 5.214 24 C 0.041 3.959 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.189 0.811 29 H 0.166 0.834 30 H 0.154 0.846 31 H 0.115 0.885 32 H 0.137 0.863 33 H 0.083 0.917 34 H 0.121 0.879 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.742 12.799 0.079 16.085 hybrid contribution 0.012 0.241 -0.012 0.242 sum -9.730 13.040 0.067 16.271 Atomic orbital electron populations 1.21898 0.77071 1.04026 1.02847 1.43569 1.06001 1.03353 1.63855 1.21726 0.90353 0.90556 1.04761 1.21628 0.96046 0.92610 1.11755 1.19824 0.93222 0.94539 1.08388 1.21063 0.98611 0.90846 0.94849 1.19740 0.94387 0.93252 1.02507 1.18362 0.91509 0.91486 0.98296 1.21305 0.92810 0.98553 1.20238 1.22448 0.97718 0.89701 0.94055 1.68731 1.19006 1.15083 1.16800 1.18542 0.86706 0.93286 0.88346 1.19669 0.94245 0.89422 1.42909 0.89711 1.26071 0.94709 1.01292 0.93588 1.70145 0.99787 1.35085 1.28616 0.86285 0.80067 0.82005 0.78556 1.18355 1.19832 1.19837 1.21822 0.99090 0.92009 1.15003 1.22701 0.87427 0.97749 0.93728 1.66417 1.38478 0.98755 1.17747 1.18429 0.87859 0.87191 1.02375 0.91551 0.90286 0.89706 0.81136 0.83388 0.84575 0.88548 0.86286 0.91658 0.87877 0.81759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 11.07 59.85 0.66 1.40 16 2 N -0.48 -6.15 3.17 -123.62 -0.39 -6.54 16 3 C 0.05 0.54 11.28 -16.70 -0.19 0.35 16 4 C -0.19 -2.44 11.09 -37.69 -0.42 -2.86 16 5 C -0.15 -2.50 6.38 -105.12 -0.67 -3.17 16 6 C -0.03 -0.48 9.60 -38.70 -0.37 -0.85 16 7 C -0.10 -1.85 5.89 -104.74 -0.62 -2.47 16 8 C 0.01 0.23 5.91 -104.65 -0.62 -0.39 16 9 C -0.31 -6.76 9.52 -38.81 -0.37 -7.13 16 10 C 0.13 3.03 11.17 -17.60 -0.20 2.83 16 11 N -0.48 -13.26 7.85 -11.21 -0.09 -13.35 16 12 C 0.26 6.92 6.55 -85.02 -0.56 6.36 16 13 C -0.43 -11.42 9.14 -37.70 -0.34 -11.76 16 14 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 15 C 0.07 1.74 5.50 -17.34 -0.10 1.64 16 16 N -0.72 -18.98 11.46 55.55 0.64 -18.34 16 17 Si 0.91 18.46 29.56 -169.99 -5.02 13.44 16 18 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 C -0.26 -6.16 9.23 -38.34 -0.35 -6.52 16 22 C 0.15 2.76 10.59 -17.16 -0.18 2.58 16 23 N -0.50 -8.98 10.37 -12.00 -0.12 -9.10 16 24 C 0.27 4.53 7.90 -155.61 -1.23 3.31 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.46 8.13 -51.93 -0.42 0.04 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.14 2.16 6.40 -52.49 -0.34 1.83 16 31 H 0.10 1.85 6.38 -52.49 -0.34 1.51 16 32 H 0.12 2.53 8.06 -52.48 -0.42 2.10 16 33 H 0.27 6.52 8.29 -40.82 -0.34 6.18 16 34 H 0.10 2.25 6.34 -52.49 -0.33 1.91 16 35 H 0.17 2.82 6.28 -52.49 -0.33 2.49 16 LS Contribution 304.66 15.07 4.59 4.59 Total: -1.00 -31.64 304.66 -9.36 -41.00 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -3.41 Total: 4.98 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -5.55 Total: -16.67 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.03 Total: -47.34 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.44 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.64 -9.36 -41.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240845394.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.321 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds