Wall clock time and date at job start Tue Mar 31 2020 01:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36919 * 124.97198 * 2 1 4 4 C 1.34205 * 109.93687 * 180.02562 * 3 2 1 5 5 C 1.46457 * 106.84629 * 0.02562 * 4 3 2 6 6 C 1.39495 * 134.20567 * 180.02562 * 5 4 3 7 7 C 1.39348 * 117.95959 * 179.97438 * 6 5 4 8 8 C 1.48365 * 120.42854 * 180.02562 * 7 6 5 9 9 C 1.40050 * 120.81843 * 0.02562 * 8 7 6 10 10 C 1.38487 * 119.41856 * 179.97438 * 9 8 7 11 11 N 1.31493 * 121.15222 * 359.97438 * 10 9 8 12 12 C 1.33658 * 121.79017 * 0.02562 * 11 10 9 13 13 C 1.41428 * 119.77539 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99968 * 179.97438 * 13 12 11 15 15 C 1.40026 * 120.00139 * 0.02562 * 13 12 11 16 16 N 1.30744 * 120.00089 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00125 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47306 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47377 * 119.99680 * 17 15 13 20 20 H 1.48503 * 109.47574 * 239.99804 * 17 15 13 21 21 C 1.39321 * 120.82146 * 179.72149 * 8 7 6 22 22 C 1.39766 * 119.14540 * 0.02562 * 7 6 5 23 23 N 1.31407 * 121.41035 * 359.97438 * 22 7 6 24 24 C 1.32742 * 121.85704 * 359.70740 * 23 22 7 25 25 H 1.09002 * 109.47391 * 90.01924 * 1 2 3 26 26 H 1.09001 * 109.46813 * 330.01981 * 1 2 3 27 27 H 1.09004 * 109.47041 * 210.02108 * 1 2 3 28 28 H 1.07997 * 125.03175 * 0.02992 * 3 2 1 29 29 H 1.07999 * 126.57945 * 180.02562 * 4 3 2 30 30 H 1.08001 * 121.01461 * 359.95668 * 6 5 4 31 31 H 1.07998 * 120.29288 * 359.97438 * 9 8 7 32 32 H 1.08005 * 119.42636 * 179.97438 * 10 9 8 33 33 H 0.96998 * 119.99960 * 180.02562 * 16 15 13 34 34 H 1.08001 * 120.58381 * 0.02562 * 21 8 7 35 35 H 1.07998 * 119.29426 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2498 1.1220 0.0000 4 6 3.5459 0.7738 -0.0006 5 6 3.5922 -0.6900 -0.0016 6 6 4.6224 -1.6305 -0.0020 7 6 4.2750 -2.9800 -0.0025 8 6 5.3266 -4.0266 -0.0024 9 6 6.6836 -3.6803 -0.0014 10 6 7.6410 -4.6809 -0.0008 11 7 7.2982 -5.9503 -0.0007 12 6 6.0179 -6.3340 -0.0017 13 6 5.6974 -7.7115 -0.0022 14 1 4.6641 -8.0255 -0.0025 15 6 6.7199 -8.6682 -0.0010 16 7 7.9708 -8.2881 0.0000 17 14 6.2966 -10.4875 -0.0009 18 1 4.8207 -10.6525 -0.0015 19 1 6.8672 -11.1287 -1.2127 20 1 6.8652 -11.1281 1.2123 21 6 4.9886 -5.3782 0.0029 22 6 2.9232 -3.3349 -0.0030 23 7 1.9760 -2.4241 -0.0026 24 6 2.2524 -1.1258 0.0041 25 1 -0.3634 -0.0003 -1.0277 26 1 -0.3633 0.8902 0.5135 27 1 -0.3633 -0.8898 0.5142 28 1 1.8805 2.1368 0.0005 29 1 4.3924 1.4444 -0.0003 30 1 5.6574 -1.3222 -0.0023 31 1 6.9808 -2.6420 -0.0010 32 1 8.6875 -4.4139 -0.0004 33 1 8.6791 -8.9508 0.0004 34 1 3.9533 -5.6857 0.0067 35 1 2.6512 -4.3801 -0.0038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240845394.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:26 Heat of formation + Delta-G solvation = 91.989564 kcal Electronic energy + Delta-G solvation = -19826.663000 eV Core-core repulsion = 16789.490723 eV Total energy + Delta-G solvation = -3037.172277 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.48255 -40.21826 -38.77130 -35.62155 -34.55433 -33.70252 -31.99546 -30.95211 -29.81612 -27.70647 -27.24441 -24.75114 -24.38434 -22.82614 -22.03872 -21.23157 -19.23431 -18.39377 -17.70241 -17.54234 -16.70675 -16.56861 -16.10606 -15.78431 -15.56534 -14.66445 -14.56508 -14.38092 -14.35760 -14.04696 -14.01316 -13.79392 -13.20015 -13.11917 -12.90904 -12.77730 -12.61460 -12.52865 -12.15943 -11.65437 -11.64817 -11.15328 -10.41323 -10.31089 -9.57904 -9.48757 -9.08204 -8.70817 -8.27963 -6.50754 -0.10171 0.05720 0.91319 1.39809 1.42087 1.57306 1.57616 1.64937 1.77809 2.24438 2.79527 3.01558 3.33624 3.64068 3.84496 3.91222 3.98195 4.02039 4.23916 4.26369 4.41630 4.45209 4.57690 4.68660 4.73833 4.79061 4.89796 4.95348 5.01853 5.16731 5.30300 5.47417 5.47865 5.53602 5.67668 5.91264 6.05163 6.14623 6.23978 6.30011 6.74241 6.96513 6.96924 8.20608 8.47205 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034814 B = 0.003650 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.086680 B = 7669.818506 C = 8458.758742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.480 5.480 3 C 0.078 3.922 4 C -0.213 4.213 5 C -0.169 4.169 6 C -0.025 4.025 7 C -0.123 4.123 8 C 0.016 3.984 9 C -0.300 4.300 10 C 0.107 3.893 11 N -0.522 5.522 12 C 0.226 3.774 13 C -0.469 4.469 14 H 0.089 0.911 15 C 0.023 3.977 16 N -0.757 5.757 17 Si 0.988 3.012 18 H -0.254 1.254 19 H -0.266 1.266 20 H -0.266 1.266 21 C -0.277 4.277 22 C 0.137 3.863 23 N -0.511 5.511 24 C 0.249 3.751 25 H 0.077 0.923 26 H 0.119 0.881 27 H 0.071 0.929 28 H 0.227 0.773 29 H 0.175 0.825 30 H 0.149 0.851 31 H 0.129 0.871 32 H 0.141 0.859 33 H 0.279 0.721 34 H 0.113 0.887 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.929 16.627 0.095 19.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.167 5.167 3 C -0.047 4.047 4 C -0.237 4.237 5 C -0.176 4.176 6 C -0.052 4.052 7 C -0.127 4.127 8 C 0.009 3.991 9 C -0.322 4.322 10 C -0.057 4.057 11 N -0.236 5.236 12 C 0.101 3.899 13 C -0.501 4.501 14 H 0.107 0.893 15 C -0.198 4.198 16 N -0.379 5.379 17 Si 0.808 3.192 18 H -0.177 1.177 19 H -0.191 1.191 20 H -0.191 1.191 21 C -0.300 4.300 22 C -0.029 4.029 23 N -0.224 5.224 24 C 0.017 3.983 25 H 0.096 0.904 26 H 0.138 0.862 27 H 0.090 0.910 28 H 0.243 0.757 29 H 0.192 0.808 30 H 0.167 0.833 31 H 0.147 0.853 32 H 0.159 0.841 33 H 0.089 0.911 34 H 0.131 0.869 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.371 15.744 0.091 19.422 hybrid contribution 0.367 -0.272 -0.018 0.457 sum -11.004 15.472 0.074 18.986 Atomic orbital electron populations 1.22196 0.74724 1.05443 1.04059 1.44030 1.07601 1.02620 1.62435 1.22652 0.89484 0.91879 1.00655 1.22009 0.98106 0.90662 1.12959 1.20253 0.92752 0.96677 1.07910 1.21218 0.99749 0.90281 0.93905 1.19573 0.93918 0.93456 1.05778 1.18660 0.92593 0.91649 0.96148 1.21641 0.92463 0.99776 1.18366 1.22908 0.99333 0.89391 0.94022 1.68669 1.19598 1.16863 1.18475 1.18966 0.87458 0.94404 0.89074 1.20025 0.95038 0.90164 1.44853 0.89250 1.26999 0.94219 1.06084 0.92482 1.70242 1.00916 1.36986 1.29775 0.85085 0.79961 0.75414 0.78778 1.17713 1.19093 1.19103 1.21958 0.99151 0.92740 1.16121 1.22642 0.87423 0.98093 0.94730 1.66400 1.38226 0.99670 1.18087 1.18878 0.89329 0.87602 1.02518 0.90423 0.86234 0.91025 0.75699 0.80769 0.83322 0.85320 0.84134 0.91077 0.86872 0.81935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 11.07 127.77 1.41 2.48 16 2 N -0.48 -10.55 3.17 -545.02 -1.73 -12.28 16 3 C 0.08 1.25 11.28 82.98 0.94 2.18 16 4 C -0.21 -4.48 11.09 23.49 0.26 -4.22 16 5 C -0.17 -5.19 6.38 -20.19 -0.13 -5.32 16 6 C -0.03 -0.87 9.60 22.84 0.22 -0.65 16 7 C -0.12 -4.87 5.89 -19.94 -0.12 -4.99 16 8 C 0.02 0.75 5.91 -19.88 -0.12 0.64 16 9 C -0.30 -13.33 9.52 22.77 0.22 -13.11 16 10 C 0.11 5.28 11.17 84.80 0.95 6.23 16 11 N -0.52 -29.96 7.85 -189.36 -1.49 -31.45 16 12 C 0.23 12.86 6.55 40.19 0.26 13.12 16 13 C -0.47 -26.08 9.14 23.49 0.21 -25.87 16 14 H 0.09 4.63 7.85 -2.91 -0.02 4.61 16 15 C 0.02 1.23 5.50 85.29 0.47 1.69 16 16 N -0.76 -41.77 11.46 21.84 0.25 -41.52 16 17 Si 0.99 38.88 29.56 68.60 2.03 40.91 16 18 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 19 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 20 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 21 C -0.28 -14.01 9.23 23.07 0.21 -13.80 16 22 C 0.14 5.20 10.59 85.13 0.90 6.10 16 23 N -0.51 -18.29 10.37 -191.87 -1.99 -20.28 16 24 C 0.25 7.89 7.90 133.94 1.06 8.95 16 25 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.12 0.73 8.13 -2.39 -0.02 0.71 16 27 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.23 1.09 8.06 -2.91 -0.02 1.06 16 29 H 0.17 2.66 8.06 -2.91 -0.02 2.63 16 30 H 0.15 4.49 6.40 -2.91 -0.02 4.47 16 31 H 0.13 4.76 6.38 -2.91 -0.02 4.74 16 32 H 0.14 6.05 8.06 -2.91 -0.02 6.03 16 33 H 0.28 13.82 8.29 -92.71 -0.77 13.05 16 34 H 0.11 5.26 6.34 -2.91 -0.02 5.24 16 35 H 0.16 5.94 6.28 -2.91 -0.02 5.92 16 Total: -1.00 -73.15 304.66 4.95 -68.20 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 1.13 Total: 22.98 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: 6.75 Total: -26.57 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -4.95 Total: -105.52 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -73.15 4.95 -68.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240845394.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.193 kcal (2) G-P(sol) polarization free energy of solvation -73.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds