Wall clock time and date at job start Tue Mar 31 2020 00:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34196 * 126.58275 * 2 1 4 4 N 1.36930 * 109.94950 * 179.97438 * 3 2 1 5 5 H 0.96996 * 124.96312 * 180.02562 * 4 3 2 6 6 C 1.37331 * 110.07640 * 359.97438 * 4 3 2 7 7 N 1.32810 * 132.96678 * 179.97438 * 6 4 3 8 8 C 1.31327 * 121.89509 * 180.02562 * 7 6 4 9 9 C 1.40053 * 121.37332 * 359.97438 * 8 7 6 10 10 C 1.47928 * 120.45785 * 179.97438 * 9 8 7 11 11 C 1.40288 * 120.34654 * 359.97438 * 10 9 8 12 12 C 1.36663 * 118.60469 * 179.75268 * 11 10 9 13 13 C 1.40888 * 119.25807 * 0.25535 * 12 11 10 14 14 C 1.40962 * 119.68069 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99815 * 359.97438 * 14 13 12 16 16 C 1.40078 * 120.00350 * 180.02562 * 14 13 12 17 17 N 1.30726 * 119.99566 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00357 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46877 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46924 * 119.99534 * 18 16 14 21 21 H 1.48498 * 109.47565 * 240.00008 * 18 16 14 22 22 N 1.33795 * 120.64154 * 359.97438 * 13 12 11 23 23 C 1.31183 * 121.50294 * 0.02562 * 22 13 12 24 24 C 1.39669 * 119.08771 * 0.26243 * 9 8 7 25 25 C 1.39407 * 117.93592 * 359.51991 * 24 9 8 26 26 H 1.09004 * 109.47248 * 270.02499 * 1 2 3 27 27 H 1.08994 * 109.47352 * 30.02817 * 1 2 3 28 28 H 1.09005 * 109.47043 * 150.03080 * 1 2 3 29 29 H 1.08004 * 125.02596 * 359.95351 * 3 2 1 30 30 H 1.07992 * 119.31590 * 179.97438 * 8 7 6 31 31 H 1.08002 * 120.69972 * 0.03417 * 11 10 9 32 32 H 1.08005 * 120.36866 * 180.23278 * 12 11 10 33 33 H 0.97005 * 119.99786 * 179.97438 * 17 16 14 34 34 H 1.08001 * 119.65487 * 179.97438 * 23 22 13 35 35 H 1.07999 * 121.03416 * 179.72912 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3067 1.0776 0.0000 4 7 3.6187 0.6856 0.0006 5 1 4.3788 1.2882 0.0010 6 6 3.7012 -0.6852 0.0015 7 7 4.7257 -1.5304 0.0019 8 6 4.5513 -2.8320 0.0024 9 6 3.2693 -3.3960 0.0031 10 6 3.0964 -4.8651 0.0030 11 6 4.2159 -5.7106 0.0018 12 6 4.0150 -7.0623 0.0070 13 6 2.6980 -7.5627 0.0079 14 6 2.4805 -8.9554 0.0138 15 1 3.3212 -9.6333 0.0171 16 6 1.1738 -9.4603 0.0142 17 7 0.1561 -8.6398 0.0096 18 14 0.8856 -11.3059 0.0212 19 1 2.1926 -12.0110 0.0263 20 1 0.1161 -11.6820 1.2344 21 1 0.1191 -11.6919 -1.1906 22 7 1.6517 -6.7288 0.0043 23 6 1.8127 -5.4269 -0.0007 24 6 2.1564 -2.5522 -0.0024 25 6 2.3800 -1.1762 0.0021 26 1 -0.3634 0.0004 1.0277 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3633 -0.8903 -0.5134 29 1 1.9660 2.1025 -0.0007 30 1 5.4144 -3.4811 0.0023 31 1 5.2156 -5.3018 0.0014 32 1 4.8565 -7.7394 0.0100 33 1 -0.7487 -8.9894 0.0095 34 1 0.9469 -4.7814 -0.0040 35 1 1.1536 -2.9532 -0.0064 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240957106.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:17 Heat of formation + Delta-G solvation = 93.786503 kcal Electronic energy + Delta-G solvation = -19843.142805 eV Core-core repulsion = 16806.048449 eV Total energy + Delta-G solvation = -3037.094356 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.13436 -38.52696 -37.18458 -34.01632 -33.16222 -31.66765 -30.88728 -29.93511 -28.41587 -26.49694 -25.45918 -23.68316 -22.46413 -21.42766 -20.49744 -19.04848 -17.87952 -17.69957 -16.33852 -15.76809 -15.53767 -14.80897 -14.65300 -14.20134 -13.89628 -13.20425 -13.08142 -13.00317 -12.64865 -12.46192 -12.45234 -12.40620 -12.03724 -11.75320 -11.49945 -11.30447 -11.08550 -10.86206 -10.48516 -10.04686 -10.00624 -9.49687 -9.02841 -8.63015 -8.22756 -7.73952 -7.67001 -7.07743 -6.58452 -4.62406 1.37490 1.59350 2.74321 2.86713 2.99991 3.00966 3.04310 3.06471 3.16944 3.80648 4.35498 4.71917 4.80212 4.89962 5.08971 5.32583 5.46380 5.57875 5.78507 5.81242 5.82084 5.85909 5.92258 5.99120 6.13196 6.23578 6.37564 6.54823 6.67644 6.82831 6.84956 6.90549 6.93781 7.24753 7.33860 7.51052 7.54142 7.68949 7.88865 8.05587 8.43692 8.46333 8.75189 9.95255 10.11364 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033085 B = 0.003708 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.113715 B = 7548.638004 C = 8379.596201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.172 4.172 3 C 0.049 3.951 4 N -0.587 5.587 5 H 0.413 0.587 6 C 0.249 3.751 7 N -0.498 5.498 8 C 0.120 3.880 9 C -0.041 4.041 10 C -0.267 4.267 11 C -0.038 4.038 12 C -0.269 4.269 13 C 0.250 3.750 14 C -0.407 4.407 15 H 0.088 0.912 16 C 0.063 3.937 17 N -0.699 5.699 18 Si 0.911 3.089 19 H -0.258 1.258 20 H -0.271 1.271 21 H -0.271 1.271 22 N -0.487 5.487 23 C 0.156 3.844 24 C -0.069 4.069 25 C -0.130 4.130 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.170 0.830 30 H 0.156 0.844 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.277 0.723 34 H 0.122 0.878 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.692 12.170 -0.023 12.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.180 4.180 3 C -0.077 4.077 4 N -0.194 5.194 5 H 0.250 0.750 6 C 0.018 3.982 7 N -0.210 5.210 8 C -0.047 4.047 9 C -0.045 4.045 10 C -0.273 4.273 11 C -0.061 4.061 12 C -0.291 4.291 13 C 0.127 3.873 14 C -0.437 4.437 15 H 0.106 0.894 16 C -0.165 4.165 17 N -0.319 5.319 18 Si 0.735 3.265 19 H -0.182 1.182 20 H -0.196 1.196 21 H -0.196 1.196 22 N -0.199 5.199 23 C -0.013 4.013 24 C -0.096 4.096 25 C -0.137 4.137 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.187 0.813 30 H 0.173 0.827 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.139 0.861 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.540 12.221 -0.023 12.233 hybrid contribution 0.353 -0.368 0.009 0.510 sum 0.893 11.852 -0.015 11.886 Atomic orbital electron populations 1.20083 0.89576 1.02128 1.01587 1.20226 0.95256 0.90842 1.11686 1.21466 0.81751 0.98855 1.05631 1.41300 1.07495 1.04021 1.66616 0.75041 1.18312 0.90493 0.84678 1.04732 1.66304 1.33718 1.03911 1.17068 1.22521 0.96647 0.88251 0.97251 1.19534 0.92810 0.93922 0.98265 1.18831 0.95211 0.89622 1.23618 1.20621 0.96276 0.93466 0.95778 1.21424 0.97788 0.94633 1.15300 1.18677 0.86887 0.93663 0.88028 1.19823 0.93141 0.91140 1.39571 0.89350 1.26196 0.96035 1.00494 0.93729 1.70136 0.99503 1.36133 1.26101 0.86199 0.79750 0.81764 0.78800 1.18190 1.19593 1.19588 1.68809 1.32126 1.01213 1.17725 1.22740 0.93667 0.92841 0.92067 1.20903 0.99100 0.90056 0.99526 1.19661 0.93287 0.93658 1.07048 0.91975 0.92154 0.91659 0.81317 0.82681 0.88235 0.88047 0.91210 0.86083 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.42 36.00 0.38 -0.46 16 2 C -0.17 -2.35 6.32 -102.73 -0.65 -3.00 16 3 C 0.05 0.55 11.74 -16.70 -0.20 0.36 16 4 N -0.59 -7.56 6.05 -12.09 -0.07 -7.63 16 5 H 0.41 4.07 8.96 -40.82 -0.37 3.70 16 6 C 0.25 4.26 8.42 -155.58 -1.31 2.95 16 7 N -0.50 -9.09 10.37 -11.92 -0.12 -9.21 16 8 C 0.12 2.20 10.59 -17.09 -0.18 2.02 16 9 C -0.04 -0.81 5.90 -104.71 -0.62 -1.42 16 10 C -0.27 -5.84 5.92 -104.45 -0.62 -6.46 16 11 C -0.04 -0.82 9.47 -39.38 -0.37 -1.20 16 12 C -0.27 -6.31 9.76 -39.15 -0.38 -6.69 16 13 C 0.25 6.57 6.55 -84.98 -0.56 6.02 16 14 C -0.41 -10.36 9.12 -37.86 -0.35 -10.70 16 15 H 0.09 2.08 7.85 -52.49 -0.41 1.67 16 16 C 0.06 1.52 5.50 -17.33 -0.10 1.42 16 17 N -0.70 -17.75 11.44 55.55 0.64 -17.11 16 18 Si 0.91 17.56 29.56 -169.99 -5.02 12.54 16 19 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16 20 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 21 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 22 N -0.49 -12.98 7.83 -10.84 -0.08 -13.06 16 23 C 0.16 3.69 10.61 -17.12 -0.18 3.51 16 24 C -0.07 -1.27 9.59 -38.61 -0.37 -1.64 16 25 C -0.13 -2.24 6.36 -105.12 -0.67 -2.91 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.17 1.18 8.06 -52.48 -0.42 0.76 16 30 H 0.16 2.55 6.24 -52.49 -0.33 2.23 16 31 H 0.10 1.82 6.30 -52.49 -0.33 1.49 16 32 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 33 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 34 H 0.12 2.58 6.27 -52.49 -0.33 2.25 16 35 H 0.13 2.24 6.33 -52.49 -0.33 1.91 16 LS Contribution 303.61 15.07 4.58 4.58 Total: -1.00 -30.16 303.61 -9.61 -39.77 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -3.35 Total: 8.34 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -6.17 Total: -18.22 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.35 Total: -47.01 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.02 Total: 12.54 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.16 -9.61 -39.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240957106.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.561 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds