Wall clock time and date at job start Tue Mar 31 2020 00:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34196 * 126.58275 * 2 1 4 4 N 1.36930 * 109.94950 * 179.97438 * 3 2 1 5 5 H 0.96996 * 124.96312 * 180.02562 * 4 3 2 6 6 C 1.37331 * 110.07640 * 359.97438 * 4 3 2 7 7 N 1.32810 * 132.96678 * 179.97438 * 6 4 3 8 8 C 1.31327 * 121.89509 * 180.02562 * 7 6 4 9 9 C 1.40053 * 121.37332 * 359.97438 * 8 7 6 10 10 C 1.47928 * 120.45785 * 179.97438 * 9 8 7 11 11 C 1.40288 * 120.34654 * 359.97438 * 10 9 8 12 12 C 1.36663 * 118.60469 * 179.75268 * 11 10 9 13 13 C 1.40888 * 119.25807 * 0.25535 * 12 11 10 14 14 C 1.40962 * 119.68069 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99815 * 359.97438 * 14 13 12 16 16 C 1.40078 * 120.00350 * 180.02562 * 14 13 12 17 17 N 1.30726 * 119.99566 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00357 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46877 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46924 * 119.99534 * 18 16 14 21 21 H 1.48498 * 109.47565 * 240.00008 * 18 16 14 22 22 N 1.33795 * 120.64154 * 359.97438 * 13 12 11 23 23 C 1.31183 * 121.50294 * 0.02562 * 22 13 12 24 24 C 1.39669 * 119.08771 * 0.26243 * 9 8 7 25 25 C 1.39407 * 117.93592 * 359.51991 * 24 9 8 26 26 H 1.09004 * 109.47248 * 270.02499 * 1 2 3 27 27 H 1.08994 * 109.47352 * 30.02817 * 1 2 3 28 28 H 1.09005 * 109.47043 * 150.03080 * 1 2 3 29 29 H 1.08004 * 125.02596 * 359.95351 * 3 2 1 30 30 H 1.07992 * 119.31590 * 179.97438 * 8 7 6 31 31 H 1.08002 * 120.69972 * 0.03417 * 11 10 9 32 32 H 1.08005 * 120.36866 * 180.23278 * 12 11 10 33 33 H 0.97005 * 119.99786 * 179.97438 * 17 16 14 34 34 H 1.08001 * 119.65487 * 179.97438 * 23 22 13 35 35 H 1.07999 * 121.03416 * 179.72912 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3067 1.0776 0.0000 4 7 3.6187 0.6856 0.0006 5 1 4.3788 1.2882 0.0010 6 6 3.7012 -0.6852 0.0015 7 7 4.7257 -1.5304 0.0019 8 6 4.5513 -2.8320 0.0024 9 6 3.2693 -3.3960 0.0031 10 6 3.0964 -4.8651 0.0030 11 6 4.2159 -5.7106 0.0018 12 6 4.0150 -7.0623 0.0070 13 6 2.6980 -7.5627 0.0079 14 6 2.4805 -8.9554 0.0138 15 1 3.3212 -9.6333 0.0171 16 6 1.1738 -9.4603 0.0142 17 7 0.1561 -8.6398 0.0096 18 14 0.8856 -11.3059 0.0212 19 1 2.1926 -12.0110 0.0263 20 1 0.1161 -11.6820 1.2344 21 1 0.1191 -11.6919 -1.1906 22 7 1.6517 -6.7288 0.0043 23 6 1.8127 -5.4269 -0.0007 24 6 2.1564 -2.5522 -0.0024 25 6 2.3800 -1.1762 0.0021 26 1 -0.3634 0.0004 1.0277 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3633 -0.8903 -0.5134 29 1 1.9660 2.1025 -0.0007 30 1 5.4144 -3.4811 0.0023 31 1 5.2156 -5.3018 0.0014 32 1 4.8565 -7.7394 0.0100 33 1 -0.7487 -8.9894 0.0095 34 1 0.9469 -4.7814 -0.0040 35 1 1.1536 -2.9532 -0.0064 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240957106.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:16 Heat of formation + Delta-G solvation = 77.071078 kcal Electronic energy + Delta-G solvation = -19843.867640 eV Core-core repulsion = 16806.048449 eV Total energy + Delta-G solvation = -3037.819191 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.35646 -40.23170 -38.59070 -35.72516 -34.46984 -33.14647 -32.56521 -31.37139 -29.95951 -27.64322 -27.02617 -25.10848 -24.04025 -23.06550 -22.08285 -20.19760 -19.50421 -19.08402 -17.59436 -17.47253 -17.03650 -16.18972 -16.01923 -15.79494 -15.58829 -14.62394 -14.31757 -14.26338 -14.02618 -13.93801 -13.87096 -13.66240 -13.43091 -13.09463 -12.80299 -12.77032 -12.69520 -12.48685 -12.06168 -11.72720 -11.49716 -11.07737 -10.43796 -10.30083 -9.93194 -9.48694 -8.92016 -8.60884 -8.35584 -6.48112 0.00489 0.15802 1.05999 1.27328 1.41645 1.57557 1.58622 1.78103 1.96706 2.20817 2.74375 3.10893 3.59328 3.83104 3.88205 3.94881 4.07523 4.17999 4.22239 4.34864 4.50545 4.53356 4.75863 4.84528 4.91985 4.94985 4.99383 5.14037 5.17498 5.21363 5.36233 5.45545 5.53992 5.69403 5.78217 5.88758 6.08569 6.11498 6.23805 6.52687 6.65816 6.90039 7.12189 8.13041 8.37250 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033085 B = 0.003708 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.113715 B = 7548.638004 C = 8379.596201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.199 4.199 3 C 0.081 3.919 4 N -0.575 5.575 5 H 0.430 0.570 6 C 0.235 3.765 7 N -0.506 5.506 8 C 0.115 3.885 9 C -0.069 4.069 10 C -0.252 4.252 11 C -0.041 4.041 12 C -0.283 4.283 13 C 0.217 3.783 14 C -0.448 4.448 15 H 0.096 0.904 16 C 0.020 3.980 17 N -0.745 5.745 18 Si 0.991 3.009 19 H -0.251 1.251 20 H -0.266 1.266 21 H -0.266 1.266 22 N -0.520 5.520 23 C 0.131 3.869 24 C -0.070 4.070 25 C -0.152 4.152 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.225 0.775 30 H 0.171 0.829 31 H 0.135 0.865 32 H 0.116 0.884 33 H 0.282 0.718 34 H 0.133 0.867 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.094 14.842 -0.035 14.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.207 4.207 3 C -0.045 4.045 4 N -0.183 5.183 5 H 0.270 0.730 6 C 0.002 3.998 7 N -0.218 5.218 8 C -0.051 4.051 9 C -0.073 4.073 10 C -0.258 4.258 11 C -0.064 4.064 12 C -0.305 4.305 13 C 0.094 3.906 14 C -0.478 4.478 15 H 0.114 0.886 16 C -0.203 4.203 17 N -0.366 5.366 18 Si 0.811 3.189 19 H -0.174 1.174 20 H -0.190 1.190 21 H -0.190 1.190 22 N -0.233 5.233 23 C -0.036 4.036 24 C -0.097 4.097 25 C -0.159 4.159 26 H 0.086 0.914 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.241 0.759 30 H 0.188 0.812 31 H 0.152 0.848 32 H 0.134 0.866 33 H 0.093 0.907 34 H 0.150 0.850 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.961 14.958 -0.036 14.989 hybrid contribution 0.279 -0.717 0.012 0.770 sum 1.240 14.240 -0.024 14.294 Atomic orbital electron populations 1.20120 0.87836 1.02944 1.02207 1.20613 0.96716 0.90006 1.13338 1.22336 0.80280 1.00615 1.01245 1.41464 1.09062 1.02573 1.65192 0.73022 1.18699 0.90280 0.86453 1.04319 1.66360 1.34175 1.03858 1.17445 1.22674 0.96496 0.88773 0.97165 1.19454 0.94078 0.92643 1.01117 1.19074 0.94637 0.91211 1.20891 1.20991 0.97881 0.92804 0.94708 1.21629 0.97335 0.95865 1.15658 1.19139 0.88007 0.94448 0.89032 1.20152 0.94354 0.91342 1.41937 0.88636 1.27117 0.95199 1.05445 0.92550 1.70229 1.00104 1.38493 1.27764 0.85021 0.79729 0.75287 0.78872 1.17448 1.19039 1.19023 1.68743 1.33187 1.02367 1.18996 1.23029 0.95126 0.92464 0.92993 1.21046 0.98886 0.91083 0.98676 1.20077 0.94785 0.94030 1.06970 0.91440 0.89175 0.93062 0.75860 0.81231 0.84753 0.86550 0.90686 0.85006 0.85172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 10.42 71.23 0.74 -0.66 16 2 C -0.20 -4.85 6.32 -18.64 -0.12 -4.96 16 3 C 0.08 1.43 11.74 82.97 0.97 2.41 16 4 N -0.57 -12.52 6.05 -192.18 -1.16 -13.68 16 5 H 0.43 6.60 8.96 -92.71 -0.83 5.77 16 6 C 0.24 7.53 8.42 133.95 1.13 8.66 16 7 N -0.51 -17.70 10.37 -191.63 -1.99 -19.69 16 8 C 0.11 4.14 10.59 85.21 0.90 5.04 16 9 C -0.07 -2.70 5.90 -19.92 -0.12 -2.82 16 10 C -0.25 -11.30 5.92 -19.75 -0.12 -11.42 16 11 C -0.04 -1.77 9.47 22.40 0.21 -1.55 16 12 C -0.28 -13.63 9.76 22.55 0.22 -13.41 16 13 C 0.22 11.96 6.55 40.16 0.26 12.22 16 14 C -0.45 -23.80 9.12 23.38 0.21 -23.58 16 15 H 0.10 4.68 7.85 -2.91 -0.02 4.66 16 16 C 0.02 0.99 5.50 85.30 0.47 1.46 16 17 N -0.74 -39.63 11.44 21.85 0.25 -39.38 16 18 Si 0.99 36.95 29.56 68.60 2.03 38.98 16 19 H -0.25 -8.93 7.11 99.48 0.71 -8.23 16 20 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 21 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 22 N -0.52 -29.21 7.83 -188.21 -1.47 -30.68 16 23 C 0.13 6.47 10.61 85.25 0.90 7.38 16 24 C -0.07 -2.60 9.59 22.90 0.22 -2.38 16 25 C -0.15 -5.01 6.36 -20.18 -0.13 -5.13 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.23 1.48 8.06 -2.91 -0.02 1.46 16 30 H 0.17 5.38 6.24 -2.91 -0.02 5.36 16 31 H 0.13 4.76 6.30 -2.91 -0.02 4.74 16 32 H 0.12 5.08 8.06 -2.91 -0.02 5.05 16 33 H 0.28 13.44 8.29 -92.70 -0.77 12.67 16 34 H 0.13 5.95 6.27 -2.91 -0.02 5.93 16 35 H 0.13 4.63 6.33 -2.91 -0.02 4.62 16 Total: -1.00 -69.21 303.61 3.74 -65.47 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 0.32 Total: 27.75 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 5.77 Total: -28.76 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -4.37 Total: -103.44 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Total: -69.21 3.74 -65.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240957106.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.539 kcal (2) G-P(sol) polarization free energy of solvation -69.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds