Wall clock time and date at job start Tue Mar 31 2020 00:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34204 * 126.57754 * 2 1 4 4 N 1.36919 * 109.93463 * 180.02562 * 3 2 1 5 5 H 0.96997 * 124.96928 * 179.97438 * 4 3 2 6 6 C 1.37381 * 110.05762 * 359.97438 * 4 3 2 7 7 N 1.32743 * 133.00757 * 179.97438 * 6 4 3 8 8 C 1.31402 * 121.85774 * 180.02562 * 7 6 4 9 9 C 1.39764 * 121.41384 * 359.97438 * 8 7 6 10 10 C 1.48365 * 120.42643 * 180.02562 * 9 8 7 11 11 C 1.40046 * 120.81683 * 179.97438 * 10 9 8 12 12 C 1.38494 * 119.41987 * 180.02562 * 11 10 9 13 13 N 1.31486 * 121.14856 * 359.72043 * 12 11 10 14 14 C 1.33653 * 121.79117 * 0.56784 * 13 12 11 15 15 C 1.41426 * 119.77761 * 179.70759 * 14 13 12 16 16 H 1.08006 * 120.00022 * 186.78498 * 15 14 13 17 17 C 1.40039 * 120.00114 * 6.78418 * 15 14 13 18 18 N 1.30740 * 119.99697 * 182.42605 * 17 15 14 19 19 Si 1.86790 * 119.99817 * 2.41941 * 17 15 14 20 20 H 1.48496 * 109.47492 * 180.02562 * 19 17 15 21 21 H 1.48506 * 109.47633 * 300.00707 * 19 17 15 22 22 H 1.48505 * 109.47169 * 60.00364 * 19 17 15 23 23 C 1.39320 * 120.82669 * 0.02562 * 10 9 8 24 24 C 1.39350 * 119.14079 * 0.29866 * 9 8 7 25 25 C 1.39498 * 117.96166 * 359.46578 * 24 9 8 26 26 H 1.08996 * 109.46715 * 269.99617 * 1 2 3 27 27 H 1.08994 * 109.46834 * 30.00127 * 1 2 3 28 28 H 1.09006 * 109.47066 * 150.00161 * 1 2 3 29 29 H 1.07997 * 125.03244 * 0.02562 * 3 2 1 30 30 H 1.08007 * 119.29420 * 180.02562 * 8 7 6 31 31 H 1.08000 * 120.29586 * 0.03853 * 11 10 9 32 32 H 1.08006 * 119.42309 * 179.97438 * 12 11 10 33 33 H 0.96993 * 120.00760 * 354.83469 * 18 17 15 34 34 H 1.08009 * 120.57923 * 359.97438 * 23 10 9 35 35 H 1.08007 * 121.01831 * 179.70167 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3068 1.0777 0.0000 4 7 3.6186 0.6856 -0.0006 5 1 4.3789 1.2879 -0.0010 6 6 3.7004 -0.6858 -0.0004 7 7 4.7233 -1.5318 -0.0012 8 6 4.5465 -2.8339 -0.0013 9 6 3.2665 -3.3952 0.0000 10 6 3.0922 -4.8685 0.0004 11 6 1.8135 -5.4397 0.0023 12 6 1.6843 -6.8186 0.0032 13 7 2.7413 -7.6007 -0.0031 14 6 3.9830 -7.1064 0.0006 15 6 5.0896 -7.9870 -0.0002 16 1 6.0904 -7.5969 0.1132 17 6 4.8879 -9.3649 -0.1482 18 7 5.9063 -10.1834 -0.1014 19 14 3.1637 -10.0332 -0.4121 20 1 3.2198 -11.5118 -0.5380 21 1 2.3083 -9.6676 0.7455 22 1 2.5920 -9.4517 -1.6532 23 6 4.1964 -5.7181 0.0001 24 6 2.1563 -2.5530 -0.0050 25 6 2.3797 -1.1761 0.0005 26 1 -0.3632 -0.0001 1.0276 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8901 -0.5138 29 1 1.9661 2.1025 0.0004 30 1 5.4087 -3.4843 -0.0015 31 1 0.9357 -4.8105 0.0027 32 1 0.6982 -7.2591 0.0050 33 1 6.8083 -9.8323 -0.0395 34 1 5.1989 -5.3162 -0.0008 35 1 1.1535 -2.9542 -0.0089 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240963054.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:34 Heat of formation + Delta-G solvation = 78.999081 kcal Electronic energy + Delta-G solvation = -19950.971980 eV Core-core repulsion = 16913.236394 eV Total energy + Delta-G solvation = -3037.735587 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.48357 -38.90649 -37.57303 -34.11393 -33.50832 -32.37844 -30.77009 -30.28769 -28.53667 -26.68295 -25.67075 -23.61327 -23.38050 -21.42153 -20.56125 -19.42525 -18.24166 -18.16128 -16.65162 -16.24468 -15.27842 -15.11708 -14.87238 -14.48229 -13.90048 -13.42352 -13.26640 -13.16094 -13.06020 -12.86086 -12.78362 -12.46123 -12.21664 -12.09793 -12.05068 -11.50337 -10.76170 -10.67128 -10.27345 -10.15908 -9.61901 -9.32689 -9.20816 -9.16713 -8.04232 -8.01661 -7.71923 -7.57001 -7.25875 -4.82546 1.04102 1.21064 2.51533 2.57773 2.74614 2.77107 3.62842 3.67571 4.03662 4.11280 4.45150 4.50343 4.62784 4.65806 4.77247 5.06012 5.14814 5.19030 5.40143 5.49838 5.56238 5.57845 5.66968 5.73383 5.88215 6.00001 6.14818 6.29108 6.41315 6.47613 6.51748 6.60167 6.92338 6.99600 7.17417 7.27949 7.35047 7.43287 7.60179 8.03595 8.12075 8.24331 8.59437 9.43682 9.98183 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.035112 B = 0.003993 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.262806 B = 7010.606776 C = 7783.016786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.164 4.164 3 C 0.050 3.950 4 N -0.584 5.584 5 H 0.417 0.583 6 C 0.278 3.722 7 N -0.502 5.502 8 C 0.154 3.846 9 C -0.104 4.104 10 C 0.027 3.973 11 C -0.306 4.306 12 C 0.154 3.846 13 N -0.575 5.575 14 C 0.251 3.749 15 C -0.471 4.471 16 H 0.082 0.918 17 C 0.043 3.957 18 N -0.803 5.803 19 Si 1.156 2.844 20 H -0.333 1.333 21 H -0.279 1.279 22 H -0.293 1.293 23 C -0.245 4.245 24 C -0.021 4.021 25 C -0.149 4.149 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.174 0.826 30 H 0.166 0.834 31 H 0.106 0.894 32 H 0.130 0.870 33 H 0.283 0.717 34 H 0.109 0.891 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.813 18.926 -0.021 20.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.172 4.172 3 C -0.075 4.075 4 N -0.191 5.191 5 H 0.254 0.746 6 C 0.045 3.955 7 N -0.215 5.215 8 C -0.012 4.012 9 C -0.107 4.107 10 C 0.020 3.980 11 C -0.329 4.329 12 C -0.006 4.006 13 N -0.294 5.294 14 C 0.128 3.872 15 C -0.503 4.503 16 H 0.100 0.900 17 C -0.179 4.179 18 N -0.424 5.424 19 Si 0.991 3.009 20 H -0.267 1.267 21 H -0.207 1.207 22 H -0.221 1.221 23 C -0.267 4.267 24 C -0.047 4.047 25 C -0.156 4.156 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.191 0.809 30 H 0.183 0.817 31 H 0.124 0.876 32 H 0.147 0.853 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.653 17.182 -0.166 18.810 hybrid contribution 0.884 2.526 0.217 2.685 sum -6.769 19.707 0.051 20.837 Atomic orbital electron populations 1.20112 0.89287 1.02336 1.01791 1.20244 0.95416 0.90568 1.10981 1.21552 0.81539 0.99116 1.05297 1.41419 1.07856 1.03966 1.65819 0.74584 1.18460 0.90469 0.84924 1.01645 1.66468 1.33508 1.03675 1.17808 1.22704 0.96809 0.88385 0.93327 1.19671 0.93527 0.93938 1.03584 1.18447 0.94136 0.89070 0.96333 1.21135 0.95534 0.95488 1.20790 1.22028 0.96409 0.90188 0.92005 1.66493 0.99319 1.37885 1.25707 1.18565 0.90176 0.90486 0.87935 1.20816 0.93795 0.93563 1.42101 0.89975 1.27862 1.07826 0.93484 0.88692 1.70649 1.01361 1.39361 1.31039 0.81784 0.70396 0.69794 0.78894 1.26715 1.20704 1.22112 1.21699 0.96878 0.93916 1.14211 1.21044 0.99339 0.90102 0.94238 1.19710 0.93548 0.93698 1.08623 0.91750 0.91851 0.91628 0.80889 0.81731 0.87619 0.85299 0.90567 0.87309 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.42 36.01 0.38 -0.30 16 2 C -0.16 -1.89 6.32 -102.74 -0.65 -2.54 16 3 C 0.05 0.47 11.74 -16.70 -0.20 0.28 16 4 N -0.58 -6.48 6.05 -12.12 -0.07 -6.55 16 5 H 0.42 3.43 8.96 -40.82 -0.37 3.07 16 6 C 0.28 4.24 8.42 -155.62 -1.31 2.93 16 7 N -0.50 -8.47 10.37 -12.00 -0.12 -8.60 16 8 C 0.15 2.67 10.59 -17.17 -0.18 2.49 16 9 C -0.10 -1.87 5.89 -104.74 -0.62 -2.48 16 10 C 0.03 0.55 5.91 -104.65 -0.62 -0.07 16 11 C -0.31 -6.08 9.52 -38.81 -0.37 -6.45 16 12 C 0.15 3.31 11.17 -17.61 -0.20 3.11 16 13 N -0.57 -14.38 4.53 -11.21 -0.05 -14.43 16 14 C 0.25 6.44 6.40 -85.03 -0.54 5.89 16 15 C -0.47 -12.69 9.58 -37.69 -0.36 -13.06 16 16 H 0.08 2.19 8.05 -52.48 -0.42 1.77 16 17 C 0.04 1.16 5.52 -17.34 -0.10 1.06 16 18 N -0.80 -21.81 13.65 55.55 0.76 -21.05 16 19 Si 1.16 28.32 25.54 -169.99 -4.34 23.98 16 20 H -0.33 -8.08 7.11 56.52 0.40 -7.68 16 21 H -0.28 -6.79 6.68 56.52 0.38 -6.41 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 C -0.24 -5.57 9.23 -38.34 -0.35 -5.92 16 24 C -0.02 -0.33 9.60 -38.70 -0.37 -0.70 16 25 C -0.15 -2.24 6.36 -105.12 -0.67 -2.91 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.17 0.89 8.06 -52.49 -0.42 0.46 16 30 H 0.17 2.68 6.28 -52.48 -0.33 2.35 16 31 H 0.11 1.77 6.38 -52.49 -0.34 1.43 16 32 H 0.13 2.32 8.06 -52.48 -0.42 1.90 16 33 H 0.28 7.34 8.72 -40.82 -0.36 6.98 16 34 H 0.11 2.28 6.34 -52.48 -0.33 1.95 16 35 H 0.14 1.95 6.40 -52.48 -0.34 1.61 16 LS Contribution 299.37 15.07 4.51 4.51 Total: -1.00 -31.03 299.37 -8.89 -39.92 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -3.41 Total: 0.89 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -6.16 Total: -18.67 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.51 Total: -50.64 kcal Atomic # 14 Polarization: 28.32 SS G_CDS: -4.34 Total: 23.98 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.03 -8.89 -39.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240963054.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.919 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds