Wall clock time and date at job start Tue Mar 31 2020 00:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34204 * 126.57754 * 2 1 4 4 N 1.36919 * 109.93463 * 180.02562 * 3 2 1 5 5 H 0.96997 * 124.96928 * 179.97438 * 4 3 2 6 6 C 1.37381 * 110.05762 * 359.97438 * 4 3 2 7 7 N 1.32743 * 133.00757 * 179.97438 * 6 4 3 8 8 C 1.31402 * 121.85774 * 180.02562 * 7 6 4 9 9 C 1.39764 * 121.41384 * 359.97438 * 8 7 6 10 10 C 1.48365 * 120.42643 * 180.02562 * 9 8 7 11 11 C 1.40046 * 120.81683 * 179.97438 * 10 9 8 12 12 C 1.38494 * 119.41987 * 180.02562 * 11 10 9 13 13 N 1.31486 * 121.14856 * 359.72043 * 12 11 10 14 14 C 1.33653 * 121.79117 * 0.56784 * 13 12 11 15 15 C 1.41426 * 119.77761 * 179.70759 * 14 13 12 16 16 H 1.08006 * 120.00022 * 186.78498 * 15 14 13 17 17 C 1.40039 * 120.00114 * 6.78418 * 15 14 13 18 18 N 1.30740 * 119.99697 * 182.42605 * 17 15 14 19 19 Si 1.86790 * 119.99817 * 2.41941 * 17 15 14 20 20 H 1.48496 * 109.47492 * 180.02562 * 19 17 15 21 21 H 1.48506 * 109.47633 * 300.00707 * 19 17 15 22 22 H 1.48505 * 109.47169 * 60.00364 * 19 17 15 23 23 C 1.39320 * 120.82669 * 0.02562 * 10 9 8 24 24 C 1.39350 * 119.14079 * 0.29866 * 9 8 7 25 25 C 1.39498 * 117.96166 * 359.46578 * 24 9 8 26 26 H 1.08996 * 109.46715 * 269.99617 * 1 2 3 27 27 H 1.08994 * 109.46834 * 30.00127 * 1 2 3 28 28 H 1.09006 * 109.47066 * 150.00161 * 1 2 3 29 29 H 1.07997 * 125.03244 * 0.02562 * 3 2 1 30 30 H 1.08007 * 119.29420 * 180.02562 * 8 7 6 31 31 H 1.08000 * 120.29586 * 0.03853 * 11 10 9 32 32 H 1.08006 * 119.42309 * 179.97438 * 12 11 10 33 33 H 0.96993 * 120.00760 * 354.83469 * 18 17 15 34 34 H 1.08009 * 120.57923 * 359.97438 * 23 10 9 35 35 H 1.08007 * 121.01831 * 179.70167 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3068 1.0777 0.0000 4 7 3.6186 0.6856 -0.0006 5 1 4.3789 1.2879 -0.0010 6 6 3.7004 -0.6858 -0.0004 7 7 4.7233 -1.5318 -0.0012 8 6 4.5465 -2.8339 -0.0013 9 6 3.2665 -3.3952 0.0000 10 6 3.0922 -4.8685 0.0004 11 6 1.8135 -5.4397 0.0023 12 6 1.6843 -6.8186 0.0032 13 7 2.7413 -7.6007 -0.0031 14 6 3.9830 -7.1064 0.0006 15 6 5.0896 -7.9870 -0.0002 16 1 6.0904 -7.5969 0.1132 17 6 4.8879 -9.3649 -0.1482 18 7 5.9063 -10.1834 -0.1014 19 14 3.1637 -10.0332 -0.4121 20 1 3.2198 -11.5118 -0.5380 21 1 2.3083 -9.6676 0.7455 22 1 2.5920 -9.4517 -1.6532 23 6 4.1964 -5.7181 0.0001 24 6 2.1563 -2.5530 -0.0050 25 6 2.3797 -1.1761 0.0005 26 1 -0.3632 -0.0001 1.0276 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8901 -0.5138 29 1 1.9661 2.1025 0.0004 30 1 5.4087 -3.4843 -0.0015 31 1 0.9357 -4.8105 0.0027 32 1 0.6982 -7.2591 0.0050 33 1 6.8083 -9.8323 -0.0395 34 1 5.1989 -5.3162 -0.0008 35 1 1.1535 -2.9542 -0.0089 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240963054.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:33 Heat of formation + Delta-G solvation = 61.139230 kcal Electronic energy + Delta-G solvation = -19951.746442 eV Core-core repulsion = 16913.236394 eV Total energy + Delta-G solvation = -3038.510048 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 3.66 seconds Orbital eigenvalues (eV) -42.53734 -40.56952 -38.84305 -35.87757 -34.88880 -33.63253 -32.37687 -31.61240 -29.89390 -27.63353 -27.33640 -24.93032 -24.78478 -22.92675 -22.22278 -20.55364 -19.95436 -19.21848 -17.83621 -17.74371 -16.77772 -16.44512 -16.16450 -16.07691 -15.59774 -14.78866 -14.62146 -14.48404 -14.28740 -14.19956 -13.96399 -13.83658 -13.64968 -13.38634 -13.22122 -12.59488 -12.46998 -12.35190 -11.97013 -11.59264 -11.55233 -11.28114 -10.58275 -10.45619 -9.87433 -9.63225 -9.22465 -9.12575 -8.77170 -6.81394 -0.24526 -0.00038 0.70509 1.13473 1.64468 1.69742 1.76748 1.82967 2.10319 2.51207 2.63675 2.91212 3.40250 3.62501 3.65642 3.75913 3.83190 3.95610 3.99586 4.30842 4.42890 4.50189 4.58172 4.68301 4.74392 4.82631 5.00600 5.04321 5.13265 5.18401 5.27685 5.34691 5.39503 5.45553 5.63137 5.68625 5.85033 5.96766 6.03847 6.36619 6.40141 6.66917 6.96542 7.59775 7.97738 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.035112 B = 0.003993 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.262806 B = 7010.606776 C = 7783.016786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.184 4.184 3 C 0.077 3.923 4 N -0.574 5.574 5 H 0.431 0.569 6 C 0.257 3.743 7 N -0.516 5.516 8 C 0.139 3.861 9 C -0.130 4.130 10 C 0.036 3.964 11 C -0.282 4.282 12 C 0.137 3.863 13 N -0.597 5.597 14 C 0.240 3.760 15 C -0.513 4.513 16 H 0.063 0.937 17 C 0.014 3.986 18 N -0.833 5.833 19 Si 1.191 2.809 20 H -0.333 1.333 21 H -0.276 1.276 22 H -0.294 1.294 23 C -0.267 4.267 24 C -0.015 4.015 25 C -0.163 4.163 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.226 0.774 30 H 0.160 0.840 31 H 0.148 0.852 32 H 0.169 0.831 33 H 0.279 0.721 34 H 0.112 0.888 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.351 23.087 -0.059 25.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.191 4.191 3 C -0.048 4.048 4 N -0.181 5.181 5 H 0.271 0.729 6 C 0.023 3.977 7 N -0.229 5.229 8 C -0.027 4.027 9 C -0.134 4.134 10 C 0.029 3.971 11 C -0.304 4.304 12 C -0.022 4.022 13 N -0.317 5.317 14 C 0.116 3.884 15 C -0.546 4.546 16 H 0.081 0.919 17 C -0.201 4.201 18 N -0.457 5.457 19 Si 1.024 2.976 20 H -0.267 1.267 21 H -0.204 1.204 22 H -0.222 1.222 23 C -0.289 4.289 24 C -0.041 4.041 25 C -0.170 4.170 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.243 0.757 30 H 0.177 0.823 31 H 0.165 0.835 32 H 0.186 0.814 33 H 0.090 0.910 34 H 0.130 0.870 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.198 21.382 -0.201 24.137 hybrid contribution 1.777 1.775 0.238 2.523 sum -9.421 23.156 0.037 24.999 Atomic orbital electron populations 1.20175 0.87148 1.03401 1.02563 1.20646 0.96967 0.89448 1.12068 1.22443 0.80038 1.00977 1.01357 1.41621 1.09459 1.02560 1.64463 0.72898 1.18852 0.90486 0.86598 1.01785 1.66435 1.34536 1.03618 1.18302 1.22632 0.96772 0.88893 0.94418 1.19498 0.94628 0.92519 1.06789 1.18751 0.93774 0.90565 0.94048 1.21677 0.96598 0.95513 1.16605 1.22755 0.97040 0.91010 0.91392 1.66420 0.99742 1.39288 1.26216 1.18666 0.90337 0.91455 0.87969 1.20765 0.93727 0.94246 1.45853 0.91855 1.28593 1.09426 0.93830 0.88285 1.70671 1.01376 1.39403 1.34238 0.81320 0.68378 0.69272 0.78633 1.26722 1.20374 1.22240 1.21789 0.98264 0.93315 1.15484 1.21226 0.99323 0.90605 0.92906 1.20126 0.94514 0.94299 1.08064 0.91061 0.89276 0.92175 0.75718 0.82292 0.83451 0.81421 0.91020 0.87012 0.82642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.42 71.24 0.74 -0.19 16 2 C -0.18 -3.40 6.32 -18.64 -0.12 -3.52 16 3 C 0.08 1.03 11.74 82.98 0.97 2.00 16 4 N -0.57 -10.52 6.05 -192.25 -1.16 -11.68 16 5 H 0.43 5.47 8.96 -92.71 -0.83 4.64 16 6 C 0.26 7.26 8.42 133.94 1.13 8.39 16 7 N -0.52 -17.12 10.37 -191.87 -1.99 -19.11 16 8 C 0.14 4.86 10.59 85.13 0.90 5.76 16 9 C -0.13 -4.56 5.89 -19.94 -0.12 -4.68 16 10 C 0.04 1.43 5.91 -19.88 -0.12 1.31 16 11 C -0.28 -10.34 9.52 22.77 0.22 -10.13 16 12 C 0.14 5.53 11.17 84.81 0.95 6.48 16 13 N -0.60 -29.69 4.53 -189.37 -0.86 -30.55 16 14 C 0.24 12.67 6.40 40.19 0.26 12.93 16 15 C -0.51 -29.36 9.58 23.49 0.23 -29.14 16 16 H 0.06 3.69 8.05 -2.91 -0.02 3.67 16 17 C 0.01 0.82 5.52 85.29 0.47 1.29 16 18 N -0.83 -47.78 13.65 21.84 0.30 -47.49 16 19 Si 1.19 58.81 25.54 68.60 1.75 60.56 16 20 H -0.33 -16.15 7.11 99.48 0.71 -15.45 16 21 H -0.28 -13.28 6.68 99.48 0.66 -12.61 16 22 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 23 C -0.27 -12.48 9.23 23.07 0.21 -12.27 16 24 C -0.01 -0.43 9.60 22.84 0.22 -0.21 16 25 C -0.16 -4.40 6.36 -20.19 -0.13 -4.53 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.23 0.61 8.06 -2.91 -0.02 0.59 16 30 H 0.16 5.50 6.28 -2.91 -0.02 5.48 16 31 H 0.15 4.17 6.38 -2.91 -0.02 4.15 16 32 H 0.17 5.37 8.06 -2.91 -0.02 5.35 16 33 H 0.28 15.52 8.72 -92.71 -0.81 14.71 16 34 H 0.11 5.00 6.34 -2.91 -0.02 4.98 16 35 H 0.16 3.79 6.40 -2.91 -0.02 3.77 16 Total: -1.00 -71.00 299.37 4.09 -66.91 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.24 Total: 7.84 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: 5.81 Total: -26.49 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -3.71 Total: -108.82 kcal Atomic # 14 Polarization: 58.81 SS G_CDS: 1.75 Total: 60.56 kcal Total: -71.00 4.09 -66.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240963054.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.047 kcal (2) G-P(sol) polarization free energy of solvation -70.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.66 seconds