Wall clock time and date at job start Tue Mar 31 2020 00:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34195 * 126.57829 * 2 1 4 4 N 1.36936 * 109.94469 * 179.97438 * 3 2 1 5 5 H 0.96997 * 124.95887 * 179.97438 * 4 3 2 6 6 C 1.37336 * 110.07900 * 0.02562 * 4 3 2 7 7 N 1.32810 * 132.96017 * 179.71170 * 6 4 3 8 8 C 1.31315 * 121.90273 * 179.85388 * 7 6 4 9 9 C 1.40095 * 121.36561 * 0.46767 * 8 7 6 10 10 C 1.47821 * 120.46549 * 179.74706 * 9 8 7 11 11 C 1.39332 * 120.78625 * 129.74265 * 10 9 8 12 12 N 1.31665 * 120.65878 * 179.70911 * 11 10 9 13 13 C 1.32226 * 122.50128 * 0.59269 * 12 11 10 14 14 C 1.36454 * 121.51565 * 359.69771 * 13 12 11 15 15 C 1.41129 * 119.11394 * 0.02562 * 14 13 12 16 16 C 1.40904 * 121.11058 * 180.02562 * 15 14 13 17 17 H 1.08006 * 119.99687 * 154.61225 * 16 15 14 18 18 C 1.40155 * 119.99942 * 334.60894 * 16 15 14 19 19 N 1.30695 * 120.00448 * 344.32768 * 18 16 15 20 20 Si 1.86802 * 120.00017 * 164.32773 * 18 16 15 21 21 H 1.48504 * 109.46962 * 59.99914 * 20 18 16 22 22 H 1.48500 * 109.47168 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47384 * 300.00417 * 20 18 16 24 24 C 1.39712 * 119.07648 * 359.77435 * 9 8 7 25 25 C 1.39395 * 117.93610 * 359.97438 * 24 9 8 26 26 H 1.09002 * 109.46998 * 270.03957 * 1 2 3 27 27 H 1.08997 * 109.47138 * 30.04129 * 1 2 3 28 28 H 1.09007 * 109.46771 * 150.04581 * 1 2 3 29 29 H 1.07995 * 125.02772 * 359.96300 * 3 2 1 30 30 H 1.08000 * 119.31918 * 180.25893 * 8 7 6 31 31 H 1.08004 * 119.67110 * 0.02562 * 11 10 9 32 32 H 1.08003 * 119.23892 * 179.72502 * 13 12 11 33 33 H 1.08005 * 120.44320 * 180.02562 * 14 13 12 34 34 H 0.96998 * 120.00575 * 179.97438 * 19 18 16 35 35 H 1.07999 * 121.03462 * 179.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3067 1.0776 0.0000 4 7 3.6188 0.6857 0.0006 5 1 4.3789 1.2883 0.0003 6 6 3.7013 -0.6852 0.0004 7 7 4.7259 -1.5303 -0.0041 8 6 4.5520 -2.8318 -0.0003 9 6 3.2697 -3.3962 -0.0010 10 6 3.0970 -4.8642 -0.0023 11 6 2.2534 -5.4839 0.9175 12 7 2.0970 -6.7912 0.9104 13 6 2.7277 -7.5775 0.0547 14 6 3.5806 -7.0724 -0.8831 15 6 3.7929 -5.6783 -0.9382 16 6 4.6641 -5.1116 -1.8897 17 1 4.5260 -4.0883 -2.2063 18 6 5.7097 -5.8759 -2.4253 19 7 6.0731 -6.9869 -1.8408 20 14 6.5843 -5.3065 -3.9747 21 1 7.1984 -3.9757 -3.7357 22 1 7.6433 -6.2839 -4.3329 23 1 5.6059 -5.2075 -5.0873 24 6 2.1564 -2.5521 -0.0010 25 6 2.3801 -1.1762 0.0002 26 1 -0.3633 0.0007 1.0277 27 1 -0.3633 0.8896 -0.5145 28 1 -0.3633 -0.8905 -0.5132 29 1 1.9660 2.1024 -0.0006 30 1 5.4153 -3.4807 0.0000 31 1 1.7186 -4.8854 1.6401 32 1 2.5637 -8.6441 0.0988 33 1 4.0865 -7.7308 -1.5739 34 1 6.7965 -7.5161 -2.2116 35 1 1.1536 -2.9531 -0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240963900.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:36 Heat of formation + Delta-G solvation = 68.364257 kcal Electronic energy + Delta-G solvation = -20474.138870 eV Core-core repulsion = 17435.942123 eV Total energy + Delta-G solvation = -3038.196747 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -42.33607 -40.31617 -38.52967 -36.06239 -34.61401 -33.28377 -32.18320 -31.20887 -29.49712 -27.94632 -27.26166 -24.86484 -23.99471 -23.26951 -22.01111 -20.16581 -19.46860 -19.04769 -17.72220 -17.29654 -16.90824 -16.27233 -16.13668 -15.92018 -15.74744 -14.61060 -14.38262 -14.17736 -14.12757 -13.95292 -13.83237 -13.59657 -13.47730 -13.22587 -13.10905 -12.89615 -12.64719 -12.43581 -12.01719 -11.69900 -11.33165 -11.10249 -10.45320 -10.02082 -9.87173 -9.62690 -8.98661 -8.76723 -8.59010 -6.54028 0.12309 0.26951 0.97778 1.06825 1.35247 1.45071 1.53663 1.81027 1.98482 2.14081 2.73437 2.99905 3.64612 3.68756 3.88999 3.95428 4.02300 4.22959 4.24622 4.48792 4.55261 4.67342 4.80452 4.89326 4.97648 5.02505 5.02960 5.19014 5.22818 5.26327 5.40147 5.49424 5.57603 5.67404 5.73934 5.90566 6.12969 6.18639 6.49069 6.55964 6.76290 6.79919 7.17408 7.71788 8.18196 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016092 B = 0.006209 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.541726 B = 4508.315850 C = 5785.903431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.193 4.193 3 C 0.077 3.923 4 N -0.576 5.576 5 H 0.429 0.571 6 C 0.243 3.757 7 N -0.520 5.520 8 C 0.146 3.854 9 C -0.071 4.071 10 C -0.227 4.227 11 C 0.122 3.878 12 N -0.588 5.588 13 C 0.079 3.921 14 C -0.227 4.227 15 C 0.120 3.880 16 C -0.460 4.460 17 H 0.075 0.925 18 C 0.046 3.954 19 N -0.801 5.801 20 Si 0.972 3.028 21 H -0.264 1.264 22 H -0.260 1.260 23 H -0.261 1.261 24 C -0.048 4.048 25 C -0.158 4.158 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.052 0.948 29 H 0.226 0.774 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.117 0.883 34 H 0.295 0.705 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.982 13.919 0.004 14.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.200 4.200 3 C -0.049 4.049 4 N -0.184 5.184 5 H 0.268 0.732 6 C 0.010 3.990 7 N -0.233 5.233 8 C -0.019 4.019 9 C -0.076 4.076 10 C -0.233 4.233 11 C -0.035 4.035 12 N -0.302 5.302 13 C -0.069 4.069 14 C -0.249 4.249 15 C 0.112 3.888 16 C -0.490 4.490 17 H 0.093 0.907 18 C -0.173 4.173 19 N -0.426 5.426 20 Si 0.793 3.207 21 H -0.189 1.189 22 H -0.184 1.184 23 H -0.185 1.185 24 C -0.074 4.074 25 C -0.165 4.165 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.242 0.758 30 H 0.163 0.837 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.135 0.865 34 H 0.106 0.894 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.459 13.792 0.606 14.507 hybrid contribution 0.976 -0.184 -1.217 1.571 sum -3.483 13.608 -0.611 14.059 Atomic orbital electron populations 1.20125 0.87473 1.02966 1.02368 1.20613 0.96798 0.89683 1.12903 1.22352 0.80146 1.00709 1.01686 1.41509 1.09203 1.02491 1.65215 0.73187 1.18790 0.90429 0.86486 1.03279 1.66373 1.34546 1.03869 1.18493 1.22496 0.96815 0.88177 0.94454 1.19267 0.93517 0.92790 1.01992 1.19547 1.09434 0.91857 1.02437 1.22457 0.94533 0.90779 0.95742 1.67393 1.28785 1.05808 1.28247 1.22059 0.93679 0.99061 0.92143 1.21891 1.03324 0.96415 1.03270 1.18079 0.89236 0.91846 0.89668 1.19605 1.10163 0.99440 1.19822 0.90692 1.26691 0.96889 0.93867 0.99820 1.69754 1.23431 1.12732 1.36660 0.85384 0.78248 0.79350 0.77728 1.18877 1.18403 1.18540 1.21150 0.98582 0.90844 0.96863 1.20073 0.94538 0.94125 1.07792 0.91111 0.89269 0.92903 0.75810 0.83683 0.83825 0.84002 0.86523 0.89363 0.84557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 10.42 71.24 0.74 -0.58 16 2 C -0.19 -4.80 6.32 -18.64 -0.12 -4.92 16 3 C 0.08 1.46 11.74 82.97 0.97 2.43 16 4 N -0.58 -14.08 6.05 -192.17 -1.16 -15.25 16 5 H 0.43 7.88 8.96 -92.71 -0.83 7.05 16 6 C 0.24 8.63 8.42 133.95 1.13 9.76 16 7 N -0.52 -21.41 10.37 -191.59 -1.99 -23.39 16 8 C 0.15 6.50 9.23 85.22 0.79 7.28 16 9 C -0.07 -3.14 5.00 -19.93 -0.10 -3.24 16 10 C -0.23 -10.94 5.56 -19.49 -0.11 -11.05 16 11 C 0.12 5.63 10.73 84.98 0.91 6.54 16 12 N -0.59 -28.20 10.32 -196.19 -2.02 -30.23 16 13 C 0.08 3.75 11.09 84.22 0.93 4.68 16 14 C -0.23 -11.61 8.72 22.56 0.20 -11.41 16 15 C 0.12 6.24 5.59 -20.92 -0.12 6.13 16 16 C -0.46 -23.62 7.30 23.39 0.17 -23.45 16 17 H 0.07 3.89 6.70 -2.91 -0.02 3.87 16 18 C 0.05 2.22 5.21 85.33 0.44 2.67 16 19 N -0.80 -39.31 10.95 21.86 0.24 -39.07 16 20 Si 0.97 37.13 29.59 68.60 2.03 39.16 16 21 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 22 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 23 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 24 C -0.05 -1.84 9.76 22.91 0.22 -1.62 16 25 C -0.16 -5.49 6.36 -20.19 -0.13 -5.62 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.23 1.74 8.06 -2.91 -0.02 1.71 16 30 H 0.15 6.86 7.35 -2.91 -0.02 6.84 16 31 H 0.14 5.78 8.06 -2.91 -0.02 5.76 16 32 H 0.14 5.88 8.06 -2.91 -0.02 5.86 16 33 H 0.12 6.07 6.26 -2.91 -0.02 6.05 16 34 H 0.30 13.04 8.29 -92.71 -0.77 12.27 16 35 H 0.14 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -64.17 304.26 3.35 -60.82 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: 0.31 Total: 30.34 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 5.94 Total: -22.39 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -4.93 Total: -107.93 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Total: -64.17 3.35 -60.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240963900.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.182 kcal (2) G-P(sol) polarization free energy of solvation -64.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds