Wall clock time and date at job start Tue Mar 31 2020 01:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39845 * 125.44455 * 2 1 4 4 C 1.30232 * 110.11057 * 179.97438 * 3 2 1 5 5 C 1.45994 * 107.76014 * 0.02562 * 4 3 2 6 6 C 1.39789 * 133.89462 * 180.02562 * 5 4 3 7 7 C 1.38558 * 119.42928 * 179.97438 * 6 5 4 8 8 C 1.48422 * 119.88422 * 179.97438 * 7 6 5 9 9 C 1.39706 * 120.40996 * 359.72651 * 8 7 6 10 10 N 1.31923 * 121.14523 * 179.69963 * 9 8 7 11 11 C 1.31517 * 122.11926 * 0.58953 * 10 9 8 12 12 C 1.40772 * 120.66952 * 359.70149 * 11 10 9 13 13 C 1.41434 * 120.60713 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00016 * 23.51795 * 13 12 11 15 15 C 1.39943 * 120.00069 * 203.51264 * 13 12 11 16 16 N 1.30824 * 119.99604 * 17.54926 * 15 13 12 17 17 Si 1.86796 * 119.99833 * 197.55086 * 15 13 12 18 18 H 1.48503 * 109.47314 * 90.00000 * 17 15 13 19 19 H 1.48504 * 109.47108 * 210.00011 * 17 15 13 20 20 H 1.48503 * 109.47372 * 329.99932 * 17 15 13 21 21 C 1.39138 * 120.40714 * 180.02562 * 8 7 6 22 22 C 1.40016 * 120.22549 * 0.02562 * 7 6 5 23 23 C 1.36334 * 120.69883 * 359.97072 * 22 7 6 24 24 C 1.37062 * 125.44603 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47246 * 90.02441 * 1 2 3 26 26 H 1.09005 * 109.46869 * 210.02468 * 1 2 3 27 27 H 1.09002 * 109.47323 * 330.02291 * 1 2 3 28 28 H 1.07998 * 126.12209 * 180.02562 * 4 3 2 29 29 H 1.07998 * 120.28152 * 359.93743 * 6 5 4 30 30 H 1.07995 * 119.42757 * 359.97438 * 9 8 7 31 31 H 1.08004 * 119.67026 * 179.67990 * 11 10 9 32 32 H 0.97005 * 119.99431 * 180.02562 * 16 15 13 33 33 H 1.07998 * 120.95251 * 0.02562 * 21 8 7 34 34 H 1.08005 * 119.65488 * 180.02562 * 22 7 6 35 35 H 1.08005 * 119.91985 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2760 1.1393 0.0000 4 6 3.5319 0.7949 0.0005 5 6 3.5937 -0.6637 0.0003 6 6 4.6412 -1.5894 0.0011 7 6 4.3522 -2.9445 0.0011 8 6 5.4565 -3.9362 0.0014 9 6 6.7877 -3.5122 -0.0041 10 7 7.7805 -4.3810 0.0020 11 6 7.5732 -5.6797 0.0020 12 6 6.2644 -6.1980 0.0017 13 6 6.0430 -7.5949 0.0011 14 1 6.8055 -8.2626 0.3741 15 6 4.8359 -8.1119 -0.4826 16 7 4.0636 -7.3731 -1.2371 17 14 4.3275 -9.8567 -0.0510 18 1 3.5327 -9.8448 1.2034 19 1 3.5056 -10.4196 -1.1524 20 1 5.5399 -10.6930 0.1391 21 6 5.1787 -5.2996 0.0009 22 6 3.0220 -3.3815 -0.0002 23 6 1.9948 -2.4850 -0.0009 24 6 2.2599 -1.1166 0.0005 25 1 -0.3634 -0.0004 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5135 28 1 4.3766 1.4678 0.0011 29 1 5.6669 -1.2512 0.0011 30 1 7.0078 -2.4550 -0.0090 31 1 8.4157 -6.3555 0.0018 32 1 3.2267 -7.7313 -1.5722 33 1 4.1603 -5.6589 -0.0001 34 1 2.8072 -4.4400 0.0003 35 1 0.9734 -2.8361 -0.0015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241439369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:49 Heat of formation + Delta-G solvation = 94.878601 kcal Electronic energy + Delta-G solvation = -20064.848565 eV Core-core repulsion = 17027.801566 eV Total energy + Delta-G solvation = -3037.046999 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -42.18729 -40.30098 -38.10992 -35.94896 -34.45755 -33.27712 -32.30300 -31.15454 -29.60059 -27.54518 -27.27922 -24.52373 -24.17651 -22.81942 -21.74233 -21.61808 -19.17567 -18.29254 -17.72454 -17.33744 -16.87796 -16.45999 -16.42977 -15.60748 -15.32476 -14.86587 -14.69914 -14.46481 -14.42966 -13.88128 -13.82865 -13.42150 -13.31394 -13.12486 -12.97166 -12.74801 -12.64092 -12.22295 -12.05742 -11.82205 -11.57703 -11.19593 -11.14530 -10.25523 -9.98089 -9.72418 -9.47412 -8.71343 -8.37696 -6.43900 -0.05937 0.06691 0.95529 1.26338 1.41077 1.48356 1.53770 1.54077 1.56359 2.19839 2.65526 2.95173 3.48963 3.60802 3.78141 3.80828 3.89646 4.17335 4.20901 4.41074 4.43869 4.44238 4.57137 4.66203 4.72184 4.78444 4.89960 4.93290 5.13614 5.20516 5.22866 5.41676 5.51346 5.57300 5.81836 5.91218 5.94614 6.06941 6.10427 6.51510 6.62058 6.77029 6.79875 7.71886 8.25427 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021753 B = 0.004586 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.878097 B = 6103.741175 C = 7307.365764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.418 5.418 3 N -0.277 5.277 4 C 0.082 3.918 5 C -0.195 4.195 6 C -0.033 4.033 7 C -0.081 4.081 8 C -0.077 4.077 9 C -0.037 4.037 10 N -0.479 5.479 11 C -0.045 4.045 12 C 0.039 3.961 13 C -0.482 4.482 14 H 0.085 0.915 15 C 0.039 3.961 16 N -0.816 5.816 17 Si 0.985 3.015 18 H -0.261 1.261 19 H -0.267 1.267 20 H -0.258 1.258 21 C -0.145 4.145 22 C -0.065 4.065 23 C -0.137 4.137 24 C 0.111 3.889 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.232 0.768 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.133 0.867 32 H 0.293 0.707 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.519 9.503 1.906 13.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.207 5.207 3 N -0.089 5.089 4 C -0.115 4.115 5 C -0.203 4.203 6 C -0.053 4.053 7 C -0.083 4.083 8 C -0.079 4.079 9 C -0.195 4.195 10 N -0.187 5.187 11 C -0.205 4.205 12 C 0.035 3.965 13 C -0.511 4.511 14 H 0.103 0.897 15 C -0.177 4.177 16 N -0.441 5.441 17 Si 0.805 3.195 18 H -0.185 1.185 19 H -0.192 1.192 20 H -0.182 1.182 21 C -0.171 4.171 22 C -0.086 4.086 23 C -0.159 4.159 24 C -0.004 4.004 25 H 0.097 0.903 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.248 0.752 29 H 0.164 0.836 30 H 0.170 0.830 31 H 0.150 0.850 32 H 0.104 0.896 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.934 10.831 1.756 14.801 hybrid contribution -0.416 -1.952 -0.057 1.996 sum -10.349 8.879 1.699 13.742 Atomic orbital electron populations 1.22035 0.72258 1.05482 1.04031 1.48436 1.06934 1.00430 1.64939 1.76471 1.03284 1.09614 1.19580 1.25639 0.95270 0.92507 0.98065 1.20083 0.92863 0.94357 1.13004 1.20767 0.98880 0.90232 0.95393 1.18633 0.92484 0.92636 1.04548 1.19648 0.93901 0.93258 1.01125 1.22307 0.87638 0.98531 1.11013 1.66947 1.37102 1.04036 1.10575 1.22679 0.95685 0.91018 1.11093 1.18791 0.92460 0.95220 0.90076 1.19842 1.02046 0.92021 1.37238 0.89737 1.26774 0.94973 1.04474 0.91486 1.69831 1.11376 1.40243 1.22648 0.85154 0.79179 0.76144 0.79026 1.18544 1.19196 1.18150 1.21872 0.99791 0.91229 1.04221 1.20921 0.91681 0.99934 0.96051 1.19801 1.00379 0.88281 1.07433 1.19031 0.91319 0.89904 1.00100 0.90330 0.88284 0.88388 0.75163 0.83579 0.83013 0.84970 0.89640 0.85496 0.85767 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.64 11.39 127.77 1.46 3.10 16 2 N -0.42 -10.77 4.05 -360.88 -1.46 -12.23 16 3 N -0.28 -7.34 12.40 -53.05 -0.66 -8.00 16 4 C 0.08 1.99 12.29 86.94 1.07 3.06 16 5 C -0.20 -5.83 6.36 -20.25 -0.13 -5.96 16 6 C -0.03 -1.06 9.49 22.72 0.22 -0.84 16 7 C -0.08 -3.11 5.87 -20.06 -0.12 -3.23 16 8 C -0.08 -3.54 5.88 -19.99 -0.12 -3.66 16 9 C -0.04 -1.67 10.59 85.03 0.90 -0.77 16 10 N -0.48 -23.78 10.32 -192.77 -1.99 -25.77 16 11 C -0.04 -2.29 10.96 85.36 0.94 -1.35 16 12 C 0.04 2.06 5.59 -21.22 -0.12 1.94 16 13 C -0.48 -24.88 9.08 23.47 0.21 -24.67 16 14 H 0.08 4.17 7.90 -2.91 -0.02 4.15 16 15 C 0.04 1.87 5.18 85.26 0.44 2.31 16 16 N -0.82 -39.92 10.91 21.83 0.24 -39.68 16 17 Si 0.98 35.84 29.59 68.60 2.03 37.87 16 18 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 19 H -0.27 -9.26 7.11 99.48 0.71 -8.55 16 20 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 21 C -0.15 -7.40 8.16 23.14 0.19 -7.21 16 22 C -0.07 -2.33 9.35 22.26 0.21 -2.12 16 23 C -0.14 -4.05 9.92 22.10 0.22 -3.83 16 24 C 0.11 3.29 6.87 39.25 0.27 3.56 16 25 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.10 1.25 8.13 -2.38 -0.02 1.23 16 27 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.23 3.48 8.06 -2.91 -0.02 3.45 16 29 H 0.15 4.15 6.19 -2.91 -0.02 4.13 16 30 H 0.15 5.77 6.18 -2.91 -0.02 5.75 16 31 H 0.13 6.34 8.06 -2.91 -0.02 6.32 16 32 H 0.29 12.81 8.30 -92.70 -0.77 12.04 16 33 H 0.13 6.46 4.40 -2.91 -0.01 6.45 16 34 H 0.12 4.66 6.22 -2.91 -0.02 4.65 16 35 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -64.08 303.37 4.93 -59.15 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 1.13 Total: 28.32 kcal Atomic # 6 Polarization: -45.31 SS G_CDS: 5.63 Total: -39.67 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -3.87 Total: -85.68 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 2.03 Total: 37.87 kcal Total: -64.08 4.93 -59.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241439369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.033 kcal (2) G-P(sol) polarization free energy of solvation -64.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds