Wall clock time and date at job start Tue Mar 31 2020 01:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.39850 * 125.43771 * 2 1 4 4 C 1.30221 * 110.11123 * 180.02562 * 3 2 1 5 5 C 1.46005 * 107.75455 * 0.02562 * 4 3 2 6 6 C 1.39759 * 133.89644 * 180.27959 * 5 4 3 7 7 C 1.38598 * 119.43237 * 180.16550 * 6 5 4 8 8 C 1.48361 * 119.89161 * 179.79643 * 7 6 5 9 9 C 1.40048 * 120.82367 * 359.70035 * 8 7 6 10 10 C 1.38487 * 119.42168 * 180.02562 * 9 8 7 11 11 N 1.31491 * 121.14732 * 0.02678 * 10 9 8 12 12 C 1.33648 * 121.79926 * 359.95158 * 11 10 9 13 13 C 1.41422 * 119.78051 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00183 * 180.02562 * 13 12 11 15 15 C 1.40025 * 120.00210 * 359.97438 * 13 12 11 16 16 N 1.30740 * 119.99876 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00471 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46823 * 60.00103 * 17 15 13 19 19 H 1.48496 * 109.47439 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47091 * 300.00765 * 17 15 13 21 21 C 1.39335 * 120.82055 * 179.72725 * 8 7 6 22 22 C 1.40058 * 120.21376 * 359.51961 * 7 6 5 23 23 C 1.36305 * 120.69612 * 0.25225 * 22 7 6 24 24 C 1.37022 * 125.44189 * 180.02562 * 2 1 3 25 25 H 1.09007 * 109.46935 * 269.97247 * 1 2 3 26 26 H 1.08996 * 109.47419 * 29.96775 * 1 2 3 27 27 H 1.08999 * 109.47082 * 149.97417 * 1 2 3 28 28 H 1.07995 * 126.12393 * 179.97438 * 4 3 2 29 29 H 1.08001 * 120.27934 * 359.94379 * 6 5 4 30 30 H 1.07993 * 120.29058 * 0.02562 * 9 8 7 31 31 H 1.08003 * 119.42516 * 180.02562 * 10 9 8 32 32 H 0.96999 * 120.00039 * 179.97438 * 16 15 13 33 33 H 1.07998 * 120.58384 * 359.69607 * 21 8 7 34 34 H 1.07993 * 119.64896 * 180.27585 * 22 7 6 35 35 H 1.08005 * 119.92249 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2759 1.1394 0.0000 4 6 3.5318 0.7952 -0.0005 5 6 3.5936 -0.6635 -0.0016 6 6 4.6409 -1.5890 0.0024 7 6 4.3519 -2.9445 -0.0036 8 6 5.4557 -3.9358 -0.0040 9 6 6.7932 -3.5205 -0.0046 10 6 7.8006 -4.4708 -0.0055 11 7 7.5231 -5.7561 -0.0063 12 6 6.2642 -6.2048 -0.0053 13 6 6.0147 -7.5969 -0.0057 14 1 4.9987 -7.9634 -0.0053 15 6 7.0847 -8.5000 -0.0076 16 7 8.3146 -8.0564 -0.0085 17 14 6.7552 -10.3388 -0.0074 18 1 5.9768 -10.7023 -1.2188 19 1 8.0459 -11.0730 -0.0090 20 1 5.9806 -10.7027 1.2063 21 6 5.1873 -5.3031 -0.0043 22 6 3.0212 -3.3815 -0.0035 23 6 1.9945 -2.4850 -0.0026 24 6 2.2596 -1.1163 -0.0005 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5133 27 1 -0.3633 -0.8897 -0.5142 28 1 4.3764 1.4682 -0.0011 29 1 5.6665 -1.2508 0.0066 30 1 7.0369 -2.4685 -0.0044 31 1 8.8320 -4.1506 -0.0055 32 1 9.0558 -8.6820 -0.0095 33 1 4.1691 -5.6632 0.0007 34 1 2.8065 -4.4398 -0.0037 35 1 0.9730 -2.8358 -0.0030 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241439805.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:11 Heat of formation + Delta-G solvation = 122.548530 kcal Electronic energy + Delta-G solvation = -19790.570065 eV Core-core repulsion = 16754.722924 eV Total energy + Delta-G solvation = -3035.847141 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.10148 -38.45926 -36.79031 -33.67844 -33.45282 -31.76714 -30.42328 -29.67622 -28.46206 -26.38089 -25.76132 -23.09388 -22.71149 -21.06044 -20.54238 -20.35283 -17.57811 -17.13578 -16.11252 -15.73196 -15.48561 -14.90605 -14.61535 -14.36448 -13.74627 -13.62007 -13.38843 -13.14745 -13.13195 -12.68479 -12.39779 -12.35724 -11.58886 -11.52056 -11.37760 -11.15945 -10.97820 -10.80650 -10.60889 -10.31611 -10.03933 -9.82024 -9.38517 -8.79288 -8.31341 -7.67158 -7.58048 -7.15081 -6.41159 -4.54475 1.11075 1.44137 2.40832 2.57930 2.76000 3.04500 3.07655 3.09530 3.19957 3.93439 4.18720 4.43957 4.64668 4.77897 4.81741 5.04417 5.16784 5.22281 5.27445 5.38890 5.57875 5.78582 5.91580 5.97643 6.04604 6.11625 6.44194 6.45392 6.57300 6.66995 6.74072 6.95159 6.96982 7.13788 7.14532 7.32464 7.52004 7.65459 7.71224 7.99565 8.20370 8.64146 8.89791 10.10540 10.30901 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.035071 B = 0.003613 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.177935 B = 7748.220934 C = 8531.253362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.416 5.416 3 N -0.263 5.263 4 C 0.074 3.926 5 C -0.179 4.179 6 C -0.037 4.037 7 C -0.056 4.056 8 C 0.006 3.994 9 C -0.307 4.307 10 C 0.125 3.875 11 N -0.484 5.484 12 C 0.256 3.744 13 C -0.433 4.433 14 H 0.083 0.917 15 C 0.069 3.931 16 N -0.716 5.716 17 Si 0.907 3.093 18 H -0.265 1.265 19 H -0.277 1.277 20 H -0.265 1.265 21 C -0.258 4.258 22 C -0.054 4.054 23 C -0.147 4.147 24 C 0.118 3.882 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.195 0.805 29 H 0.132 0.868 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.273 0.727 33 H 0.102 0.898 34 H 0.135 0.865 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.054 10.264 -0.066 14.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.206 5.206 3 N -0.075 5.075 4 C -0.124 4.124 5 C -0.187 4.187 6 C -0.058 4.058 7 C -0.058 4.058 8 C 0.000 4.000 9 C -0.330 4.330 10 C -0.040 4.040 11 N -0.197 5.197 12 C 0.131 3.869 13 C -0.464 4.464 14 H 0.101 0.899 15 C -0.156 4.156 16 N -0.337 5.337 17 Si 0.731 3.269 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.189 1.189 21 C -0.281 4.281 22 C -0.075 4.075 23 C -0.169 4.169 24 C 0.005 3.995 25 H 0.084 0.916 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.212 0.788 29 H 0.150 0.850 30 H 0.115 0.885 31 H 0.137 0.863 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.153 0.847 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.194 10.540 -0.067 14.664 hybrid contribution -0.359 -0.763 0.015 0.844 sum -10.553 9.777 -0.052 14.386 Atomic orbital electron populations 1.21663 0.74607 1.03879 1.02661 1.48034 1.05541 1.01191 1.65834 1.76475 1.02771 1.09181 1.19052 1.25048 0.94534 0.93250 0.99562 1.19839 0.92988 0.93141 1.12691 1.20725 0.97839 0.91104 0.96134 1.18806 0.92936 0.92456 1.01573 1.18499 0.91459 0.91979 0.98047 1.21324 0.92849 0.98553 1.20260 1.22452 0.97390 0.90071 0.94086 1.68719 1.21096 1.13031 1.16862 1.18528 0.86577 0.93432 0.88318 1.19582 0.94037 0.89582 1.43244 0.89900 1.26059 0.94793 1.01146 0.93607 1.70122 0.99061 1.35990 1.28528 0.86402 0.78687 0.81923 0.79884 1.18930 1.20220 1.18935 1.21827 0.98950 0.92148 1.15167 1.20939 0.91450 0.99837 0.95253 1.19647 0.99667 0.88631 1.08949 1.18827 0.90663 0.89383 1.00628 0.91597 0.89815 0.89972 0.78824 0.84977 0.88466 0.86324 0.91547 0.88012 0.84721 0.86098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.01 11.39 59.85 0.68 1.69 16 2 N -0.42 -5.66 4.05 -65.42 -0.26 -5.92 16 3 N -0.26 -3.72 12.40 31.88 0.40 -3.32 16 4 C 0.07 0.97 12.29 -15.12 -0.19 0.78 16 5 C -0.18 -2.75 6.35 -105.22 -0.67 -3.42 16 6 C -0.04 -0.61 9.50 -38.88 -0.37 -0.98 16 7 C -0.06 -1.03 5.87 -104.91 -0.62 -1.65 16 8 C 0.01 0.14 5.91 -104.64 -0.62 -0.48 16 9 C -0.31 -6.67 9.51 -38.81 -0.37 -7.04 16 10 C 0.13 2.98 11.17 -17.61 -0.20 2.79 16 11 N -0.48 -13.22 7.85 -11.21 -0.09 -13.31 16 12 C 0.26 6.89 6.55 -85.03 -0.56 6.33 16 13 C -0.43 -11.41 9.14 -37.70 -0.34 -11.75 16 14 H 0.08 2.02 7.85 -52.49 -0.41 1.61 16 15 C 0.07 1.75 5.50 -17.35 -0.10 1.65 16 16 N -0.72 -18.94 11.46 55.55 0.64 -18.30 16 17 Si 0.91 18.33 29.56 -169.99 -5.02 13.31 16 18 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 19 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 21 C -0.26 -6.14 9.22 -38.34 -0.35 -6.49 16 22 C -0.05 -0.88 9.36 -39.60 -0.37 -1.25 16 23 C -0.15 -2.10 9.92 -39.84 -0.40 -2.49 16 24 C 0.12 1.78 6.87 -84.11 -0.58 1.21 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 28 H 0.20 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.13 1.97 6.26 -52.49 -0.33 1.64 16 30 H 0.10 1.81 6.31 -52.49 -0.33 1.48 16 31 H 0.12 2.50 8.06 -52.48 -0.42 2.08 16 32 H 0.27 6.56 8.29 -40.82 -0.34 6.22 16 33 H 0.10 2.19 6.30 -52.49 -0.33 1.86 16 34 H 0.14 2.08 6.25 -52.49 -0.33 1.75 16 35 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 305.01 15.07 4.60 4.60 Total: -1.00 -31.30 305.01 -8.18 -39.48 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -3.40 Total: 4.59 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -5.04 Total: -21.12 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.68 Total: -40.86 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.31 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.30 -8.18 -39.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241439805.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.033 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds