Wall clock time and date at job start Tue Mar 31 2020 01:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.39850 * 125.43771 * 2 1 4 4 C 1.30221 * 110.11123 * 180.02562 * 3 2 1 5 5 C 1.46005 * 107.75455 * 0.02562 * 4 3 2 6 6 C 1.39759 * 133.89644 * 180.27959 * 5 4 3 7 7 C 1.38598 * 119.43237 * 180.16550 * 6 5 4 8 8 C 1.48361 * 119.89161 * 179.79643 * 7 6 5 9 9 C 1.40048 * 120.82367 * 359.70035 * 8 7 6 10 10 C 1.38487 * 119.42168 * 180.02562 * 9 8 7 11 11 N 1.31491 * 121.14732 * 0.02678 * 10 9 8 12 12 C 1.33648 * 121.79926 * 359.95158 * 11 10 9 13 13 C 1.41422 * 119.78051 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00183 * 180.02562 * 13 12 11 15 15 C 1.40025 * 120.00210 * 359.97438 * 13 12 11 16 16 N 1.30740 * 119.99876 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00471 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46823 * 60.00103 * 17 15 13 19 19 H 1.48496 * 109.47439 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47091 * 300.00765 * 17 15 13 21 21 C 1.39335 * 120.82055 * 179.72725 * 8 7 6 22 22 C 1.40058 * 120.21376 * 359.51961 * 7 6 5 23 23 C 1.36305 * 120.69612 * 0.25225 * 22 7 6 24 24 C 1.37022 * 125.44189 * 180.02562 * 2 1 3 25 25 H 1.09007 * 109.46935 * 269.97247 * 1 2 3 26 26 H 1.08996 * 109.47419 * 29.96775 * 1 2 3 27 27 H 1.08999 * 109.47082 * 149.97417 * 1 2 3 28 28 H 1.07995 * 126.12393 * 179.97438 * 4 3 2 29 29 H 1.08001 * 120.27934 * 359.94379 * 6 5 4 30 30 H 1.07993 * 120.29058 * 0.02562 * 9 8 7 31 31 H 1.08003 * 119.42516 * 180.02562 * 10 9 8 32 32 H 0.96999 * 120.00039 * 179.97438 * 16 15 13 33 33 H 1.07998 * 120.58384 * 359.69607 * 21 8 7 34 34 H 1.07993 * 119.64896 * 180.27585 * 22 7 6 35 35 H 1.08005 * 119.92249 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2759 1.1394 0.0000 4 6 3.5318 0.7952 -0.0005 5 6 3.5936 -0.6635 -0.0016 6 6 4.6409 -1.5890 0.0024 7 6 4.3519 -2.9445 -0.0036 8 6 5.4557 -3.9358 -0.0040 9 6 6.7932 -3.5205 -0.0046 10 6 7.8006 -4.4708 -0.0055 11 7 7.5231 -5.7561 -0.0063 12 6 6.2642 -6.2048 -0.0053 13 6 6.0147 -7.5969 -0.0057 14 1 4.9987 -7.9634 -0.0053 15 6 7.0847 -8.5000 -0.0076 16 7 8.3146 -8.0564 -0.0085 17 14 6.7552 -10.3388 -0.0074 18 1 5.9768 -10.7023 -1.2188 19 1 8.0459 -11.0730 -0.0090 20 1 5.9806 -10.7027 1.2063 21 6 5.1873 -5.3031 -0.0043 22 6 3.0212 -3.3815 -0.0035 23 6 1.9945 -2.4850 -0.0026 24 6 2.2596 -1.1163 -0.0005 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5133 27 1 -0.3633 -0.8897 -0.5142 28 1 4.3764 1.4682 -0.0011 29 1 5.6665 -1.2508 0.0066 30 1 7.0369 -2.4685 -0.0044 31 1 8.8320 -4.1506 -0.0055 32 1 9.0558 -8.6820 -0.0095 33 1 4.1691 -5.6632 0.0007 34 1 2.8065 -4.4398 -0.0037 35 1 0.9730 -2.8358 -0.0030 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241439805.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:10 Heat of formation + Delta-G solvation = 104.993935 kcal Electronic energy + Delta-G solvation = -19791.331289 eV Core-core repulsion = 16754.722924 eV Total energy + Delta-G solvation = -3036.608365 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.20100 -40.15055 -38.14375 -35.46778 -34.46868 -33.30326 -32.04765 -31.07751 -29.79915 -27.62813 -27.33607 -24.43524 -24.19590 -22.61253 -21.91244 -21.62059 -19.26150 -18.21001 -17.60775 -17.28981 -16.49448 -16.44646 -16.16855 -15.60719 -15.18916 -15.13959 -14.56124 -14.45593 -14.30997 -14.14145 -13.84029 -13.39592 -13.10245 -12.95244 -12.87727 -12.67914 -12.52622 -12.36142 -11.88866 -11.85500 -11.46775 -11.31255 -11.04613 -10.25617 -9.55822 -9.54187 -9.45891 -8.49486 -8.25693 -6.48867 -0.04832 0.10113 0.94893 1.41339 1.42209 1.47535 1.53712 1.54625 1.61090 2.25018 2.77882 3.02019 3.48071 3.59282 3.79461 3.88810 4.01562 4.18612 4.25020 4.39453 4.41979 4.44141 4.61909 4.67177 4.69192 4.76361 4.90825 5.03921 5.07357 5.21989 5.27871 5.48508 5.52669 5.55773 5.65839 5.82449 6.00360 6.08670 6.19985 6.32726 6.60488 6.77206 6.99326 8.23888 8.49011 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.035071 B = 0.003613 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.177935 B = 7748.220934 C = 8531.253362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.418 5.418 3 N -0.278 5.278 4 C 0.081 3.919 5 C -0.199 4.199 6 C -0.028 4.028 7 C -0.091 4.091 8 C 0.012 3.988 9 C -0.301 4.301 10 C 0.104 3.896 11 N -0.525 5.525 12 C 0.225 3.775 13 C -0.473 4.473 14 H 0.090 0.910 15 C 0.024 3.976 16 N -0.759 5.759 17 Si 0.987 3.013 18 H -0.258 1.258 19 H -0.270 1.270 20 H -0.258 1.258 21 C -0.279 4.279 22 C -0.063 4.063 23 C -0.137 4.137 24 C 0.113 3.887 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.231 0.769 29 H 0.144 0.856 30 H 0.131 0.869 31 H 0.139 0.861 32 H 0.278 0.722 33 H 0.114 0.886 34 H 0.135 0.865 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.920 11.690 -0.075 16.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.207 5.207 3 N -0.090 5.090 4 C -0.116 4.116 5 C -0.207 4.207 6 C -0.048 4.048 7 C -0.093 4.093 8 C 0.006 3.994 9 C -0.324 4.324 10 C -0.060 4.060 11 N -0.239 5.239 12 C 0.100 3.900 13 C -0.504 4.504 14 H 0.108 0.892 15 C -0.197 4.197 16 N -0.381 5.381 17 Si 0.807 3.193 18 H -0.182 1.182 19 H -0.194 1.194 20 H -0.182 1.182 21 C -0.301 4.301 22 C -0.084 4.084 23 C -0.159 4.159 24 C -0.002 4.002 25 H 0.098 0.902 26 H 0.115 0.885 27 H 0.119 0.881 28 H 0.247 0.753 29 H 0.161 0.839 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.089 0.911 33 H 0.132 0.868 34 H 0.153 0.847 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.089 12.012 -0.075 17.042 hybrid contribution 0.086 -0.882 0.020 0.886 sum -12.003 11.131 -0.055 16.370 Atomic orbital electron populations 1.22052 0.72153 1.05545 1.04107 1.48456 1.06999 1.00452 1.64749 1.76482 1.03286 1.09684 1.19568 1.25632 0.95267 0.92614 0.98055 1.20095 0.92990 0.94316 1.13264 1.20797 0.98824 0.90445 0.94756 1.18699 0.92715 0.92550 1.05289 1.18858 0.92786 0.92108 0.95652 1.21687 0.92514 0.99883 1.18287 1.22901 0.99059 0.89774 0.94224 1.68649 1.21836 1.14809 1.18596 1.18972 0.87429 0.94545 0.89071 1.19965 0.94943 0.90291 1.45224 0.89238 1.26993 0.94165 1.06104 0.92487 1.70235 1.00089 1.37878 1.29933 0.85207 0.78751 0.75291 0.80093 1.18231 1.19409 1.18247 1.21977 0.98913 0.93004 1.16241 1.20984 0.91251 1.00380 0.95787 1.19864 1.00653 0.88088 1.07297 1.19101 0.91190 0.90105 0.99822 0.90220 0.88516 0.88080 0.75331 0.83868 0.85129 0.84398 0.91145 0.86804 0.84698 0.82897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.45 11.39 127.77 1.46 2.91 16 2 N -0.42 -10.03 4.05 -360.88 -1.46 -11.49 16 3 N -0.28 -7.02 12.40 -53.05 -0.66 -7.68 16 4 C 0.08 1.88 12.29 86.95 1.07 2.94 16 5 C -0.20 -5.62 6.35 -20.25 -0.13 -5.75 16 6 C -0.03 -0.86 9.50 22.72 0.22 -0.64 16 7 C -0.09 -3.27 5.87 -20.05 -0.12 -3.38 16 8 C 0.01 0.54 5.91 -19.88 -0.12 0.42 16 9 C -0.30 -13.02 9.51 22.77 0.22 -12.81 16 10 C 0.10 5.06 11.17 84.80 0.95 6.01 16 11 N -0.53 -29.87 7.85 -189.38 -1.49 -31.36 16 12 C 0.22 12.62 6.55 40.19 0.26 12.89 16 13 C -0.47 -25.94 9.14 23.49 0.21 -25.72 16 14 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 15 C 0.02 1.23 5.50 85.29 0.47 1.70 16 16 N -0.76 -41.74 11.46 21.84 0.25 -41.49 16 17 Si 0.99 38.37 29.56 68.60 2.03 40.40 16 18 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 19 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 20 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 21 C -0.28 -13.70 9.22 23.08 0.21 -13.48 16 22 C -0.06 -2.00 9.36 22.26 0.21 -1.79 16 23 C -0.14 -3.58 9.92 22.10 0.22 -3.36 16 24 C 0.11 3.09 6.87 39.26 0.27 3.36 16 25 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.10 1.07 8.12 -2.39 -0.02 1.05 16 28 H 0.23 3.27 8.06 -2.91 -0.02 3.25 16 29 H 0.14 3.94 6.26 -2.91 -0.02 3.92 16 30 H 0.13 4.64 6.31 -2.91 -0.02 4.62 16 31 H 0.14 5.90 8.06 -2.91 -0.02 5.88 16 32 H 0.28 13.83 8.29 -92.71 -0.77 13.06 16 33 H 0.11 5.09 6.30 -2.91 -0.02 5.07 16 34 H 0.14 4.13 6.25 -2.91 -0.02 4.11 16 35 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -70.31 305.01 5.20 -65.11 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 1.13 Total: 23.22 kcal Atomic # 6 Polarization: -42.10 SS G_CDS: 5.40 Total: -36.71 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -3.35 Total: -92.02 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Total: -70.31 5.20 -65.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241439805.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.106 kcal (2) G-P(sol) polarization free energy of solvation -70.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds