Wall clock time and date at job start Tue Mar 31 2020 01:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39836 * 125.42245 * 2 1 4 4 C 1.30219 * 110.12574 * 180.02562 * 3 2 1 5 5 C 1.46041 * 107.73026 * 0.02562 * 4 3 2 6 6 C 1.39662 * 133.87861 * 180.02562 * 5 4 3 7 7 C 1.39013 * 119.39900 * 179.97438 * 6 5 4 8 8 C 1.47801 * 119.92671 * 180.02562 * 7 6 5 9 9 C 1.39347 * 120.78872 * 310.00379 * 8 7 6 10 10 N 1.31650 * 120.65689 * 180.02562 * 9 8 7 11 11 C 1.32229 * 122.51181 * 0.02562 * 10 9 8 12 12 C 1.36459 * 121.51180 * 0.02562 * 11 10 9 13 13 C 1.41133 * 119.11170 * 359.68567 * 12 11 10 14 14 C 1.40902 * 121.10904 * 180.31548 * 13 12 11 15 15 H 1.07996 * 119.99368 * 154.74803 * 14 13 12 16 16 C 1.40156 * 120.00115 * 334.75084 * 14 13 12 17 17 N 1.30702 * 119.99861 * 344.75829 * 16 14 13 18 18 Si 1.86793 * 120.00078 * 164.76072 * 16 14 13 19 19 H 1.48499 * 109.47479 * 94.73921 * 18 16 14 20 20 H 1.48507 * 109.47158 * 214.74132 * 18 16 14 21 21 H 1.48507 * 109.47144 * 334.73806 * 18 16 14 22 22 C 1.40343 * 120.14661 * 359.97438 * 7 6 5 23 23 C 1.36189 * 120.67130 * 0.04023 * 22 7 6 24 24 C 1.36945 * 125.42817 * 180.02562 * 2 1 3 25 25 H 1.08994 * 109.47732 * 89.97310 * 1 2 3 26 26 H 1.09007 * 109.46464 * 209.96711 * 1 2 3 27 27 H 1.09001 * 109.47183 * 329.96082 * 1 2 3 28 28 H 1.08000 * 126.13689 * 180.02562 * 4 3 2 29 29 H 1.07998 * 120.29757 * 359.70603 * 6 5 4 30 30 H 1.08004 * 119.66923 * 359.97438 * 9 8 7 31 31 H 1.07992 * 119.24191 * 180.02562 * 11 10 9 32 32 H 1.08000 * 120.43864 * 179.97438 * 12 11 10 33 33 H 0.97000 * 120.00166 * 179.97438 * 17 16 14 34 34 H 1.07998 * 119.66055 * 180.02562 * 22 7 6 35 35 H 1.07998 * 119.89344 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2755 1.1395 0.0000 4 6 3.5316 0.7960 -0.0005 5 6 3.5936 -0.6631 -0.0016 6 6 4.6405 -1.5875 -0.0020 7 6 4.3504 -2.9471 -0.0025 8 6 5.4492 -3.9355 -0.0024 9 6 6.4945 -3.8402 -0.9190 10 7 7.4717 -4.7224 -0.9169 11 6 7.5172 -5.7305 -0.0624 12 6 6.5431 -5.9154 0.8751 13 6 5.4669 -5.0044 0.9359 14 6 4.4417 -5.1515 1.8913 15 1 3.8730 -4.2904 2.2098 16 6 4.1602 -6.4151 2.4282 17 7 4.6235 -7.4901 1.8469 18 14 3.1228 -6.5628 3.9746 19 1 1.7044 -6.7920 3.5992 20 1 3.6097 -7.7045 4.7901 21 1 3.2297 -5.3095 4.7640 22 6 3.0164 -3.3831 -0.0020 23 6 1.9921 -2.4855 -0.0018 24 6 2.2589 -1.1159 -0.0005 25 1 -0.3634 0.0005 -1.0276 26 1 -0.3632 -0.8904 0.5134 27 1 -0.3633 0.8896 0.5144 28 1 4.3760 1.4693 -0.0003 29 1 5.6661 -1.2492 -0.0064 30 1 6.5025 -3.0350 -1.6388 31 1 8.3444 -6.4233 -0.1076 32 1 6.5975 -6.7451 1.5643 33 1 4.4290 -8.3647 2.2187 34 1 2.8000 -4.4412 -0.0019 35 1 0.9702 -2.8350 -0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241440159.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:22 Heat of formation + Delta-G solvation = 109.560044 kcal Electronic energy + Delta-G solvation = -20438.880790 eV Core-core repulsion = 17402.470427 eV Total energy + Delta-G solvation = -3036.410364 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.80352 -38.55130 -36.49393 -34.24742 -33.23089 -31.56402 -30.33417 -29.55257 -28.16541 -26.42861 -25.71880 -22.95026 -22.04363 -21.41358 -20.36121 -20.10100 -17.67582 -16.76444 -16.30460 -15.57934 -15.24065 -14.94716 -14.50222 -14.24554 -14.05105 -13.61596 -13.12263 -12.85586 -12.79393 -12.70035 -12.46712 -12.23329 -11.69335 -11.53043 -11.32990 -11.26770 -10.91722 -10.68204 -10.45680 -10.36742 -9.86916 -9.67085 -9.49820 -8.31056 -8.09942 -7.99982 -7.77590 -7.13070 -6.86942 -4.67665 1.42720 1.86785 2.65461 2.68471 2.80582 2.87633 2.95449 3.00496 3.17570 3.76087 4.36887 4.54707 4.66487 4.96027 5.08151 5.22321 5.39696 5.45201 5.55049 5.60868 5.75321 5.83074 5.94652 6.13123 6.27053 6.45654 6.50371 6.74124 6.80185 6.83276 6.96444 7.02061 7.24752 7.27331 7.33870 7.45712 7.52528 7.79384 7.91999 8.01912 8.36057 8.61410 8.65537 9.57312 9.92469 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015794 B = 0.006203 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.388770 B = 4512.960592 C = 5923.955706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.418 5.418 3 N -0.269 5.269 4 C 0.069 3.931 5 C -0.177 4.177 6 C -0.061 4.061 7 C -0.011 4.011 8 C -0.228 4.228 9 C 0.127 3.873 10 N -0.578 5.578 11 C 0.081 3.919 12 C -0.208 4.208 13 C 0.145 3.855 14 C -0.442 4.442 15 H 0.087 0.913 16 C 0.078 3.922 17 N -0.779 5.779 18 Si 0.907 3.093 19 H -0.268 1.268 20 H -0.273 1.273 21 H -0.258 1.258 22 C -0.037 4.037 23 C -0.154 4.154 24 C 0.112 3.888 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.191 0.809 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.285 0.715 34 H 0.136 0.864 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.368 7.300 -0.298 9.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.208 5.208 3 N -0.081 5.081 4 C -0.128 4.128 5 C -0.185 4.185 6 C -0.081 4.081 7 C -0.013 4.013 8 C -0.234 4.234 9 C -0.031 4.031 10 N -0.292 5.292 11 C -0.067 4.067 12 C -0.230 4.230 13 C 0.137 3.863 14 C -0.472 4.472 15 H 0.105 0.895 16 C -0.143 4.143 17 N -0.403 5.403 18 Si 0.731 3.269 19 H -0.193 1.193 20 H -0.198 1.198 21 H -0.182 1.182 22 C -0.058 4.058 23 C -0.176 4.176 24 C -0.001 4.001 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.208 0.792 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.144 0.856 33 H 0.096 0.904 34 H 0.154 0.846 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.677 8.059 -0.885 10.503 hybrid contribution -0.765 -1.019 1.374 1.874 sum -7.442 7.040 0.489 10.256 Atomic orbital electron populations 1.21609 0.74984 1.03672 1.02387 1.47927 1.05321 1.01299 1.66247 1.76409 1.02828 1.09365 1.19547 1.24985 0.94396 0.93456 1.00013 1.19765 0.93050 0.92826 1.12839 1.20729 0.97149 0.91222 0.99033 1.18443 0.92672 0.91465 0.98718 1.19469 0.98556 1.02427 1.02928 1.22113 0.89525 0.95812 0.95644 1.67311 1.27485 1.06384 1.28020 1.21718 0.97426 0.94770 0.92806 1.21916 0.95291 1.03369 1.02388 1.17740 0.91121 0.88546 0.88925 1.19596 1.14697 0.94271 1.18611 0.89542 1.26015 0.95469 0.95320 0.97470 1.69746 1.35513 0.99403 1.35679 0.86292 0.79997 0.79395 0.81234 1.19255 1.19793 1.18152 1.21046 0.91403 0.99843 0.93484 1.19652 0.99571 0.88605 1.09810 1.18806 0.90554 0.89252 1.01463 0.91856 0.90095 0.90079 0.79198 0.85957 0.86076 0.86482 0.85637 0.90378 0.84606 0.86655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.25 11.39 59.85 0.68 1.93 16 2 N -0.42 -6.49 4.04 -65.38 -0.26 -6.75 16 3 N -0.27 -4.28 12.40 31.89 0.40 -3.89 16 4 C 0.07 1.03 12.29 -15.11 -0.19 0.84 16 5 C -0.18 -3.07 6.35 -105.22 -0.67 -3.74 16 6 C -0.06 -1.10 9.59 -38.76 -0.37 -1.47 16 7 C -0.01 -0.22 4.99 -104.91 -0.52 -0.74 16 8 C -0.23 -5.21 5.53 -104.04 -0.58 -5.79 16 9 C 0.13 2.85 10.69 -17.22 -0.18 2.67 16 10 N -0.58 -13.66 10.32 -13.36 -0.14 -13.80 16 11 C 0.08 1.88 11.09 -18.02 -0.20 1.68 16 12 C -0.21 -5.10 8.72 -39.13 -0.34 -5.44 16 13 C 0.14 3.57 5.59 -106.25 -0.59 2.98 16 14 C -0.44 -10.62 7.28 -37.85 -0.28 -10.89 16 15 H 0.09 2.06 6.71 -52.49 -0.35 1.71 16 16 C 0.08 1.79 5.22 -17.31 -0.09 1.70 16 17 N -0.78 -18.40 10.92 55.56 0.61 -17.80 16 18 Si 0.91 17.35 29.59 -169.99 -5.03 12.32 16 19 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 20 H -0.27 -5.13 7.11 56.52 0.40 -4.72 16 21 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 22 C -0.04 -0.71 7.99 -39.53 -0.32 -1.03 16 23 C -0.15 -2.61 9.91 -39.83 -0.39 -3.01 16 24 C 0.11 1.93 6.87 -84.07 -0.58 1.35 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.76 8.12 -51.92 -0.42 0.33 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.19 2.06 8.06 -52.49 -0.42 1.64 16 29 H 0.12 2.03 8.04 -52.49 -0.42 1.61 16 30 H 0.12 2.40 8.05 -52.48 -0.42 1.97 16 31 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 32 H 0.13 3.13 6.24 -52.49 -0.33 2.80 16 33 H 0.29 6.11 8.29 -40.82 -0.34 5.78 16 34 H 0.14 2.71 7.35 -52.49 -0.39 2.33 16 35 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -28.33 305.34 -8.02 -36.36 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -3.58 Total: 7.93 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -4.62 Total: -18.97 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.60 Total: -42.24 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.33 -8.02 -36.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241440159.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.919 kcal (2) G-P(sol) polarization free energy of solvation -28.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds