Wall clock time and date at job start Tue Mar 31 2020 01:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39836 * 125.42245 * 2 1 4 4 C 1.30219 * 110.12574 * 180.02562 * 3 2 1 5 5 C 1.46041 * 107.73026 * 0.02562 * 4 3 2 6 6 C 1.39662 * 133.87861 * 180.02562 * 5 4 3 7 7 C 1.39013 * 119.39900 * 179.97438 * 6 5 4 8 8 C 1.47801 * 119.92671 * 180.02562 * 7 6 5 9 9 C 1.39347 * 120.78872 * 310.00379 * 8 7 6 10 10 N 1.31650 * 120.65689 * 180.02562 * 9 8 7 11 11 C 1.32229 * 122.51181 * 0.02562 * 10 9 8 12 12 C 1.36459 * 121.51180 * 0.02562 * 11 10 9 13 13 C 1.41133 * 119.11170 * 359.68567 * 12 11 10 14 14 C 1.40902 * 121.10904 * 180.31548 * 13 12 11 15 15 H 1.07996 * 119.99368 * 154.74803 * 14 13 12 16 16 C 1.40156 * 120.00115 * 334.75084 * 14 13 12 17 17 N 1.30702 * 119.99861 * 344.75829 * 16 14 13 18 18 Si 1.86793 * 120.00078 * 164.76072 * 16 14 13 19 19 H 1.48499 * 109.47479 * 94.73921 * 18 16 14 20 20 H 1.48507 * 109.47158 * 214.74132 * 18 16 14 21 21 H 1.48507 * 109.47144 * 334.73806 * 18 16 14 22 22 C 1.40343 * 120.14661 * 359.97438 * 7 6 5 23 23 C 1.36189 * 120.67130 * 0.04023 * 22 7 6 24 24 C 1.36945 * 125.42817 * 180.02562 * 2 1 3 25 25 H 1.08994 * 109.47732 * 89.97310 * 1 2 3 26 26 H 1.09007 * 109.46464 * 209.96711 * 1 2 3 27 27 H 1.09001 * 109.47183 * 329.96082 * 1 2 3 28 28 H 1.08000 * 126.13689 * 180.02562 * 4 3 2 29 29 H 1.07998 * 120.29757 * 359.70603 * 6 5 4 30 30 H 1.08004 * 119.66923 * 359.97438 * 9 8 7 31 31 H 1.07992 * 119.24191 * 180.02562 * 11 10 9 32 32 H 1.08000 * 120.43864 * 179.97438 * 12 11 10 33 33 H 0.97000 * 120.00166 * 179.97438 * 17 16 14 34 34 H 1.07998 * 119.66055 * 180.02562 * 22 7 6 35 35 H 1.07998 * 119.89344 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2755 1.1395 0.0000 4 6 3.5316 0.7960 -0.0005 5 6 3.5936 -0.6631 -0.0016 6 6 4.6405 -1.5875 -0.0020 7 6 4.3504 -2.9471 -0.0025 8 6 5.4492 -3.9355 -0.0024 9 6 6.4945 -3.8402 -0.9190 10 7 7.4717 -4.7224 -0.9169 11 6 7.5172 -5.7305 -0.0624 12 6 6.5431 -5.9154 0.8751 13 6 5.4669 -5.0044 0.9359 14 6 4.4417 -5.1515 1.8913 15 1 3.8730 -4.2904 2.2098 16 6 4.1602 -6.4151 2.4282 17 7 4.6235 -7.4901 1.8469 18 14 3.1228 -6.5628 3.9746 19 1 1.7044 -6.7920 3.5992 20 1 3.6097 -7.7045 4.7901 21 1 3.2297 -5.3095 4.7640 22 6 3.0164 -3.3831 -0.0020 23 6 1.9921 -2.4855 -0.0018 24 6 2.2589 -1.1159 -0.0005 25 1 -0.3634 0.0005 -1.0276 26 1 -0.3632 -0.8904 0.5134 27 1 -0.3633 0.8896 0.5144 28 1 4.3760 1.4693 -0.0003 29 1 5.6661 -1.2492 -0.0064 30 1 6.5025 -3.0350 -1.6388 31 1 8.3444 -6.4233 -0.1076 32 1 6.5975 -6.7451 1.5643 33 1 4.4290 -8.3647 2.2187 34 1 2.8000 -4.4412 -0.0019 35 1 0.9702 -2.8350 -0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241440159.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:21 Heat of formation + Delta-G solvation = 94.951429 kcal Electronic energy + Delta-G solvation = -20439.514268 eV Core-core repulsion = 17402.470427 eV Total energy + Delta-G solvation = -3037.043841 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.06676 -40.26977 -37.92422 -36.01052 -34.37350 -33.15739 -32.02906 -30.95054 -29.64062 -27.95212 -27.08600 -24.42648 -23.57695 -23.08680 -21.64102 -21.55218 -19.45088 -17.98116 -17.76059 -17.25058 -16.57455 -16.34514 -16.15420 -15.85888 -15.28167 -15.00650 -14.52576 -14.34443 -14.26129 -14.08405 -13.80248 -13.47994 -13.25722 -13.12333 -12.93449 -12.77695 -12.39379 -12.04775 -11.96238 -11.76940 -11.57570 -11.25772 -10.89651 -9.93334 -9.88386 -9.63503 -9.37395 -8.76103 -8.40829 -6.49098 0.10005 0.36660 1.00567 1.11899 1.38496 1.49877 1.55856 1.56416 1.63106 2.16561 2.77557 2.94851 3.59134 3.69906 3.79436 3.91170 4.03636 4.21308 4.36021 4.45951 4.48876 4.54496 4.59831 4.68331 4.83085 4.96381 5.02516 5.05604 5.15162 5.28438 5.38842 5.53456 5.58759 5.62844 5.83078 5.96672 6.04888 6.20663 6.23646 6.55456 6.70134 6.81598 6.85058 7.75895 8.22312 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015794 B = 0.006203 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.388770 B = 4512.960592 C = 5923.955706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.420 5.420 3 N -0.281 5.281 4 C 0.077 3.923 5 C -0.194 4.194 6 C -0.052 4.052 7 C -0.040 4.040 8 C -0.227 4.227 9 C 0.117 3.883 10 N -0.590 5.590 11 C 0.075 3.925 12 C -0.229 4.229 13 C 0.116 3.884 14 C -0.457 4.457 15 H 0.082 0.918 16 C 0.043 3.957 17 N -0.807 5.807 18 Si 0.973 3.027 19 H -0.259 1.259 20 H -0.265 1.265 21 H -0.262 1.262 22 C -0.051 4.051 23 C -0.146 4.146 24 C 0.105 3.895 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.228 0.772 29 H 0.134 0.866 30 H 0.146 0.854 31 H 0.139 0.861 32 H 0.115 0.885 33 H 0.293 0.707 34 H 0.118 0.882 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.864 8.915 0.060 11.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.209 5.209 3 N -0.093 5.093 4 C -0.120 4.120 5 C -0.202 4.202 6 C -0.072 4.072 7 C -0.043 4.043 8 C -0.232 4.232 9 C -0.040 4.040 10 N -0.305 5.305 11 C -0.073 4.073 12 C -0.252 4.252 13 C 0.108 3.892 14 C -0.487 4.487 15 H 0.100 0.900 16 C -0.175 4.175 17 N -0.432 5.432 18 Si 0.794 3.206 19 H -0.183 1.183 20 H -0.190 1.190 21 H -0.186 1.186 22 C -0.071 4.071 23 C -0.167 4.167 24 C -0.009 4.009 25 H 0.097 0.903 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.245 0.755 29 H 0.152 0.848 30 H 0.163 0.837 31 H 0.156 0.844 32 H 0.133 0.867 33 H 0.104 0.896 34 H 0.136 0.864 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.196 9.698 -0.547 12.710 hybrid contribution -0.367 -1.396 1.200 1.877 sum -8.563 8.303 0.653 11.945 Atomic orbital electron populations 1.21991 0.72494 1.05245 1.03933 1.48334 1.06794 1.00488 1.65328 1.76413 1.03296 1.09729 1.19848 1.25572 0.95173 0.92688 0.98551 1.20046 0.92956 0.94135 1.13059 1.20781 0.98138 0.90499 0.97818 1.18399 0.92379 0.91902 1.01576 1.19744 0.99216 1.02293 1.01970 1.22517 0.89274 0.96196 0.96023 1.67368 1.28153 1.06764 1.28200 1.22022 0.97775 0.95114 0.92405 1.21910 0.96238 1.03766 1.03250 1.18120 0.91606 0.89568 0.89864 1.19684 1.14966 0.94791 1.19292 0.89974 1.26750 0.96355 0.94563 0.99827 1.69784 1.36406 1.00063 1.36922 0.85303 0.78705 0.79175 0.77407 1.18298 1.18954 1.18561 1.20886 0.91761 0.99403 0.95078 1.19783 1.00230 0.88363 1.08369 1.18988 0.91231 0.89780 1.00937 0.90292 0.88582 0.88566 0.75546 0.84792 0.83660 0.84368 0.86710 0.89580 0.86399 0.83994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.91 11.39 127.77 1.45 3.36 16 2 N -0.42 -11.86 4.04 -360.77 -1.46 -13.32 16 3 N -0.28 -8.11 12.40 -53.02 -0.66 -8.77 16 4 C 0.08 2.07 12.29 86.96 1.07 3.14 16 5 C -0.19 -6.35 6.35 -20.25 -0.13 -6.48 16 6 C -0.05 -1.83 9.59 22.80 0.22 -1.61 16 7 C -0.04 -1.64 4.99 -20.05 -0.10 -1.74 16 8 C -0.23 -10.57 5.53 -19.49 -0.11 -10.68 16 9 C 0.12 5.26 10.69 84.99 0.91 6.17 16 10 N -0.59 -28.11 10.32 -196.19 -2.02 -30.13 16 11 C 0.08 3.58 11.09 84.22 0.93 4.51 16 12 C -0.23 -11.65 8.72 22.57 0.20 -11.45 16 13 C 0.12 5.93 5.59 -20.92 -0.12 5.81 16 14 C -0.46 -22.57 7.28 23.39 0.17 -22.40 16 15 H 0.08 4.01 6.71 -2.91 -0.02 3.99 16 16 C 0.04 2.01 5.22 85.33 0.45 2.45 16 17 N -0.81 -38.89 10.92 21.86 0.24 -38.65 16 18 Si 0.97 35.46 29.59 68.60 2.03 37.48 16 19 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 20 H -0.27 -9.24 7.11 99.48 0.71 -8.54 16 21 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 22 C -0.05 -1.95 7.99 22.30 0.18 -1.77 16 23 C -0.15 -4.74 9.91 22.11 0.22 -4.52 16 24 C 0.10 3.40 6.87 39.32 0.27 3.67 16 25 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.10 1.48 8.12 -2.38 -0.02 1.46 16 27 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.23 4.06 8.06 -2.91 -0.02 4.03 16 29 H 0.13 4.29 8.04 -2.91 -0.02 4.26 16 30 H 0.15 5.66 8.05 -2.91 -0.02 5.64 16 31 H 0.14 5.77 8.06 -2.91 -0.02 5.74 16 32 H 0.12 5.96 6.24 -2.91 -0.02 5.94 16 33 H 0.29 12.71 8.29 -92.71 -0.77 11.94 16 34 H 0.12 4.89 7.35 -2.91 -0.02 4.87 16 35 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -61.25 305.34 4.86 -56.40 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 1.12 Total: 28.53 kcal Atomic # 6 Polarization: -37.15 SS G_CDS: 5.61 Total: -31.54 kcal Atomic # 7 Polarization: -86.97 SS G_CDS: -3.90 Total: -90.87 kcal Atomic # 14 Polarization: 35.46 SS G_CDS: 2.03 Total: 37.48 kcal Total: -61.25 4.86 -56.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241440159.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.347 kcal (2) G-P(sol) polarization free energy of solvation -61.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds