Wall clock time and date at job start Tue Mar 31 2020 01:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39843 * 125.42275 * 2 1 4 4 C 1.30212 * 110.12321 * 180.02562 * 3 2 1 5 5 C 1.46052 * 107.73127 * 359.97438 * 4 3 2 6 6 C 1.39640 * 133.87592 * 180.02562 * 5 4 3 7 7 C 1.39045 * 119.39689 * 180.02562 * 6 5 4 8 8 C 1.47769 * 119.93086 * 179.97438 * 7 6 5 9 9 C 1.39713 * 120.65194 * 310.32721 * 8 7 6 10 10 C 1.38361 * 118.47329 * 180.26381 * 9 8 7 11 11 C 1.39079 * 119.73053 * 359.42909 * 10 9 8 12 12 N 1.31276 * 121.34708 * 0.28378 * 11 10 9 13 13 C 1.33711 * 121.63473 * 359.97438 * 12 11 10 14 14 C 1.40779 * 119.94206 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00072 * 179.97438 * 14 13 12 16 16 C 1.40129 * 119.99872 * 359.97438 * 14 13 12 17 17 N 1.30713 * 120.00153 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99880 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47242 * 60.00102 * 18 16 14 20 20 H 1.48506 * 109.47014 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47288 * 299.99992 * 18 16 14 22 22 C 1.40359 * 120.14307 * 0.25949 * 7 6 5 23 23 C 1.36189 * 120.66419 * 359.46937 * 22 7 6 24 24 C 1.36936 * 125.42249 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47083 * 89.97806 * 1 2 3 26 26 H 1.09004 * 109.46771 * 209.97837 * 1 2 3 27 27 H 1.08999 * 109.47184 * 329.97524 * 1 2 3 28 28 H 1.08002 * 126.13664 * 180.02562 * 4 3 2 29 29 H 1.08006 * 120.30165 * 0.02562 * 6 5 4 30 30 H 1.08000 * 120.76722 * 359.97438 * 9 8 7 31 31 H 1.08002 * 120.13817 * 179.71419 * 10 9 8 32 32 H 1.08002 * 119.32528 * 180.25919 * 11 10 9 33 33 H 0.96996 * 119.99865 * 180.02562 * 17 16 14 34 34 H 1.08000 * 119.66860 * 179.72325 * 22 7 6 35 35 H 1.08000 * 119.88944 * 180.25821 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2755 1.1396 0.0000 4 6 3.5315 0.7960 -0.0005 5 6 3.5935 -0.6632 -0.0003 6 6 4.6402 -1.5875 -0.0002 7 6 4.3500 -2.9473 -0.0005 8 6 5.4485 -3.9357 -0.0010 9 6 6.4981 -3.8336 -0.9175 10 6 7.5003 -4.7868 -0.8814 11 6 7.4484 -5.8068 0.0626 12 7 6.4610 -5.8910 0.9235 13 6 5.4619 -5.0024 0.9338 14 6 4.4209 -5.1264 1.8734 15 1 3.6137 -4.4090 1.8828 16 6 4.4322 -6.1806 2.7965 17 7 5.4095 -7.0486 2.7854 18 14 3.0513 -6.3447 4.0438 19 1 1.7579 -6.5048 3.3321 20 1 3.2963 -7.5331 4.9000 21 1 3.0024 -5.1263 4.8913 22 6 3.0159 -3.3833 -0.0065 23 6 1.9918 -2.4855 -0.0011 24 6 2.2587 -1.1159 0.0005 25 1 -0.3633 0.0004 -1.0276 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8897 0.5142 28 1 4.3760 1.4693 -0.0003 29 1 5.6659 -1.2492 0.0001 30 1 6.5242 -3.0318 -1.6405 31 1 8.3220 -4.7364 -1.5805 32 1 8.2364 -6.5450 0.0876 33 1 5.4170 -7.7785 3.4242 34 1 2.7992 -4.4413 -0.0112 35 1 0.9698 -2.8349 -0.0015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241440343.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:55 Heat of formation + Delta-G solvation = 122.108194 kcal Electronic energy + Delta-G solvation = -20451.680889 eV Core-core repulsion = 17415.814653 eV Total energy + Delta-G solvation = -3035.866235 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.80739 -38.42600 -36.44813 -33.74182 -33.23118 -31.56902 -30.37767 -29.66272 -28.24223 -26.35965 -25.52553 -23.00326 -22.00658 -21.31561 -20.36184 -20.09469 -17.56294 -16.76712 -16.41594 -15.51757 -15.23184 -14.86037 -14.44111 -14.15702 -13.99690 -13.66381 -13.10373 -12.90143 -12.81709 -12.56507 -12.25084 -12.12068 -11.56606 -11.37630 -11.21549 -11.10932 -11.04668 -10.56903 -10.44311 -10.37824 -9.91982 -9.61243 -9.45255 -8.40253 -8.08660 -7.82412 -7.64056 -7.02138 -6.49250 -4.58022 1.41786 1.88308 2.65417 2.72581 2.84510 3.00181 3.02880 3.05249 3.18154 3.87108 4.37024 4.66256 4.67420 4.96194 5.07690 5.22158 5.39334 5.44874 5.59040 5.71274 5.84784 5.93479 6.06630 6.10380 6.18406 6.44698 6.46720 6.52703 6.75757 6.82508 6.89194 7.05515 7.20741 7.25190 7.30372 7.45578 7.60827 7.72737 7.91594 7.98585 8.16686 8.56100 8.85142 10.02403 10.20656 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015988 B = 0.006223 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.924663 B = 4498.573113 C = 5904.182273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.418 5.418 3 N -0.268 5.268 4 C 0.068 3.932 5 C -0.175 4.175 6 C -0.062 4.062 7 C -0.008 4.008 8 C -0.231 4.231 9 C -0.034 4.034 10 C -0.320 4.320 11 C 0.131 3.869 12 N -0.483 5.483 13 C 0.268 3.732 14 C -0.422 4.422 15 H 0.092 0.908 16 C 0.069 3.931 17 N -0.708 5.708 18 Si 0.903 3.097 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.263 1.263 22 C -0.047 4.047 23 C -0.152 4.152 24 C 0.110 3.890 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.191 0.809 29 H 0.121 0.879 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.275 0.725 34 H 0.136 0.864 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.147 7.613 -3.166 10.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.208 5.208 3 N -0.081 5.081 4 C -0.129 4.129 5 C -0.183 4.183 6 C -0.083 4.083 7 C -0.010 4.010 8 C -0.236 4.236 9 C -0.059 4.059 10 C -0.344 4.344 11 C -0.037 4.037 12 N -0.194 5.194 13 C 0.145 3.855 14 C -0.451 4.451 15 H 0.110 0.890 16 C -0.158 4.158 17 N -0.328 5.328 18 Si 0.726 3.274 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.188 1.188 22 C -0.067 4.067 23 C -0.174 4.174 24 C -0.003 4.003 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.208 0.792 29 H 0.139 0.861 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.136 0.864 33 H 0.086 0.914 34 H 0.154 0.846 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.152 7.723 -2.401 10.796 hybrid contribution 0.013 -0.057 -0.070 0.091 sum -7.139 7.666 -2.471 10.763 Atomic orbital electron populations 1.21608 0.74979 1.03694 1.02367 1.47917 1.05313 1.01280 1.66281 1.76405 1.02820 1.09374 1.19482 1.24981 0.94400 0.93454 1.00090 1.19773 0.93067 0.92826 1.12617 1.20705 0.97095 0.91230 0.99231 1.18477 0.92649 0.91593 0.98269 1.19279 0.98003 1.01509 1.04778 1.20901 0.92831 0.96327 0.95818 1.21224 1.03099 1.02734 1.07307 1.22606 0.95801 0.94602 0.90697 1.68770 1.01891 1.26441 1.22322 1.18517 0.90951 0.86114 0.89921 1.19741 1.06005 1.08581 1.10821 0.88963 1.26132 0.96480 0.95167 0.97981 1.70109 1.26594 1.08086 1.28038 0.86448 0.81624 0.78833 0.80461 1.18694 1.20080 1.18781 1.21054 0.91511 0.99779 0.94369 1.19641 0.99534 0.88633 1.09584 1.18784 0.90547 0.89248 1.01711 0.91872 0.90080 0.90074 0.79219 0.86070 0.88512 0.88735 0.86432 0.91366 0.84623 0.86581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.25 11.39 59.85 0.68 1.93 16 2 N -0.42 -6.52 4.04 -65.39 -0.26 -6.78 16 3 N -0.27 -4.30 12.40 31.89 0.40 -3.91 16 4 C 0.07 1.03 12.29 -15.11 -0.19 0.84 16 5 C -0.18 -3.08 6.35 -105.22 -0.67 -3.75 16 6 C -0.06 -1.15 9.59 -38.76 -0.37 -1.52 16 7 C -0.01 -0.16 5.02 -104.90 -0.53 -0.69 16 8 C -0.23 -5.36 5.53 -104.07 -0.57 -5.93 16 9 C -0.03 -0.75 9.64 -38.99 -0.38 -1.12 16 10 C -0.32 -6.93 10.10 -39.22 -0.40 -7.32 16 11 C 0.13 3.08 11.17 -17.48 -0.20 2.88 16 12 N -0.48 -12.86 7.85 -10.90 -0.09 -12.95 16 13 C 0.27 6.98 6.56 -84.71 -0.56 6.42 16 14 C -0.42 -10.67 7.95 -37.91 -0.30 -10.97 16 15 H 0.09 2.21 5.25 -52.49 -0.28 1.93 16 16 C 0.07 1.69 5.50 -17.32 -0.10 1.59 16 17 N -0.71 -18.16 11.46 55.56 0.64 -17.52 16 18 Si 0.90 18.04 29.56 -169.99 -5.02 13.02 16 19 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 22 C -0.05 -0.89 7.47 -39.52 -0.30 -1.19 16 23 C -0.15 -2.57 9.91 -39.83 -0.39 -2.97 16 24 C 0.11 1.90 6.87 -84.08 -0.58 1.33 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.19 2.09 8.06 -52.49 -0.42 1.67 16 29 H 0.12 2.07 8.04 -52.48 -0.42 1.65 16 30 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 33 H 0.27 6.41 8.29 -40.82 -0.34 6.07 16 34 H 0.14 2.63 7.24 -52.49 -0.38 2.25 16 35 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 305.48 15.07 4.60 4.60 Total: -1.00 -29.97 305.48 -8.17 -38.14 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -3.59 Total: 5.86 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -4.83 Total: -20.46 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.68 Total: -41.16 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.02 Total: 13.02 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.97 -8.17 -38.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241440343.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.244 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds