Wall clock time and date at job start Tue Mar 31 2020 01:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39843 * 125.42275 * 2 1 4 4 C 1.30212 * 110.12321 * 180.02562 * 3 2 1 5 5 C 1.46052 * 107.73127 * 359.97438 * 4 3 2 6 6 C 1.39640 * 133.87592 * 180.02562 * 5 4 3 7 7 C 1.39045 * 119.39689 * 180.02562 * 6 5 4 8 8 C 1.47769 * 119.93086 * 179.97438 * 7 6 5 9 9 C 1.39713 * 120.65194 * 310.32721 * 8 7 6 10 10 C 1.38361 * 118.47329 * 180.26381 * 9 8 7 11 11 C 1.39079 * 119.73053 * 359.42909 * 10 9 8 12 12 N 1.31276 * 121.34708 * 0.28378 * 11 10 9 13 13 C 1.33711 * 121.63473 * 359.97438 * 12 11 10 14 14 C 1.40779 * 119.94206 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00072 * 179.97438 * 14 13 12 16 16 C 1.40129 * 119.99872 * 359.97438 * 14 13 12 17 17 N 1.30713 * 120.00153 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99880 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47242 * 60.00102 * 18 16 14 20 20 H 1.48506 * 109.47014 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47288 * 299.99992 * 18 16 14 22 22 C 1.40359 * 120.14307 * 0.25949 * 7 6 5 23 23 C 1.36189 * 120.66419 * 359.46937 * 22 7 6 24 24 C 1.36936 * 125.42249 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47083 * 89.97806 * 1 2 3 26 26 H 1.09004 * 109.46771 * 209.97837 * 1 2 3 27 27 H 1.08999 * 109.47184 * 329.97524 * 1 2 3 28 28 H 1.08002 * 126.13664 * 180.02562 * 4 3 2 29 29 H 1.08006 * 120.30165 * 0.02562 * 6 5 4 30 30 H 1.08000 * 120.76722 * 359.97438 * 9 8 7 31 31 H 1.08002 * 120.13817 * 179.71419 * 10 9 8 32 32 H 1.08002 * 119.32528 * 180.25919 * 11 10 9 33 33 H 0.96996 * 119.99865 * 180.02562 * 17 16 14 34 34 H 1.08000 * 119.66860 * 179.72325 * 22 7 6 35 35 H 1.08000 * 119.88944 * 180.25821 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2755 1.1396 0.0000 4 6 3.5315 0.7960 -0.0005 5 6 3.5935 -0.6632 -0.0003 6 6 4.6402 -1.5875 -0.0002 7 6 4.3500 -2.9473 -0.0005 8 6 5.4485 -3.9357 -0.0010 9 6 6.4981 -3.8336 -0.9175 10 6 7.5003 -4.7868 -0.8814 11 6 7.4484 -5.8068 0.0626 12 7 6.4610 -5.8910 0.9235 13 6 5.4619 -5.0024 0.9338 14 6 4.4209 -5.1264 1.8734 15 1 3.6137 -4.4090 1.8828 16 6 4.4322 -6.1806 2.7965 17 7 5.4095 -7.0486 2.7854 18 14 3.0513 -6.3447 4.0438 19 1 1.7579 -6.5048 3.3321 20 1 3.2963 -7.5331 4.9000 21 1 3.0024 -5.1263 4.8913 22 6 3.0159 -3.3833 -0.0065 23 6 1.9918 -2.4855 -0.0011 24 6 2.2587 -1.1159 0.0005 25 1 -0.3633 0.0004 -1.0276 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8897 0.5142 28 1 4.3760 1.4693 -0.0003 29 1 5.6659 -1.2492 0.0001 30 1 6.5242 -3.0318 -1.6405 31 1 8.3220 -4.7364 -1.5805 32 1 8.2364 -6.5450 0.0876 33 1 5.4170 -7.7785 3.4242 34 1 2.7992 -4.4413 -0.0112 35 1 0.9698 -2.8349 -0.0015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241440343.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:54 Heat of formation + Delta-G solvation = 106.046785 kcal Electronic energy + Delta-G solvation = -20452.377364 eV Core-core repulsion = 17415.814653 eV Total energy + Delta-G solvation = -3036.562710 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.07484 -40.13620 -37.89338 -35.52819 -34.38217 -33.14700 -32.13142 -31.03375 -29.71024 -27.76333 -27.01946 -24.48014 -23.51346 -23.01337 -21.63145 -21.55868 -19.35700 -17.99257 -17.87852 -17.19483 -16.41509 -16.35716 -16.08989 -15.76478 -15.28259 -15.03980 -14.49040 -14.34987 -14.02540 -13.93261 -13.79319 -13.42580 -13.12005 -12.93521 -12.83416 -12.74794 -12.50391 -12.03713 -11.95721 -11.73612 -11.55962 -11.20942 -10.90957 -10.09425 -9.65163 -9.45633 -9.37704 -8.49277 -8.25954 -6.42602 0.08838 0.39317 1.01533 1.29342 1.39605 1.50565 1.55525 1.56050 1.61893 2.21610 2.86068 2.95891 3.59409 3.71045 3.90360 3.99418 4.12273 4.34455 4.36984 4.45487 4.46648 4.53267 4.57696 4.68457 4.80796 4.86756 4.98326 5.02190 5.16140 5.23068 5.39907 5.54051 5.63765 5.66324 5.80986 5.99847 6.04040 6.20221 6.23168 6.35284 6.69248 6.75919 7.02257 8.21962 8.44634 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015988 B = 0.006223 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.924663 B = 4498.573113 C = 5904.182273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.419 5.419 3 N -0.280 5.280 4 C 0.075 3.925 5 C -0.193 4.193 6 C -0.056 4.056 7 C -0.038 4.038 8 C -0.231 4.231 9 C -0.045 4.045 10 C -0.311 4.311 11 C 0.106 3.894 12 N -0.522 5.522 13 C 0.236 3.764 14 C -0.450 4.450 15 H 0.097 0.903 16 C 0.026 3.974 17 N -0.751 5.751 18 Si 0.973 3.027 19 H -0.252 1.252 20 H -0.269 1.269 21 H -0.264 1.264 22 C -0.060 4.060 23 C -0.143 4.143 24 C 0.103 3.897 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.228 0.772 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.279 0.721 34 H 0.123 0.877 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.575 9.593 -3.549 12.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.209 5.209 3 N -0.092 5.092 4 C -0.121 4.121 5 C -0.201 4.201 6 C -0.076 4.076 7 C -0.041 4.041 8 C -0.236 4.236 9 C -0.069 4.069 10 C -0.334 4.334 11 C -0.060 4.060 12 N -0.235 5.235 13 C 0.112 3.888 14 C -0.480 4.480 15 H 0.115 0.885 16 C -0.196 4.196 17 N -0.372 5.372 18 Si 0.793 3.207 19 H -0.176 1.176 20 H -0.193 1.193 21 H -0.188 1.188 22 C -0.080 4.080 23 C -0.164 4.164 24 C -0.011 4.011 25 H 0.098 0.902 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.244 0.756 29 H 0.149 0.851 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.089 0.911 34 H 0.141 0.859 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.584 9.721 -2.812 13.269 hybrid contribution 0.456 -0.499 -0.086 0.682 sum -8.127 9.221 -2.898 12.629 Atomic orbital electron populations 1.21999 0.72438 1.05275 1.03966 1.48329 1.06803 1.00453 1.65313 1.76407 1.03266 1.09765 1.19762 1.25559 0.95190 0.92685 0.98708 1.20051 0.93014 0.94132 1.12911 1.20748 0.98022 0.90590 0.98254 1.18463 0.92529 0.91987 1.01087 1.19588 0.99017 1.01106 1.03859 1.21271 0.92454 0.97148 0.96029 1.21563 1.03661 1.01525 1.06674 1.23013 0.95911 0.95945 0.91129 1.68696 1.03048 1.27693 1.24019 1.18961 0.91400 0.87241 0.91176 1.19999 1.06571 1.09610 1.11854 0.88487 1.26975 0.98695 0.94434 0.99506 1.70214 1.28664 1.08994 1.29345 0.85398 0.78722 0.78744 0.77836 1.17606 1.19306 1.18808 1.20951 0.91733 0.99618 0.95741 1.19808 1.00315 0.88312 1.08005 1.18987 0.91170 0.89844 1.01139 0.90228 0.88512 0.88604 0.75623 0.85101 0.85702 0.85599 0.84725 0.91057 0.85927 0.83698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.89 11.39 127.77 1.45 3.34 16 2 N -0.42 -11.86 4.04 -360.79 -1.46 -13.32 16 3 N -0.28 -8.13 12.40 -53.01 -0.66 -8.79 16 4 C 0.08 2.05 12.29 86.96 1.07 3.12 16 5 C -0.19 -6.40 6.35 -20.25 -0.13 -6.53 16 6 C -0.06 -2.00 9.59 22.80 0.22 -1.79 16 7 C -0.04 -1.58 5.02 -20.05 -0.10 -1.68 16 8 C -0.23 -10.89 5.53 -19.51 -0.11 -10.99 16 9 C -0.04 -1.91 9.64 22.66 0.22 -1.70 16 10 C -0.31 -13.24 10.10 22.50 0.23 -13.02 16 11 C 0.11 5.06 11.17 84.98 0.95 6.01 16 12 N -0.52 -28.85 7.85 -188.41 -1.48 -30.33 16 13 C 0.24 12.73 6.56 40.37 0.26 12.99 16 14 C -0.45 -23.58 7.95 23.35 0.19 -23.39 16 15 H 0.10 4.79 5.25 -2.91 -0.02 4.77 16 16 C 0.03 1.33 5.50 85.32 0.47 1.79 16 17 N -0.75 -40.01 11.46 21.86 0.25 -39.76 16 18 Si 0.97 37.59 29.56 68.60 2.03 39.61 16 19 H -0.25 -9.20 7.11 99.48 0.71 -8.50 16 20 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 21 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 22 C -0.06 -2.29 7.47 22.31 0.17 -2.12 16 23 C -0.14 -4.60 9.91 22.11 0.22 -4.38 16 24 C 0.10 3.34 6.87 39.32 0.27 3.61 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.10 1.47 8.12 -2.38 -0.02 1.45 16 27 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.23 4.13 8.06 -2.91 -0.02 4.11 16 29 H 0.13 4.31 8.04 -2.91 -0.02 4.29 16 30 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 31 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 32 H 0.14 5.70 8.06 -2.91 -0.02 5.67 16 33 H 0.28 13.50 8.29 -92.71 -0.77 12.73 16 34 H 0.12 4.92 7.24 -2.91 -0.02 4.90 16 35 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -66.37 305.48 5.17 -61.20 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 1.12 Total: 26.12 kcal Atomic # 6 Polarization: -40.10 SS G_CDS: 5.38 Total: -34.73 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -3.34 Total: -92.20 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.61 kcal Total: -66.37 5.17 -61.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241440343.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.244 kcal (2) G-P(sol) polarization free energy of solvation -66.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds