Wall clock time and date at job start Tue Mar 31 2020 01:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40026 * 125.97444 * 2 1 4 4 C 1.30226 * 109.72019 * 180.02562 * 3 2 1 5 5 C 1.41287 * 108.68790 * 0.02562 * 4 3 2 6 6 C 1.37201 * 125.97078 * 180.02562 * 2 1 3 7 7 C 1.39237 * 133.65955 * 359.95994 * 6 2 1 8 8 C 1.37768 * 120.14467 * 180.02562 * 7 6 2 9 9 C 1.38602 * 120.75714 * 0.02562 * 8 7 6 10 10 C 1.38757 * 120.39086 * 0.20187 * 9 8 7 11 11 C 1.48040 * 120.27202 * 179.69614 * 10 9 8 12 12 C 1.40034 * 119.61760 * 312.47628 * 11 10 9 13 13 C 1.38659 * 119.45392 * 179.74978 * 12 11 10 14 14 C 1.38311 * 118.70084 * 0.51005 * 13 12 11 15 15 C 1.40698 * 119.21300 * 359.73077 * 14 13 12 16 16 C 1.41365 * 119.76693 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99583 * 6.75628 * 16 15 14 18 18 C 1.39996 * 120.00506 * 186.75960 * 16 15 14 19 19 N 1.30761 * 119.99781 * 7.09295 * 18 16 15 20 20 Si 1.86802 * 120.00260 * 187.09343 * 18 16 15 21 21 H 1.48499 * 109.46822 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47052 * 119.99864 * 20 18 16 23 23 H 1.48500 * 109.47182 * 239.99820 * 20 18 16 24 24 N 1.32327 * 119.62062 * 132.74201 * 11 10 9 25 25 H 1.08992 * 109.47047 * 89.97276 * 1 2 3 26 26 H 1.09003 * 109.46869 * 209.97345 * 1 2 3 27 27 H 1.08994 * 109.47036 * 329.97065 * 1 2 3 28 28 H 1.07993 * 125.65476 * 180.02562 * 4 3 2 29 29 H 1.07998 * 119.92883 * 0.02874 * 7 6 2 30 30 H 1.07997 * 119.62305 * 180.02562 * 8 7 6 31 31 H 1.07995 * 119.80620 * 179.97438 * 9 8 7 32 32 H 1.07998 * 120.27056 * 359.97438 * 12 11 10 33 33 H 1.07993 * 120.64763 * 180.22102 * 13 12 11 34 34 H 1.08001 * 120.39402 * 179.71162 * 14 13 12 35 35 H 0.97000 * 119.99800 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2876 1.1332 0.0000 4 6 3.5378 0.7687 -0.0005 5 6 3.5978 -0.6429 -0.0015 6 6 2.2709 -1.1104 -0.0005 7 6 2.0203 -2.4800 -0.0004 8 6 3.0677 -3.3750 -0.0005 9 6 4.3803 -2.9300 -0.0001 10 6 4.6608 -1.5711 0.0045 11 6 6.0638 -1.0987 0.0117 12 6 6.9782 -1.6592 0.9120 13 6 8.2927 -1.2179 0.9122 14 6 8.6595 -0.2232 0.0239 15 6 7.6941 0.3046 -0.8530 16 6 8.0563 1.3212 -1.7660 17 1 9.0912 1.6137 -1.8657 18 6 7.0738 1.9489 -2.5410 19 7 5.8094 1.6958 -2.3239 20 14 7.5689 3.1479 -3.8851 21 1 9.0491 3.2601 -3.9276 22 1 7.0714 2.6560 -5.1950 23 1 6.9799 4.4810 -3.6008 24 7 6.4380 -0.1479 -0.8292 25 1 -0.3633 0.0005 -1.0276 26 1 -0.3633 -0.8903 0.5134 27 1 -0.3633 0.8897 0.5143 28 1 4.3877 1.4349 -0.0003 29 1 1.0026 -2.8416 -0.0003 30 1 2.8636 -4.4355 -0.0008 31 1 5.1896 -3.6451 0.0002 32 1 6.6630 -2.4315 1.5980 33 1 9.0147 -1.6393 1.5958 34 1 9.6749 0.1443 0.0039 35 1 5.1286 2.1304 -2.8610 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241449924.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:26 Heat of formation + Delta-G solvation = 124.301341 kcal Electronic energy + Delta-G solvation = -20747.704805 eV Core-core repulsion = 17711.933672 eV Total energy + Delta-G solvation = -3035.771133 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.84777 -38.25998 -36.49091 -33.72999 -33.16928 -31.31814 -30.46165 -29.31494 -28.53768 -26.22475 -25.54332 -23.14375 -21.72441 -21.35207 -20.93358 -19.45252 -17.42176 -16.64501 -16.32221 -15.24634 -15.08322 -14.80858 -14.59039 -14.21077 -13.97381 -13.69680 -13.20290 -12.76756 -12.69136 -12.36019 -12.15305 -12.04651 -11.44587 -11.24703 -11.13142 -11.07580 -10.86349 -10.76369 -10.43118 -10.23799 -9.92171 -9.57022 -9.30855 -8.34032 -8.08606 -7.71712 -7.64981 -7.12488 -6.48646 -4.53505 1.29397 1.95653 2.71592 2.86846 2.97178 3.10027 3.13553 3.17726 3.20252 3.94001 4.31526 4.72446 4.82039 5.01891 5.25131 5.32024 5.45787 5.53505 5.61878 5.70004 5.82849 5.88327 6.06540 6.12792 6.31088 6.47631 6.48816 6.70262 6.76410 6.81025 6.99358 7.07841 7.20475 7.26813 7.34001 7.51349 7.55135 7.68956 7.97282 8.19173 8.20981 8.62867 8.87261 9.98573 10.26671 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015570 B = 0.006888 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.913314 B = 4063.878279 C = 5414.701872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.423 5.423 3 N -0.283 5.283 4 C 0.126 3.874 5 C -0.146 4.146 6 C 0.122 3.878 7 C -0.163 4.163 8 C -0.067 4.067 9 C -0.163 4.163 10 C 0.081 3.919 11 C 0.168 3.832 12 C -0.294 4.294 13 C -0.059 4.059 14 C -0.270 4.270 15 C 0.256 3.744 16 C -0.431 4.431 17 H 0.084 0.916 18 C 0.073 3.927 19 N -0.714 5.714 20 Si 0.904 3.096 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.273 1.273 24 N -0.464 5.464 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.200 0.800 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.643 -5.078 3.062 9.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.211 5.211 3 N -0.095 5.095 4 C -0.069 4.069 5 C -0.155 4.155 6 C 0.007 3.993 7 C -0.186 4.186 8 C -0.088 4.088 9 C -0.183 4.183 10 C 0.077 3.923 11 C 0.023 3.977 12 C -0.318 4.318 13 C -0.083 4.083 14 C -0.294 4.294 15 C 0.131 3.869 16 C -0.462 4.462 17 H 0.102 0.898 18 C -0.152 4.152 19 N -0.335 5.335 20 Si 0.729 3.271 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.199 1.199 24 N -0.176 5.176 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.217 0.783 29 H 0.133 0.867 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.455 -3.563 2.390 10.383 hybrid contribution 1.301 -0.551 -0.103 1.416 sum -8.154 -4.113 2.287 9.415 Atomic orbital electron populations 1.21539 0.75086 1.03375 1.02262 1.48212 1.05228 1.01775 1.65932 1.76761 1.02404 1.08426 1.21918 1.24142 0.94181 0.94291 0.94323 1.18809 0.91730 0.93882 1.11036 1.18826 0.90728 0.89564 1.00210 1.19838 0.99124 0.88962 1.10633 1.20732 0.91962 0.98604 0.97517 1.20890 0.96410 0.94329 1.06716 1.18346 0.90915 0.91486 0.91525 1.19710 0.90914 0.93515 0.93545 1.21168 0.94655 1.08501 1.07471 1.20782 0.94962 0.95742 0.96816 1.21807 1.00160 1.04313 1.03070 1.18524 0.86717 0.91209 0.90432 1.19593 0.95017 1.14691 1.16892 0.89762 1.25999 0.94645 0.96896 0.97685 1.70014 1.00419 1.31049 1.32021 0.86320 0.80074 0.80036 0.80699 1.18471 1.19877 1.19879 1.68868 1.17638 1.09942 1.21197 0.91972 0.90480 0.90028 0.78325 0.86685 0.85836 0.85752 0.88464 0.88417 0.88257 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.43 11.45 59.85 0.69 2.11 16 2 N -0.42 -7.52 4.07 -65.48 -0.27 -7.79 16 3 N -0.28 -5.81 12.45 30.82 0.38 -5.42 16 4 C 0.13 2.77 11.56 -17.07 -0.20 2.57 16 5 C -0.15 -3.14 5.96 -106.72 -0.64 -3.78 16 6 C 0.12 2.27 6.88 -84.17 -0.58 1.69 16 7 C -0.16 -2.51 10.01 -39.38 -0.39 -2.91 16 8 C -0.07 -1.01 10.00 -39.62 -0.40 -1.40 16 9 C -0.16 -2.90 9.41 -39.26 -0.37 -3.27 16 10 C 0.08 1.74 5.64 -104.59 -0.59 1.15 16 11 C 0.17 4.00 6.24 -82.96 -0.52 3.49 16 12 C -0.29 -6.50 9.48 -38.75 -0.37 -6.86 16 13 C -0.06 -1.28 10.15 -39.40 -0.40 -1.68 16 14 C -0.27 -6.44 9.83 -38.63 -0.38 -6.82 16 15 C 0.26 6.76 6.52 -85.01 -0.55 6.21 16 16 C -0.43 -11.13 9.13 -37.73 -0.34 -11.47 16 17 H 0.08 2.05 7.86 -52.49 -0.41 1.64 16 18 C 0.07 1.81 5.47 -17.35 -0.09 1.71 16 19 N -0.71 -18.21 11.50 55.55 0.64 -17.57 16 20 Si 0.90 18.40 29.57 -169.99 -5.03 13.37 16 21 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 24 N -0.46 -12.21 7.38 -7.70 -0.06 -12.26 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.20 4.70 7.88 -52.49 -0.41 4.29 16 29 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.12 2.03 7.97 -52.49 -0.42 1.61 16 32 H 0.10 1.91 7.98 -52.49 -0.42 1.49 16 33 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 35 H 0.27 6.54 8.29 -40.82 -0.34 6.20 16 LS Contribution 310.64 15.07 4.68 4.68 Total: -1.00 -29.50 310.64 -8.54 -38.04 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -3.76 Total: 6.21 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -5.14 Total: -19.26 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.70 Total: -43.05 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.50 -8.54 -38.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241449924.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.344 kcal (2) G-P(sol) polarization free energy of solvation -29.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds