Wall clock time and date at job start Tue Mar 31 2020 01:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40026 * 125.97444 * 2 1 4 4 C 1.30226 * 109.72019 * 180.02562 * 3 2 1 5 5 C 1.41287 * 108.68790 * 0.02562 * 4 3 2 6 6 C 1.37201 * 125.97078 * 180.02562 * 2 1 3 7 7 C 1.39237 * 133.65955 * 359.95994 * 6 2 1 8 8 C 1.37768 * 120.14467 * 180.02562 * 7 6 2 9 9 C 1.38602 * 120.75714 * 0.02562 * 8 7 6 10 10 C 1.38757 * 120.39086 * 0.20187 * 9 8 7 11 11 C 1.48040 * 120.27202 * 179.69614 * 10 9 8 12 12 C 1.40034 * 119.61760 * 312.47628 * 11 10 9 13 13 C 1.38659 * 119.45392 * 179.74978 * 12 11 10 14 14 C 1.38311 * 118.70084 * 0.51005 * 13 12 11 15 15 C 1.40698 * 119.21300 * 359.73077 * 14 13 12 16 16 C 1.41365 * 119.76693 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99583 * 6.75628 * 16 15 14 18 18 C 1.39996 * 120.00506 * 186.75960 * 16 15 14 19 19 N 1.30761 * 119.99781 * 7.09295 * 18 16 15 20 20 Si 1.86802 * 120.00260 * 187.09343 * 18 16 15 21 21 H 1.48499 * 109.46822 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47052 * 119.99864 * 20 18 16 23 23 H 1.48500 * 109.47182 * 239.99820 * 20 18 16 24 24 N 1.32327 * 119.62062 * 132.74201 * 11 10 9 25 25 H 1.08992 * 109.47047 * 89.97276 * 1 2 3 26 26 H 1.09003 * 109.46869 * 209.97345 * 1 2 3 27 27 H 1.08994 * 109.47036 * 329.97065 * 1 2 3 28 28 H 1.07993 * 125.65476 * 180.02562 * 4 3 2 29 29 H 1.07998 * 119.92883 * 0.02874 * 7 6 2 30 30 H 1.07997 * 119.62305 * 180.02562 * 8 7 6 31 31 H 1.07995 * 119.80620 * 179.97438 * 9 8 7 32 32 H 1.07998 * 120.27056 * 359.97438 * 12 11 10 33 33 H 1.07993 * 120.64763 * 180.22102 * 13 12 11 34 34 H 1.08001 * 120.39402 * 179.71162 * 14 13 12 35 35 H 0.97000 * 119.99800 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2876 1.1332 0.0000 4 6 3.5378 0.7687 -0.0005 5 6 3.5978 -0.6429 -0.0015 6 6 2.2709 -1.1104 -0.0005 7 6 2.0203 -2.4800 -0.0004 8 6 3.0677 -3.3750 -0.0005 9 6 4.3803 -2.9300 -0.0001 10 6 4.6608 -1.5711 0.0045 11 6 6.0638 -1.0987 0.0117 12 6 6.9782 -1.6592 0.9120 13 6 8.2927 -1.2179 0.9122 14 6 8.6595 -0.2232 0.0239 15 6 7.6941 0.3046 -0.8530 16 6 8.0563 1.3212 -1.7660 17 1 9.0912 1.6137 -1.8657 18 6 7.0738 1.9489 -2.5410 19 7 5.8094 1.6958 -2.3239 20 14 7.5689 3.1479 -3.8851 21 1 9.0491 3.2601 -3.9276 22 1 7.0714 2.6560 -5.1950 23 1 6.9799 4.4810 -3.6008 24 7 6.4380 -0.1479 -0.8292 25 1 -0.3633 0.0005 -1.0276 26 1 -0.3633 -0.8903 0.5134 27 1 -0.3633 0.8897 0.5143 28 1 4.3877 1.4349 -0.0003 29 1 1.0026 -2.8416 -0.0003 30 1 2.8636 -4.4355 -0.0008 31 1 5.1896 -3.6451 0.0002 32 1 6.6630 -2.4315 1.5980 33 1 9.0147 -1.6393 1.5958 34 1 9.6749 0.1443 0.0039 35 1 5.1286 2.1304 -2.8610 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241449924.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:26 Heat of formation + Delta-G solvation = 107.981176 kcal Electronic energy + Delta-G solvation = -20748.412500 eV Core-core repulsion = 17711.933672 eV Total energy + Delta-G solvation = -3036.478829 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.26704 -40.01845 -37.89586 -35.51738 -34.55856 -32.86413 -32.25893 -30.70761 -30.12764 -27.59487 -27.18996 -24.68513 -23.36015 -22.89015 -22.51832 -20.95653 -19.22811 -18.09257 -17.69267 -16.92721 -16.39647 -16.38231 -16.15233 -15.86742 -15.54204 -15.16554 -14.61098 -14.31853 -14.07654 -13.77548 -13.66949 -13.40803 -12.94747 -12.79640 -12.70270 -12.66166 -12.44842 -12.35747 -12.00835 -11.76143 -11.61310 -11.23026 -10.87773 -10.09308 -9.64665 -9.47259 -9.35753 -8.57284 -8.29559 -6.46094 -0.14783 0.57195 0.97434 1.21236 1.39981 1.51032 1.54195 1.62195 1.70362 2.22534 2.78849 3.00172 3.54448 3.70887 3.89091 4.04423 4.17666 4.30401 4.40410 4.42010 4.47304 4.57482 4.67335 4.75155 4.81902 4.87919 4.94070 5.00901 5.15534 5.21696 5.41661 5.49557 5.64732 5.65845 5.78077 5.87245 5.97485 6.18553 6.27838 6.29855 6.71330 6.77202 6.98132 8.16338 8.44490 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015570 B = 0.006888 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.913314 B = 4063.878279 C = 5414.701872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.417 5.417 3 N -0.296 5.296 4 C 0.100 3.900 5 C -0.178 4.178 6 C 0.110 3.890 7 C -0.145 4.145 8 C -0.057 4.057 9 C -0.156 4.156 10 C 0.036 3.964 11 C 0.153 3.847 12 C -0.294 4.294 13 C -0.056 4.056 14 C -0.293 4.293 15 C 0.224 3.776 16 C -0.467 4.467 17 H 0.087 0.913 18 C 0.031 3.969 19 N -0.744 5.744 20 Si 0.978 3.022 21 H -0.254 1.254 22 H -0.272 1.272 23 H -0.268 1.268 24 N -0.493 5.493 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.090 0.910 28 H 0.167 0.833 29 H 0.162 0.838 30 H 0.175 0.825 31 H 0.137 0.863 32 H 0.125 0.875 33 H 0.136 0.864 34 H 0.109 0.891 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.623 -7.556 3.352 12.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.206 5.206 3 N -0.110 5.110 4 C -0.094 4.094 5 C -0.186 4.186 6 C -0.006 4.006 7 C -0.167 4.167 8 C -0.077 4.077 9 C -0.176 4.176 10 C 0.032 3.968 11 C 0.008 3.992 12 C -0.317 4.317 13 C -0.080 4.080 14 C -0.316 4.316 15 C 0.098 3.902 16 C -0.498 4.498 17 H 0.105 0.895 18 C -0.191 4.191 19 N -0.365 5.365 20 Si 0.800 3.200 21 H -0.177 1.177 22 H -0.197 1.197 23 H -0.193 1.193 24 N -0.206 5.206 25 H 0.095 0.905 26 H 0.131 0.869 27 H 0.109 0.891 28 H 0.184 0.816 29 H 0.180 0.820 30 H 0.192 0.808 31 H 0.155 0.845 32 H 0.143 0.857 33 H 0.154 0.846 34 H 0.127 0.873 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.440 -6.051 2.703 13.221 hybrid contribution 1.764 0.059 -0.079 1.767 sum -9.676 -5.993 2.624 11.680 Atomic orbital electron populations 1.22041 0.71679 1.05687 1.03953 1.48621 1.06869 1.00687 1.64411 1.76612 1.02278 1.10329 1.21829 1.23681 0.94017 0.94883 0.96860 1.19013 0.93597 0.93493 1.12512 1.19211 0.89576 0.91109 1.00684 1.20419 1.01649 0.87112 1.07498 1.21261 0.90202 1.01057 0.95228 1.21197 0.98583 0.92812 1.05056 1.18481 0.89641 0.93225 0.95457 1.20309 0.92823 0.92859 0.93161 1.21558 0.94591 1.08532 1.06993 1.21197 0.95734 0.94669 0.96423 1.21995 1.00348 1.05487 1.03723 1.18996 0.87685 0.92043 0.91431 1.19881 0.95562 1.15909 1.18453 0.89496 1.26823 0.94371 0.98334 0.99595 1.70162 1.01284 1.32213 1.32843 0.85213 0.79912 0.77578 0.77347 1.17688 1.19731 1.19338 1.68848 1.17767 1.11254 1.22689 0.90494 0.86904 0.89094 0.81600 0.82045 0.80797 0.84542 0.85708 0.84621 0.87270 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.19 11.45 127.77 1.46 3.66 16 2 N -0.42 -14.24 4.07 -361.08 -1.47 -15.71 16 3 N -0.30 -12.56 12.45 -56.40 -0.70 -13.26 16 4 C 0.10 4.68 11.56 85.68 0.99 5.67 16 5 C -0.18 -7.81 5.96 -21.23 -0.13 -7.94 16 6 C 0.11 3.91 6.88 39.14 0.27 4.18 16 7 C -0.14 -3.79 10.01 22.40 0.22 -3.56 16 8 C -0.06 -1.43 10.00 22.25 0.22 -1.21 16 9 C -0.16 -5.21 9.41 22.48 0.21 -5.00 16 10 C 0.04 1.54 5.64 -19.84 -0.11 1.43 16 11 C 0.15 7.52 6.24 42.11 0.26 7.78 16 12 C -0.29 -12.93 9.48 22.81 0.22 -12.72 16 13 C -0.06 -2.44 10.15 22.39 0.23 -2.21 16 14 C -0.29 -14.40 9.83 22.89 0.23 -14.18 16 15 C 0.22 12.48 6.52 40.26 0.26 12.75 16 16 C -0.47 -25.48 9.13 23.47 0.21 -25.27 16 17 H 0.09 4.47 7.86 -2.91 -0.02 4.44 16 18 C 0.03 1.61 5.47 85.28 0.47 2.08 16 19 N -0.74 -40.40 11.50 21.83 0.25 -40.15 16 20 Si 0.98 39.34 29.57 68.60 2.03 41.37 16 21 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 23 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 24 N -0.49 -27.41 7.38 -178.29 -1.32 -28.73 16 25 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 26 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.17 8.75 7.88 -2.91 -0.02 8.73 16 29 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 30 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 31 H 0.14 4.10 7.97 -2.91 -0.02 4.08 16 32 H 0.12 4.68 7.98 -2.91 -0.02 4.66 16 33 H 0.14 4.73 8.06 -2.91 -0.02 4.70 16 34 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 35 H 0.27 13.93 8.29 -92.71 -0.77 13.17 16 Total: -1.00 -70.10 310.64 4.91 -65.19 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 1.11 Total: 25.83 kcal Atomic # 6 Polarization: -39.55 SS G_CDS: 5.02 Total: -34.53 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -3.24 Total: -97.86 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -70.10 4.91 -65.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241449924.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.166 kcal (2) G-P(sol) polarization free energy of solvation -70.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds