Wall clock time and date at job start Tue Mar 31 2020 01:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40025 * 125.96672 * 2 1 4 4 C 1.30213 * 109.72109 * 180.02562 * 3 2 1 5 5 C 1.41321 * 108.68548 * 359.97438 * 4 3 2 6 6 C 1.37187 * 125.97029 * 180.02562 * 2 1 3 7 7 C 1.39240 * 133.65968 * 359.94182 * 6 2 1 8 8 C 1.37743 * 120.13320 * 179.97438 * 7 6 2 9 9 C 1.38637 * 120.74949 * 0.04695 * 8 7 6 10 10 C 1.38683 * 120.39945 * 359.97438 * 9 8 7 11 11 C 1.48121 * 120.27002 * 180.02562 * 10 9 8 12 12 C 1.39034 * 119.61810 * 359.97198 * 11 10 9 13 13 C 1.40828 * 118.74967 * 179.97438 * 12 11 10 14 14 C 1.41523 * 120.98206 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00218 * 23.19994 * 14 13 12 16 16 C 1.40051 * 119.99859 * 203.20104 * 14 13 12 17 17 N 1.30734 * 120.00161 * 17.29745 * 16 14 13 18 18 Si 1.86805 * 119.99892 * 197.29776 * 16 14 13 19 19 H 1.48505 * 109.46752 * 59.99770 * 18 16 14 20 20 H 1.48496 * 109.47171 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46795 * 300.00110 * 18 16 14 22 22 C 1.41163 * 118.03499 * 0.02562 * 13 12 11 23 23 C 1.37744 * 119.09429 * 359.97438 * 22 13 12 24 24 N 1.31919 * 121.17142 * 359.74958 * 23 22 13 25 25 H 1.09001 * 109.47140 * 90.02220 * 1 2 3 26 26 H 1.08998 * 109.46898 * 210.02064 * 1 2 3 27 27 H 1.09002 * 109.47364 * 330.02483 * 1 2 3 28 28 H 1.07995 * 125.65939 * 179.97438 * 4 3 2 29 29 H 1.08001 * 119.93495 * 0.02562 * 7 6 2 30 30 H 1.08005 * 119.62940 * 180.02562 * 8 7 6 31 31 H 1.07999 * 119.79851 * 179.97438 * 9 8 7 32 32 H 1.07999 * 120.62835 * 0.02562 * 12 11 10 33 33 H 0.97000 * 120.00300 * 180.02562 * 17 16 14 34 34 H 1.07997 * 120.45125 * 179.97438 * 22 13 12 35 35 H 1.08001 * 119.41254 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2874 1.1333 0.0000 4 6 3.5375 0.7690 -0.0005 5 6 3.5977 -0.6429 -0.0003 6 6 2.2708 -1.1103 -0.0005 7 6 2.0201 -2.4799 -0.0001 8 6 3.0675 -3.3746 -0.0013 9 6 4.3803 -2.9290 -0.0021 10 6 4.6604 -1.5707 -0.0020 11 6 6.0641 -1.0979 -0.0034 12 6 7.1012 -2.0239 -0.0041 13 6 8.4288 -1.5541 -0.0059 14 6 9.5203 -2.4549 -0.0061 15 1 9.3893 -3.4620 -0.3734 16 6 10.7704 -2.0403 0.4701 17 7 10.8642 -0.9696 1.2143 18 14 12.3039 -3.0174 0.0418 19 1 12.4743 -3.0496 -1.4331 20 1 13.4899 -2.3746 0.6627 21 1 12.1665 -4.4042 0.5547 22 6 8.6386 -0.1582 -0.0064 23 6 7.5479 0.6831 -0.0056 24 7 6.3179 0.2063 -0.0093 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5134 28 1 4.3874 1.4353 -0.0011 29 1 1.0025 -2.8416 0.0004 30 1 2.8638 -4.4352 -0.0014 31 1 5.1898 -3.6440 -0.0026 32 1 6.8926 -3.0836 -0.0040 33 1 11.7301 -0.6822 1.5437 34 1 9.6406 0.2447 -0.0073 35 1 7.7025 1.7519 -0.0055 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241449960.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:28 Heat of formation + Delta-G solvation = 99.921822 kcal Electronic energy + Delta-G solvation = -20160.627569 eV Core-core repulsion = 17123.799260 eV Total energy + Delta-G solvation = -3036.828309 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.32555 -40.18164 -37.95456 -36.04420 -34.54548 -32.79859 -32.62071 -30.73916 -29.57383 -27.97419 -27.25141 -24.70183 -23.73640 -22.85116 -22.31681 -21.22752 -19.23361 -17.90358 -17.76502 -17.12454 -16.62596 -16.41867 -15.99024 -15.84568 -15.75845 -15.02278 -14.57033 -14.53366 -14.23623 -14.09507 -13.74142 -13.42670 -13.21143 -13.00769 -12.80633 -12.59156 -12.52247 -12.15296 -11.96011 -11.81714 -11.64480 -11.26620 -11.03677 -9.99630 -9.87094 -9.80177 -9.35490 -8.72362 -8.45948 -6.56265 -0.33905 0.49605 0.93295 1.16678 1.40101 1.51832 1.57895 1.58607 1.69033 2.18603 2.68388 3.00953 3.46139 3.67740 3.78387 3.84444 4.11586 4.24296 4.34903 4.38347 4.47359 4.54604 4.68457 4.69418 4.84242 4.86564 4.97181 5.04196 5.16648 5.21986 5.39301 5.48084 5.48201 5.61260 5.76275 5.88613 5.92491 6.20482 6.22679 6.51403 6.68007 6.79465 6.80398 7.67495 8.23870 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034564 B = 0.004102 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.886710 B = 6823.964547 C = 7554.253774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.416 5.416 3 N -0.292 5.292 4 C 0.084 3.916 5 C -0.181 4.181 6 C 0.108 3.892 7 C -0.139 4.139 8 C -0.059 4.059 9 C -0.156 4.156 10 C 0.027 3.973 11 C 0.145 3.855 12 C -0.264 4.264 13 C 0.099 3.901 14 C -0.487 4.487 15 H 0.086 0.914 16 C 0.039 3.961 17 N -0.813 5.813 18 Si 0.988 3.012 19 H -0.260 1.260 20 H -0.267 1.267 21 H -0.256 1.256 22 C -0.233 4.233 23 C 0.085 3.915 24 N -0.565 5.565 25 H 0.081 0.919 26 H 0.109 0.891 27 H 0.091 0.909 28 H 0.194 0.806 29 H 0.163 0.837 30 H 0.173 0.827 31 H 0.135 0.865 32 H 0.120 0.880 33 H 0.293 0.707 34 H 0.116 0.884 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.396 -4.327 -1.639 14.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.205 5.205 3 N -0.106 5.106 4 C -0.110 4.110 5 C -0.189 4.189 6 C -0.008 4.008 7 C -0.161 4.161 8 C -0.079 4.079 9 C -0.177 4.177 10 C 0.023 3.977 11 C 0.012 3.988 12 C -0.287 4.287 13 C 0.091 3.909 14 C -0.517 4.517 15 H 0.104 0.896 16 C -0.178 4.178 17 N -0.438 5.438 18 Si 0.807 3.193 19 H -0.184 1.184 20 H -0.191 1.191 21 H -0.180 1.180 22 C -0.256 4.256 23 C -0.068 4.068 24 N -0.280 5.280 25 H 0.099 0.901 26 H 0.128 0.872 27 H 0.110 0.890 28 H 0.211 0.789 29 H 0.180 0.820 30 H 0.190 0.810 31 H 0.153 0.847 32 H 0.138 0.862 33 H 0.104 0.896 34 H 0.134 0.866 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.981 -2.506 -1.497 15.263 hybrid contribution 2.419 -1.024 0.012 2.627 sum -12.562 -3.530 -1.485 13.132 Atomic orbital electron populations 1.22066 0.71615 1.05660 1.04170 1.48640 1.06948 1.00734 1.64145 1.76641 1.02421 1.10287 1.21240 1.24238 0.94393 0.94911 0.97487 1.19021 0.93151 0.93963 1.12773 1.19204 0.89825 0.91065 1.00725 1.20438 1.01582 0.87295 1.06811 1.21267 0.90155 1.01176 0.95328 1.21299 0.98668 0.93380 1.04335 1.18428 0.89266 0.93190 0.96803 1.19606 0.92157 0.89667 0.97417 1.22088 0.92664 0.99234 1.14681 1.18154 0.92675 0.93215 0.86863 1.19892 0.94260 0.99599 1.37942 0.89613 1.26861 1.03666 0.95930 0.91391 1.69805 1.28553 1.22776 1.22689 0.85166 0.75356 0.78977 0.79754 1.18393 1.19137 1.18035 1.22275 0.99316 0.94401 1.09586 1.22378 0.88013 0.99548 0.96825 1.67377 1.23321 1.14704 1.22630 0.90070 0.87247 0.88991 0.78929 0.81950 0.80987 0.84733 0.86169 0.89612 0.86578 0.83397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.78 11.45 127.77 1.46 3.25 16 2 N -0.42 -12.36 4.07 -361.08 -1.47 -13.83 16 3 N -0.29 -10.52 12.45 -56.38 -0.70 -11.22 16 4 C 0.08 3.29 11.18 85.69 0.96 4.25 16 5 C -0.18 -7.07 5.99 -21.23 -0.13 -7.20 16 6 C 0.11 3.42 6.88 39.14 0.27 3.69 16 7 C -0.14 -3.31 10.01 22.39 0.22 -3.09 16 8 C -0.06 -1.41 10.00 22.25 0.22 -1.18 16 9 C -0.16 -5.11 9.40 22.47 0.21 -4.90 16 10 C 0.03 1.09 5.90 -19.85 -0.12 0.97 16 11 C 0.14 6.87 6.73 41.80 0.28 7.15 16 12 C -0.26 -13.00 9.25 23.09 0.21 -12.78 16 13 C 0.10 5.27 5.61 -21.12 -0.12 5.15 16 14 C -0.49 -25.24 9.12 23.52 0.21 -25.02 16 15 H 0.09 4.21 7.90 -2.91 -0.02 4.18 16 16 C 0.04 1.88 5.20 85.30 0.44 2.32 16 17 N -0.81 -40.85 10.90 21.84 0.24 -40.62 16 18 Si 0.99 36.15 29.59 68.60 2.03 38.19 16 19 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 20 H -0.27 -9.26 7.11 99.48 0.71 -8.55 16 21 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 22 C -0.23 -12.21 8.80 22.87 0.20 -12.01 16 23 C 0.08 4.08 11.15 84.56 0.94 5.02 16 24 N -0.57 -27.22 7.77 -185.44 -1.44 -28.66 16 25 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.19 7.82 6.66 -2.91 -0.02 7.80 16 29 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 30 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 31 H 0.13 4.20 6.15 -2.91 -0.02 4.19 16 32 H 0.12 5.36 6.18 -2.91 -0.02 5.34 16 33 H 0.29 13.23 8.29 -92.71 -0.77 12.46 16 34 H 0.12 6.20 6.16 -2.91 -0.02 6.18 16 35 H 0.15 6.12 8.06 -2.91 -0.02 6.10 16 Total: -1.00 -66.18 302.70 5.06 -61.12 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 1.13 Total: 29.40 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 5.28 Total: -34.38 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -3.37 Total: -94.33 kcal Atomic # 14 Polarization: 36.15 SS G_CDS: 2.03 Total: 38.19 kcal Total: -66.18 5.06 -61.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241449960.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.038 kcal (2) G-P(sol) polarization free energy of solvation -66.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds