Wall clock time and date at job start Tue Mar 31 2020 01:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40016 * 125.96848 * 2 1 4 4 C 1.30201 * 109.72446 * 180.02562 * 3 2 1 5 5 C 1.41336 * 108.68324 * 0.26522 * 4 3 2 6 6 C 1.37186 * 125.96660 * 180.02562 * 2 1 3 7 7 C 1.39258 * 133.66480 * 359.97438 * 6 2 1 8 8 C 1.37727 * 120.12668 * 180.02562 * 7 6 2 9 9 C 1.38647 * 120.74585 * 359.97438 * 8 7 6 10 10 C 1.38652 * 120.39939 * 359.97438 * 9 8 7 11 11 C 1.48196 * 120.26027 * 180.02562 * 10 9 8 12 12 C 1.39812 * 120.42197 * 129.72486 * 11 10 9 13 13 N 1.31889 * 121.13382 * 179.74815 * 12 11 10 14 14 C 1.31529 * 122.13462 * 0.54375 * 13 12 11 15 15 C 1.40793 * 120.68915 * 359.72521 * 14 13 12 16 16 C 1.41441 * 120.60120 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99442 * 335.73451 * 16 15 14 18 18 C 1.39926 * 120.00440 * 155.73769 * 16 15 14 19 19 N 1.30832 * 119.99458 * 343.64629 * 18 16 15 20 20 Si 1.86796 * 120.00245 * 163.64100 * 18 16 15 21 21 H 1.48506 * 109.46838 * 90.00112 * 20 18 16 22 22 H 1.48500 * 109.47260 * 209.99753 * 20 18 16 23 23 H 1.48498 * 109.47313 * 330.00476 * 20 18 16 24 24 C 1.39251 * 120.42094 * 310.00340 * 11 10 9 25 25 H 1.09004 * 109.47245 * 89.97020 * 1 2 3 26 26 H 1.09000 * 109.47204 * 209.97685 * 1 2 3 27 27 H 1.09009 * 109.46638 * 329.97090 * 1 2 3 28 28 H 1.08004 * 125.66074 * 180.02562 * 4 3 2 29 29 H 1.07999 * 119.93465 * 0.02562 * 7 6 2 30 30 H 1.08001 * 119.62443 * 180.02562 * 8 7 6 31 31 H 1.08001 * 119.79803 * 180.02562 * 9 8 7 32 32 H 1.08000 * 119.43394 * 0.02562 * 12 11 10 33 33 H 1.07994 * 119.65816 * 179.70549 * 14 13 12 34 34 H 0.97001 * 119.99694 * 179.97438 * 19 18 16 35 35 H 1.08006 * 120.95946 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2874 1.1332 0.0000 4 6 3.5374 0.7690 -0.0005 5 6 3.5976 -0.6431 -0.0071 6 6 2.2707 -1.1103 -0.0005 7 6 2.0201 -2.4802 -0.0007 8 6 3.0674 -3.3745 -0.0007 9 6 4.3803 -2.9287 -0.0011 10 6 4.6600 -1.5707 -0.0020 11 6 6.0644 -1.0975 -0.0029 12 6 6.4888 -0.1418 -0.9310 13 7 7.7340 0.2928 -0.9413 14 6 8.6373 -0.1521 -0.0951 15 6 8.3018 -1.1193 0.8714 16 6 9.2749 -1.5969 1.7801 17 1 10.3229 -1.5481 1.5239 18 6 8.8797 -2.1325 3.0109 19 7 7.6727 -1.9096 3.4640 20 14 10.0752 -3.1659 4.0070 21 1 10.8487 -2.2861 4.9196 22 1 9.3202 -4.1652 4.8048 23 1 11.0072 -3.8678 3.0884 24 6 6.9795 -1.6034 0.9167 25 1 -0.3634 0.0005 -1.0277 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5143 28 1 4.3874 1.4354 -0.0003 29 1 1.0025 -2.8418 -0.0008 30 1 2.8638 -4.4352 -0.0012 31 1 5.1899 -3.6435 -0.0015 32 1 5.7838 0.2506 -1.6489 33 1 9.6470 0.2282 -0.1423 34 1 7.3986 -2.2812 4.3170 35 1 6.6841 -2.3454 1.6438 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241450607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:59 Heat of formation + Delta-G solvation = 111.400331 kcal Electronic energy + Delta-G solvation = -20391.894559 eV Core-core repulsion = 17355.563996 eV Total energy + Delta-G solvation = -3036.330563 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.12424 -38.42349 -36.69817 -34.15862 -33.54073 -31.77842 -30.38300 -29.53393 -28.17908 -26.46503 -25.59684 -23.17133 -22.13599 -21.36721 -21.21470 -19.60592 -17.51545 -16.59229 -16.42637 -15.67223 -15.32826 -15.20724 -14.86535 -14.42297 -14.10877 -13.82809 -13.37808 -12.93905 -12.78762 -12.58081 -12.30514 -11.77713 -11.65919 -11.49995 -11.42261 -11.26122 -11.12923 -10.91222 -10.63120 -10.55724 -9.95992 -9.73091 -9.42727 -8.49782 -8.21092 -8.08575 -7.77889 -7.22021 -6.89588 -4.54874 1.11448 1.80624 2.55645 2.61156 2.81603 2.91479 2.99912 3.03575 3.14987 3.81756 4.15607 4.51803 4.62533 4.86086 5.12562 5.16018 5.32801 5.34562 5.43424 5.57022 5.59396 5.61208 5.94663 6.01767 6.11585 6.26262 6.49079 6.66969 6.68949 6.74390 6.78272 7.00166 7.05405 7.11325 7.19459 7.31918 7.61386 7.79346 7.86150 7.88145 8.35069 8.61652 8.63986 9.56319 10.01324 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021465 B = 0.005004 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.149063 B = 5593.623551 C = 6188.377738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.418 5.418 3 N -0.271 5.271 4 C 0.091 3.909 5 C -0.169 4.169 6 C 0.128 3.872 7 C -0.167 4.167 8 C -0.060 4.060 9 C -0.161 4.161 10 C 0.078 3.922 11 C -0.100 4.100 12 C -0.019 4.019 13 N -0.469 5.469 14 C -0.016 4.016 15 C 0.062 3.938 16 C -0.449 4.449 17 H 0.084 0.916 18 C 0.074 3.926 19 N -0.789 5.789 20 Si 0.911 3.089 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.109 4.109 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.192 0.808 29 H 0.117 0.883 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.284 0.716 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.688 -3.089 -2.282 11.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.206 5.206 3 N -0.083 5.083 4 C -0.104 4.104 5 C -0.177 4.177 6 C 0.013 3.987 7 C -0.189 4.189 8 C -0.080 4.080 9 C -0.181 4.181 10 C 0.074 3.926 11 C -0.102 4.102 12 C -0.177 4.177 13 N -0.176 5.176 14 C -0.177 4.177 15 C 0.058 3.942 16 C -0.479 4.479 17 H 0.102 0.898 18 C -0.144 4.144 19 N -0.413 5.413 20 Si 0.735 3.265 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.135 4.135 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.209 0.791 29 H 0.135 0.865 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.095 0.905 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.638 -1.465 -2.681 12.033 hybrid contribution 0.614 -1.759 1.303 2.274 sum -11.025 -3.224 -1.378 11.569 Atomic orbital electron populations 1.21615 0.74650 1.03755 1.02471 1.48202 1.05398 1.01615 1.65416 1.76690 1.02154 1.08919 1.20581 1.23961 0.94556 0.94182 0.97747 1.18845 0.92342 0.93542 1.12924 1.18789 0.90389 0.89592 0.99930 1.19846 0.99288 0.88834 1.10923 1.20830 0.92015 0.98815 0.96375 1.21012 0.96460 0.94664 1.05953 1.18482 0.91470 0.91597 0.91003 1.19451 0.91331 1.00308 0.99129 1.21760 0.93058 1.01258 1.01617 1.66948 1.02051 1.25175 1.23410 1.22554 0.97825 0.99345 0.97947 1.18459 0.93022 0.90344 0.92425 1.19553 0.94811 1.34315 0.99228 0.89796 1.25967 0.95879 0.94594 0.97998 1.69784 1.18839 1.34158 1.18549 0.86252 0.80739 0.79915 0.79590 1.19304 1.19979 1.18263 1.21818 0.92942 1.00441 0.98253 0.91703 0.90179 0.89820 0.79114 0.86498 0.85656 0.85528 0.86186 0.85563 0.90483 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.20 11.45 59.85 0.69 1.88 16 2 N -0.42 -6.54 4.07 -65.47 -0.27 -6.80 16 3 N -0.27 -4.76 12.45 30.83 0.38 -4.37 16 4 C 0.09 1.65 11.21 -17.07 -0.19 1.46 16 5 C -0.17 -3.20 5.88 -106.74 -0.63 -3.83 16 6 C 0.13 2.15 6.88 -84.17 -0.58 1.57 16 7 C -0.17 -2.39 10.01 -39.39 -0.39 -2.78 16 8 C -0.06 -0.86 10.00 -39.62 -0.40 -1.25 16 9 C -0.16 -2.82 9.50 -39.28 -0.37 -3.19 16 10 C 0.08 1.55 5.51 -104.59 -0.58 0.98 16 11 C -0.10 -2.25 5.41 -104.84 -0.57 -2.81 16 12 C -0.02 -0.43 9.92 -16.94 -0.17 -0.60 16 13 N -0.47 -11.30 10.32 -12.26 -0.13 -11.42 16 14 C -0.02 -0.38 10.96 -16.72 -0.18 -0.57 16 15 C 0.06 1.57 5.59 -106.71 -0.60 0.98 16 16 C -0.45 -11.20 9.09 -37.73 -0.34 -11.54 16 17 H 0.08 1.98 7.90 -52.48 -0.41 1.57 16 18 C 0.07 1.76 5.20 -17.35 -0.09 1.67 16 19 N -0.79 -19.40 10.90 55.55 0.61 -18.80 16 20 Si 0.91 17.63 29.59 -169.99 -5.03 12.60 16 21 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 22 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 23 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 24 C -0.11 -2.68 8.29 -38.20 -0.32 -3.00 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.77 8.14 -51.92 -0.42 0.34 16 28 H 0.19 3.30 7.68 -52.48 -0.40 2.90 16 29 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.13 2.15 8.04 -52.49 -0.42 1.73 16 32 H 0.12 2.48 7.84 -52.49 -0.41 2.07 16 33 H 0.13 2.86 8.06 -52.49 -0.42 2.43 16 34 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 35 H 0.13 3.32 6.20 -52.48 -0.33 3.00 16 LS Contribution 308.09 15.07 4.64 4.64 Total: -1.00 -28.87 308.09 -8.16 -37.03 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -3.65 Total: 8.16 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -4.72 Total: -21.03 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.60 Total: -41.40 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.87 -8.16 -37.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241450607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.426 kcal (2) G-P(sol) polarization free energy of solvation -28.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds