Wall clock time and date at job start Tue Mar 31 2020 01:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40016 * 125.96848 * 2 1 4 4 C 1.30201 * 109.72446 * 180.02562 * 3 2 1 5 5 C 1.41336 * 108.68324 * 0.26522 * 4 3 2 6 6 C 1.37186 * 125.96660 * 180.02562 * 2 1 3 7 7 C 1.39258 * 133.66480 * 359.97438 * 6 2 1 8 8 C 1.37727 * 120.12668 * 180.02562 * 7 6 2 9 9 C 1.38647 * 120.74585 * 359.97438 * 8 7 6 10 10 C 1.38652 * 120.39939 * 359.97438 * 9 8 7 11 11 C 1.48196 * 120.26027 * 180.02562 * 10 9 8 12 12 C 1.39812 * 120.42197 * 129.72486 * 11 10 9 13 13 N 1.31889 * 121.13382 * 179.74815 * 12 11 10 14 14 C 1.31529 * 122.13462 * 0.54375 * 13 12 11 15 15 C 1.40793 * 120.68915 * 359.72521 * 14 13 12 16 16 C 1.41441 * 120.60120 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99442 * 335.73451 * 16 15 14 18 18 C 1.39926 * 120.00440 * 155.73769 * 16 15 14 19 19 N 1.30832 * 119.99458 * 343.64629 * 18 16 15 20 20 Si 1.86796 * 120.00245 * 163.64100 * 18 16 15 21 21 H 1.48506 * 109.46838 * 90.00112 * 20 18 16 22 22 H 1.48500 * 109.47260 * 209.99753 * 20 18 16 23 23 H 1.48498 * 109.47313 * 330.00476 * 20 18 16 24 24 C 1.39251 * 120.42094 * 310.00340 * 11 10 9 25 25 H 1.09004 * 109.47245 * 89.97020 * 1 2 3 26 26 H 1.09000 * 109.47204 * 209.97685 * 1 2 3 27 27 H 1.09009 * 109.46638 * 329.97090 * 1 2 3 28 28 H 1.08004 * 125.66074 * 180.02562 * 4 3 2 29 29 H 1.07999 * 119.93465 * 0.02562 * 7 6 2 30 30 H 1.08001 * 119.62443 * 180.02562 * 8 7 6 31 31 H 1.08001 * 119.79803 * 180.02562 * 9 8 7 32 32 H 1.08000 * 119.43394 * 0.02562 * 12 11 10 33 33 H 1.07994 * 119.65816 * 179.70549 * 14 13 12 34 34 H 0.97001 * 119.99694 * 179.97438 * 19 18 16 35 35 H 1.08006 * 120.95946 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2874 1.1332 0.0000 4 6 3.5374 0.7690 -0.0005 5 6 3.5976 -0.6431 -0.0071 6 6 2.2707 -1.1103 -0.0005 7 6 2.0201 -2.4802 -0.0007 8 6 3.0674 -3.3745 -0.0007 9 6 4.3803 -2.9287 -0.0011 10 6 4.6600 -1.5707 -0.0020 11 6 6.0644 -1.0975 -0.0029 12 6 6.4888 -0.1418 -0.9310 13 7 7.7340 0.2928 -0.9413 14 6 8.6373 -0.1521 -0.0951 15 6 8.3018 -1.1193 0.8714 16 6 9.2749 -1.5969 1.7801 17 1 10.3229 -1.5481 1.5239 18 6 8.8797 -2.1325 3.0109 19 7 7.6727 -1.9096 3.4640 20 14 10.0752 -3.1659 4.0070 21 1 10.8487 -2.2861 4.9196 22 1 9.3202 -4.1652 4.8048 23 1 11.0072 -3.8678 3.0884 24 6 6.9795 -1.6034 0.9167 25 1 -0.3634 0.0005 -1.0277 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5143 28 1 4.3874 1.4354 -0.0003 29 1 1.0025 -2.8418 -0.0008 30 1 2.8638 -4.4352 -0.0012 31 1 5.1899 -3.6435 -0.0015 32 1 5.7838 0.2506 -1.6489 33 1 9.6470 0.2282 -0.1423 34 1 7.3986 -2.2812 4.3170 35 1 6.6841 -2.3454 1.6438 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241450607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:59 Heat of formation + Delta-G solvation = 95.801684 kcal Electronic energy + Delta-G solvation = -20392.570967 eV Core-core repulsion = 17355.563996 eV Total energy + Delta-G solvation = -3037.006971 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.40700 -40.20065 -38.02654 -35.97249 -34.81007 -33.21767 -32.22992 -30.80699 -29.68118 -27.69359 -27.28075 -24.64010 -23.77105 -22.85312 -22.71203 -21.01276 -19.21432 -17.86080 -17.81549 -17.45211 -16.96693 -16.49928 -16.25848 -16.00778 -15.45639 -15.21310 -14.70396 -14.33787 -14.17524 -13.86293 -13.57001 -13.46844 -13.30678 -13.17224 -12.80904 -12.71789 -12.59163 -12.38887 -12.14173 -11.88240 -11.61425 -11.21715 -11.06174 -10.11131 -10.02831 -9.65224 -9.45103 -8.69593 -8.60177 -6.45578 -0.23643 0.47308 0.85580 1.05458 1.40859 1.50131 1.51222 1.55128 1.57653 2.19470 2.68201 2.87145 3.46633 3.64312 3.69840 3.93973 4.06372 4.16967 4.25366 4.34081 4.45462 4.49297 4.61832 4.66824 4.69950 4.81113 4.87893 5.02362 5.05077 5.18771 5.27537 5.39021 5.52425 5.62160 5.80324 5.85191 5.92944 6.01994 6.16929 6.47911 6.58090 6.75618 6.76757 7.68167 8.24562 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021465 B = 0.005004 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.149063 B = 5593.623551 C = 6188.377738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.411 5.411 3 N -0.279 5.279 4 C 0.068 3.932 5 C -0.190 4.190 6 C 0.116 3.884 7 C -0.145 4.145 8 C -0.056 4.056 9 C -0.163 4.163 10 C 0.037 3.963 11 C -0.086 4.086 12 C -0.025 4.025 13 N -0.479 5.479 14 C -0.037 4.037 15 C 0.039 3.961 16 C -0.479 4.479 17 H 0.088 0.912 18 C 0.037 3.963 19 N -0.819 5.819 20 Si 0.986 3.014 21 H -0.262 1.262 22 H -0.266 1.266 23 H -0.255 1.255 24 C -0.130 4.130 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.092 0.908 28 H 0.186 0.814 29 H 0.163 0.837 30 H 0.168 0.832 31 H 0.122 0.878 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.292 0.708 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.034 -4.949 -1.892 14.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.201 5.201 3 N -0.093 5.093 4 C -0.126 4.126 5 C -0.198 4.198 6 C 0.000 4.000 7 C -0.167 4.167 8 C -0.076 4.076 9 C -0.183 4.183 10 C 0.034 3.966 11 C -0.089 4.089 12 C -0.183 4.183 13 N -0.186 5.186 14 C -0.197 4.197 15 C 0.035 3.965 16 C -0.509 4.509 17 H 0.106 0.894 18 C -0.179 4.179 19 N -0.444 5.444 20 Si 0.806 3.194 21 H -0.187 1.187 22 H -0.190 1.190 23 H -0.179 1.179 24 C -0.156 4.156 25 H 0.102 0.898 26 H 0.127 0.873 27 H 0.111 0.889 28 H 0.202 0.798 29 H 0.180 0.820 30 H 0.186 0.814 31 H 0.140 0.860 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.102 0.898 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.004 -3.303 -2.307 14.572 hybrid contribution 1.109 -1.167 1.131 1.968 sum -12.895 -4.470 -1.175 13.698 Atomic orbital electron populations 1.22104 0.71447 1.05718 1.04364 1.48635 1.06995 1.00594 1.63830 1.76602 1.02118 1.10292 1.20317 1.23914 0.94922 0.94349 0.99388 1.18988 0.93436 0.93634 1.13761 1.19123 0.89655 0.90960 1.00276 1.20379 1.01441 0.87371 1.07477 1.21242 0.90331 1.01076 0.94971 1.21193 0.98285 0.93568 1.05255 1.18428 0.90107 0.93045 0.95042 1.19657 0.92794 0.98927 0.97487 1.22067 0.92851 1.01390 1.01977 1.66944 1.02653 1.25447 1.23535 1.22721 0.98498 0.99985 0.98501 1.18782 0.93827 0.90827 0.93047 1.19847 0.95005 1.35790 1.00210 0.89421 1.26823 0.97577 0.94959 0.98522 1.69847 1.20563 1.34729 1.19248 0.85138 0.78296 0.78117 0.77860 1.18701 1.19020 1.17875 1.21779 0.93431 1.01321 0.99084 0.89768 0.87294 0.88905 0.79761 0.81997 0.81427 0.85955 0.84602 0.84629 0.89752 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.71 11.45 127.77 1.46 3.18 16 2 N -0.41 -11.89 4.07 -361.06 -1.47 -13.36 16 3 N -0.28 -9.67 12.45 -56.37 -0.70 -10.37 16 4 C 0.07 2.55 11.21 85.70 0.96 3.52 16 5 C -0.19 -7.21 5.88 -21.23 -0.12 -7.33 16 6 C 0.12 3.62 6.88 39.15 0.27 3.89 16 7 C -0.15 -3.52 10.01 22.39 0.22 -3.30 16 8 C -0.06 -1.41 10.00 22.25 0.22 -1.18 16 9 C -0.16 -5.58 9.50 22.47 0.21 -5.36 16 10 C 0.04 1.51 5.51 -19.84 -0.11 1.40 16 11 C -0.09 -4.05 5.41 -20.01 -0.11 -4.16 16 12 C -0.02 -1.17 9.92 85.07 0.84 -0.32 16 13 N -0.48 -23.97 10.32 -192.69 -1.99 -25.96 16 14 C -0.04 -1.87 10.96 85.36 0.94 -0.94 16 15 C 0.04 2.10 5.59 -21.22 -0.12 1.98 16 16 C -0.48 -24.71 9.09 23.47 0.21 -24.50 16 17 H 0.09 4.28 7.90 -2.91 -0.02 4.26 16 18 C 0.04 1.80 5.20 85.25 0.44 2.24 16 19 N -0.82 -41.21 10.90 21.82 0.24 -40.98 16 20 Si 0.99 36.11 29.59 68.60 2.03 38.14 16 21 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 22 H -0.27 -9.27 7.11 99.48 0.71 -8.56 16 23 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 24 C -0.13 -6.72 8.29 23.16 0.19 -6.53 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.19 6.81 7.68 -2.91 -0.02 6.79 16 29 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 31 H 0.12 4.17 8.04 -2.91 -0.02 4.14 16 32 H 0.14 5.82 7.84 -2.91 -0.02 5.80 16 33 H 0.14 6.44 8.06 -2.91 -0.02 6.42 16 34 H 0.29 13.26 8.30 -92.71 -0.77 12.49 16 35 H 0.12 6.37 6.20 -2.91 -0.02 6.35 16 Total: -1.00 -65.12 308.09 4.74 -60.38 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 1.11 Total: 29.57 kcal Atomic # 6 Polarization: -42.95 SS G_CDS: 5.52 Total: -37.43 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -3.92 Total: -90.66 kcal Atomic # 14 Polarization: 36.11 SS G_CDS: 2.03 Total: 38.14 kcal Total: -65.12 4.74 -60.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241450607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.179 kcal (2) G-P(sol) polarization free energy of solvation -65.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds