Wall clock time and date at job start Tue Mar 31 2020 01:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40026 * 125.98046 * 2 1 4 4 C 1.30330 * 109.67991 * 179.97438 * 3 2 1 5 5 C 1.41119 * 108.69786 * 0.02562 * 4 3 2 6 6 C 1.37189 * 125.98604 * 179.68853 * 2 1 3 7 7 C 1.39278 * 133.61847 * 0.72419 * 6 2 1 8 8 C 1.37946 * 120.21476 * 179.58280 * 7 6 2 9 9 C 1.38398 * 120.79916 * 359.75708 * 8 7 6 10 10 C 1.39245 * 120.34757 * 359.95577 * 9 8 7 11 11 C 1.47393 * 120.29814 * 179.97438 * 10 9 8 12 12 C 1.39914 * 120.66778 * 65.02975 * 11 10 9 13 13 C 1.38248 * 118.46121 * 179.97438 * 12 11 10 14 14 C 1.39121 * 119.76272 * 359.97438 * 13 12 11 15 15 N 1.31251 * 121.38779 * 359.97438 * 14 13 12 16 16 C 1.33749 * 121.64270 * 359.72857 * 15 14 13 17 17 C 1.40651 * 119.95845 * 180.28599 * 16 15 14 18 18 H 1.07995 * 120.00204 * 180.24317 * 17 16 15 19 19 C 1.40129 * 120.00099 * 0.24935 * 17 16 15 20 20 N 1.30709 * 119.99916 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00127 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47311 * 89.99598 * 21 19 17 23 23 H 1.48501 * 109.47190 * 209.99496 * 21 19 17 24 24 H 1.48499 * 109.47212 * 329.99542 * 21 19 17 25 25 H 1.09001 * 109.47060 * 90.02901 * 1 2 3 26 26 H 1.09004 * 109.47073 * 210.02390 * 1 2 3 27 27 H 1.09000 * 109.47212 * 330.02472 * 1 2 3 28 28 H 1.08001 * 125.65092 * 179.97438 * 4 3 2 29 29 H 1.07999 * 119.88932 * 359.31976 * 7 6 2 30 30 H 1.07997 * 119.60099 * 179.73311 * 8 7 6 31 31 H 1.07993 * 119.82954 * 179.97438 * 9 8 7 32 32 H 1.08001 * 120.76758 * 359.94783 * 12 11 10 33 33 H 1.08002 * 120.11491 * 179.97438 * 13 12 11 34 34 H 1.07998 * 119.30765 * 179.97438 * 14 13 12 35 35 H 0.97003 * 120.00436 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2877 1.1331 0.0000 4 6 3.5386 0.7673 0.0005 5 6 3.5977 -0.6426 0.0003 6 6 2.2712 -1.1101 0.0060 7 6 2.0199 -2.4800 0.0007 8 6 3.0672 -3.3778 0.0010 9 6 4.3789 -2.9366 0.0014 10 6 4.6626 -1.5733 0.0007 11 6 6.0600 -1.1046 0.0017 12 6 6.8992 -1.3601 -1.0882 13 6 8.2016 -0.8989 -1.0392 14 6 8.6448 -0.1989 0.0783 15 7 7.8506 0.0374 1.0962 16 6 6.5792 -0.3777 1.1054 17 6 5.7575 -0.0997 2.2126 18 1 4.7320 -0.4380 2.2224 19 6 6.2695 0.6163 3.3028 20 7 7.5109 1.0255 3.2912 21 14 5.1781 0.9862 4.7730 22 1 5.2898 -0.1158 5.7622 23 1 5.6090 2.2609 5.4012 24 1 3.7677 1.1074 4.3243 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5134 28 1 4.3891 1.4329 0.0003 29 1 1.0019 -2.8404 0.0007 30 1 2.8610 -4.4379 0.0012 31 1 5.1868 -3.6532 0.0020 32 1 6.5381 -1.9053 -1.9477 33 1 8.8726 -1.0815 -1.8656 34 1 9.6638 0.1577 0.1090 35 1 7.8655 1.5208 4.0460 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241451796.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:05 Heat of formation + Delta-G solvation = 125.068218 kcal Electronic energy + Delta-G solvation = -20992.711053 eV Core-core repulsion = 17956.973174 eV Total energy + Delta-G solvation = -3035.737879 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.85437 -38.24532 -36.39324 -33.74285 -33.30098 -31.56566 -30.31118 -29.29570 -28.23124 -26.22748 -25.64642 -22.96665 -21.77435 -21.19313 -21.10778 -19.34839 -17.51247 -16.60001 -16.32324 -15.62652 -15.06068 -14.76468 -14.48762 -14.20665 -13.98897 -13.74945 -13.15833 -12.73079 -12.66164 -12.39183 -12.13227 -11.95719 -11.40120 -11.28804 -11.20960 -11.15669 -11.00784 -10.69778 -10.38009 -10.27468 -9.99082 -9.46797 -9.31352 -8.29452 -8.02258 -7.72542 -7.63172 -7.10271 -6.49291 -4.59066 1.40848 2.07477 2.67137 2.83638 2.95188 3.05468 3.10285 3.14645 3.19375 3.89919 4.39197 4.67862 4.81864 5.11110 5.31426 5.37668 5.49295 5.60110 5.64151 5.81524 5.85831 5.86712 6.06788 6.12085 6.33233 6.37364 6.52100 6.58441 6.79788 6.91102 6.98554 7.07642 7.21480 7.26936 7.37904 7.54576 7.56434 7.70527 7.97933 8.15638 8.20263 8.55963 8.85881 10.01727 10.20098 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013606 B = 0.008347 C = 0.006165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.483651 B = 3353.523234 C = 4540.552539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.421 5.421 3 N -0.280 5.280 4 C 0.108 3.892 5 C -0.165 4.165 6 C 0.127 3.873 7 C -0.179 4.179 8 C -0.060 4.060 9 C -0.179 4.179 10 C 0.118 3.882 11 C -0.249 4.249 12 C -0.027 4.027 13 C -0.322 4.322 14 C 0.134 3.866 15 N -0.482 5.482 16 C 0.272 3.728 17 C -0.410 4.410 18 H 0.088 0.912 19 C 0.070 3.930 20 N -0.706 5.706 21 Si 0.900 3.100 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.260 1.260 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.189 0.811 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.632 -3.917 -3.678 10.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.210 5.210 3 N -0.093 5.093 4 C -0.087 4.087 5 C -0.173 4.173 6 C 0.012 3.988 7 C -0.201 4.201 8 C -0.081 4.081 9 C -0.199 4.199 10 C 0.114 3.886 11 C -0.254 4.254 12 C -0.052 4.052 13 C -0.345 4.345 14 C -0.035 4.035 15 N -0.193 5.193 16 C 0.149 3.851 17 C -0.440 4.440 18 H 0.106 0.894 19 C -0.156 4.156 20 N -0.326 5.326 21 Si 0.724 3.276 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.184 1.184 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.206 0.794 29 H 0.130 0.870 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.136 0.864 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.232 -2.283 -2.775 9.907 hybrid contribution -0.233 -1.003 -0.057 1.032 sum -9.466 -3.286 -2.832 10.413 Atomic orbital electron populations 1.21548 0.75070 1.03519 1.02145 1.48164 1.05189 1.01780 1.65892 1.76740 1.02223 1.08750 1.21580 1.23863 0.94206 0.94394 0.96209 1.18935 0.92132 0.93604 1.12611 1.18821 0.90596 0.89495 0.99878 1.19788 0.98946 0.88916 1.12442 1.20742 0.92218 0.98381 0.96743 1.21046 0.95983 0.94790 1.08060 1.18274 0.91385 0.90867 0.88035 1.19300 0.92680 1.13923 0.99501 1.20852 0.93092 0.95662 0.95552 1.21179 0.97114 1.14181 1.02059 1.22617 0.98289 0.92988 0.89571 1.68789 1.03820 1.22308 1.24369 1.18486 0.88889 0.87290 0.90457 1.19626 0.98219 1.27513 0.98640 0.89445 1.26103 0.95123 0.94647 0.99763 1.70113 1.13118 1.21260 1.28124 0.86415 0.81438 0.78686 0.81074 1.19225 1.19885 1.18391 0.91992 0.90415 0.90043 0.79394 0.86975 0.86218 0.86198 0.88540 0.88691 0.86406 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.43 11.45 59.85 0.69 2.11 16 2 N -0.42 -7.43 4.07 -65.47 -0.27 -7.69 16 3 N -0.28 -5.56 12.46 30.81 0.38 -5.18 16 4 C 0.11 2.25 11.14 -17.10 -0.19 2.06 16 5 C -0.17 -3.44 4.74 -106.68 -0.51 -3.95 16 6 C 0.13 2.37 6.88 -84.17 -0.58 1.79 16 7 C -0.18 -2.84 10.01 -39.30 -0.39 -3.24 16 8 C -0.06 -0.94 10.00 -39.63 -0.40 -1.33 16 9 C -0.18 -3.30 9.73 -39.15 -0.38 -3.68 16 10 C 0.12 2.50 4.49 -104.58 -0.47 2.03 16 11 C -0.25 -5.78 5.25 -104.11 -0.55 -6.33 16 12 C -0.03 -0.59 9.88 -38.95 -0.39 -0.97 16 13 C -0.32 -6.92 10.10 -39.25 -0.40 -7.31 16 14 C 0.13 3.12 11.17 -17.47 -0.20 2.93 16 15 N -0.48 -12.70 7.85 -10.89 -0.09 -12.79 16 16 C 0.27 7.04 6.57 -84.69 -0.56 6.48 16 17 C -0.41 -10.56 8.02 -37.96 -0.30 -10.87 16 18 H 0.09 2.24 5.93 -52.49 -0.31 1.93 16 19 C 0.07 1.75 5.50 -17.32 -0.10 1.66 16 20 N -0.71 -18.18 11.46 55.56 0.64 -17.55 16 21 Si 0.90 18.84 29.56 -169.99 -5.03 13.82 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.19 3.91 8.06 -52.49 -0.42 3.48 16 29 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 32 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 35 H 0.27 6.43 8.29 -40.82 -0.34 6.10 16 LS Contribution 306.70 15.07 4.62 4.62 Total: -1.00 -29.68 306.70 -8.12 -37.80 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -3.67 Total: 5.59 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -4.71 Total: -18.62 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.67 Total: -43.20 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.68 -8.12 -37.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241451796.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.869 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds