Wall clock time and date at job start Tue Mar 31 2020 01:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40026 * 125.98046 * 2 1 4 4 C 1.30330 * 109.67991 * 179.97438 * 3 2 1 5 5 C 1.41119 * 108.69786 * 0.02562 * 4 3 2 6 6 C 1.37189 * 125.98604 * 179.68853 * 2 1 3 7 7 C 1.39278 * 133.61847 * 0.72419 * 6 2 1 8 8 C 1.37946 * 120.21476 * 179.58280 * 7 6 2 9 9 C 1.38398 * 120.79916 * 359.75708 * 8 7 6 10 10 C 1.39245 * 120.34757 * 359.95577 * 9 8 7 11 11 C 1.47393 * 120.29814 * 179.97438 * 10 9 8 12 12 C 1.39914 * 120.66778 * 65.02975 * 11 10 9 13 13 C 1.38248 * 118.46121 * 179.97438 * 12 11 10 14 14 C 1.39121 * 119.76272 * 359.97438 * 13 12 11 15 15 N 1.31251 * 121.38779 * 359.97438 * 14 13 12 16 16 C 1.33749 * 121.64270 * 359.72857 * 15 14 13 17 17 C 1.40651 * 119.95845 * 180.28599 * 16 15 14 18 18 H 1.07995 * 120.00204 * 180.24317 * 17 16 15 19 19 C 1.40129 * 120.00099 * 0.24935 * 17 16 15 20 20 N 1.30709 * 119.99916 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00127 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47311 * 89.99598 * 21 19 17 23 23 H 1.48501 * 109.47190 * 209.99496 * 21 19 17 24 24 H 1.48499 * 109.47212 * 329.99542 * 21 19 17 25 25 H 1.09001 * 109.47060 * 90.02901 * 1 2 3 26 26 H 1.09004 * 109.47073 * 210.02390 * 1 2 3 27 27 H 1.09000 * 109.47212 * 330.02472 * 1 2 3 28 28 H 1.08001 * 125.65092 * 179.97438 * 4 3 2 29 29 H 1.07999 * 119.88932 * 359.31976 * 7 6 2 30 30 H 1.07997 * 119.60099 * 179.73311 * 8 7 6 31 31 H 1.07993 * 119.82954 * 179.97438 * 9 8 7 32 32 H 1.08001 * 120.76758 * 359.94783 * 12 11 10 33 33 H 1.08002 * 120.11491 * 179.97438 * 13 12 11 34 34 H 1.07998 * 119.30765 * 179.97438 * 14 13 12 35 35 H 0.97003 * 120.00436 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2877 1.1331 0.0000 4 6 3.5386 0.7673 0.0005 5 6 3.5977 -0.6426 0.0003 6 6 2.2712 -1.1101 0.0060 7 6 2.0199 -2.4800 0.0007 8 6 3.0672 -3.3778 0.0010 9 6 4.3789 -2.9366 0.0014 10 6 4.6626 -1.5733 0.0007 11 6 6.0600 -1.1046 0.0017 12 6 6.8992 -1.3601 -1.0882 13 6 8.2016 -0.8989 -1.0392 14 6 8.6448 -0.1989 0.0783 15 7 7.8506 0.0374 1.0962 16 6 6.5792 -0.3777 1.1054 17 6 5.7575 -0.0997 2.2126 18 1 4.7320 -0.4380 2.2224 19 6 6.2695 0.6163 3.3028 20 7 7.5109 1.0255 3.2912 21 14 5.1781 0.9862 4.7730 22 1 5.2898 -0.1158 5.7622 23 1 5.6090 2.2609 5.4012 24 1 3.7677 1.1074 4.3243 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5134 28 1 4.3891 1.4329 0.0003 29 1 1.0019 -2.8404 0.0007 30 1 2.8610 -4.4379 0.0012 31 1 5.1868 -3.6532 0.0020 32 1 6.5381 -1.9053 -1.9477 33 1 8.8726 -1.0815 -1.8656 34 1 9.6638 0.1577 0.1090 35 1 7.8655 1.5208 4.0460 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241451796.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:03 Heat of formation + Delta-G solvation = 108.854247 kcal Electronic energy + Delta-G solvation = -20993.414144 eV Core-core repulsion = 17956.973174 eV Total energy + Delta-G solvation = -3036.440970 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.26595 -40.00062 -37.80540 -35.55839 -34.67659 -33.08157 -32.10081 -30.67778 -29.80352 -27.61952 -27.24780 -24.51568 -23.41747 -22.77979 -22.62140 -20.80946 -19.35318 -18.01176 -17.68596 -17.37186 -16.38116 -16.27456 -16.10795 -15.86010 -15.49453 -15.15897 -14.55988 -14.36114 -13.94839 -13.81938 -13.65100 -13.41684 -13.00143 -12.93167 -12.79667 -12.63063 -12.47860 -12.37450 -11.97242 -11.77464 -11.59247 -11.26430 -10.76639 -10.04707 -9.59420 -9.45399 -9.34386 -8.55453 -8.28959 -6.46370 -0.01711 0.66022 0.92670 1.18332 1.33140 1.44100 1.48991 1.61618 1.68196 2.16825 2.83395 2.98404 3.59999 3.81515 3.94697 4.10294 4.23560 4.35312 4.39837 4.41735 4.47456 4.52840 4.60146 4.67360 4.81327 4.90759 5.00592 5.03786 5.17074 5.22926 5.45611 5.52449 5.64942 5.71841 5.80941 5.94185 6.05791 6.20076 6.29564 6.33066 6.70016 6.72715 7.01168 8.20018 8.40603 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013606 B = 0.008347 C = 0.006165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.483651 B = 3353.523234 C = 4540.552539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.416 5.416 3 N -0.292 5.292 4 C 0.084 3.916 5 C -0.188 4.188 6 C 0.113 3.887 7 C -0.162 4.162 8 C -0.053 4.053 9 C -0.180 4.180 10 C 0.079 3.921 11 C -0.244 4.244 12 C -0.039 4.039 13 C -0.310 4.310 14 C 0.110 3.890 15 N -0.519 5.519 16 C 0.246 3.754 17 C -0.435 4.435 18 H 0.079 0.921 19 C 0.032 3.968 20 N -0.745 5.745 21 Si 0.965 3.035 22 H -0.259 1.259 23 H -0.263 1.263 24 H -0.270 1.270 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.089 0.911 28 H 0.170 0.830 29 H 0.156 0.844 30 H 0.166 0.834 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.137 0.863 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.111 -6.019 -4.243 13.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.206 5.206 3 N -0.106 5.106 4 C -0.110 4.110 5 C -0.196 4.196 6 C -0.003 4.003 7 C -0.184 4.184 8 C -0.074 4.074 9 C -0.199 4.199 10 C 0.076 3.924 11 C -0.249 4.249 12 C -0.064 4.064 13 C -0.333 4.333 14 C -0.056 4.056 15 N -0.231 5.231 16 C 0.122 3.878 17 C -0.465 4.465 18 H 0.097 0.903 19 C -0.191 4.191 20 N -0.366 5.366 21 Si 0.787 3.213 22 H -0.184 1.184 23 H -0.187 1.187 24 H -0.194 1.194 25 H 0.101 0.899 26 H 0.125 0.875 27 H 0.107 0.893 28 H 0.187 0.813 29 H 0.173 0.827 30 H 0.183 0.817 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.155 0.845 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.699 -4.384 -3.364 12.939 hybrid contribution 0.435 -0.453 -0.064 0.631 sum -11.264 -4.837 -3.428 12.729 Atomic orbital electron populations 1.22034 0.71799 1.05411 1.04146 1.48584 1.06817 1.00745 1.64433 1.76622 1.02161 1.10354 1.21444 1.23633 0.94282 0.94833 0.98248 1.19076 0.93536 0.93390 1.13549 1.19189 0.89819 0.90917 1.00363 1.20318 1.01205 0.87371 1.09477 1.21193 0.90621 1.00676 0.94875 1.21264 0.97899 0.93589 1.07179 1.18323 0.90339 0.92327 0.91446 1.19593 0.94238 1.12289 0.98802 1.21226 0.93176 0.95955 0.96011 1.21527 0.97575 1.12162 1.02043 1.23034 0.99019 0.93711 0.89865 1.68705 1.04648 1.23642 1.26149 1.18832 0.89115 0.88201 0.91641 1.19650 0.97968 1.29192 0.99720 0.90300 1.26808 0.96215 0.94168 1.01913 1.70187 1.14570 1.22675 1.29217 0.85452 0.78892 0.79012 0.77964 1.18383 1.18738 1.19406 0.89856 0.87501 0.89278 0.81338 0.82679 0.81698 0.85667 0.85910 0.85498 0.84549 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.17 11.45 127.77 1.46 3.63 16 2 N -0.42 -13.90 4.07 -361.06 -1.47 -15.37 16 3 N -0.29 -11.68 12.46 -56.45 -0.70 -12.39 16 4 C 0.08 3.66 11.14 85.62 0.95 4.61 16 5 C -0.19 -7.90 4.74 -21.20 -0.10 -8.00 16 6 C 0.11 3.98 6.88 39.14 0.27 4.25 16 7 C -0.16 -4.44 10.01 22.45 0.22 -4.22 16 8 C -0.05 -1.44 10.00 22.24 0.22 -1.22 16 9 C -0.18 -6.29 9.73 22.55 0.22 -6.07 16 10 C 0.08 3.37 4.49 -19.84 -0.09 3.28 16 11 C -0.24 -11.63 5.25 -19.53 -0.10 -11.73 16 12 C -0.04 -1.70 9.88 22.68 0.22 -1.47 16 13 C -0.31 -13.16 10.10 22.48 0.23 -12.93 16 14 C 0.11 5.23 11.17 84.99 0.95 6.18 16 15 N -0.52 -28.56 7.85 -188.36 -1.48 -30.04 16 16 C 0.25 13.31 6.57 40.37 0.27 13.57 16 17 C -0.43 -23.48 8.02 23.32 0.19 -23.29 16 18 H 0.08 4.26 5.93 -2.91 -0.02 4.24 16 19 C 0.03 1.65 5.50 85.32 0.47 2.12 16 20 N -0.74 -40.10 11.46 21.86 0.25 -39.84 16 21 Si 0.97 39.98 29.56 68.60 2.03 42.01 16 22 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 23 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 25 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.17 7.71 8.06 -2.91 -0.02 7.68 16 29 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 30 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 31 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 32 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 33 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 34 H 0.14 5.71 8.06 -2.91 -0.02 5.69 16 35 H 0.28 13.65 8.29 -92.71 -0.77 12.88 16 Total: -1.00 -67.83 306.70 5.12 -62.71 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 1.11 Total: 24.22 kcal Atomic # 6 Polarization: -36.67 SS G_CDS: 5.38 Total: -31.29 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -3.40 Total: -97.64 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -67.83 5.12 -62.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241451796.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.562 kcal (2) G-P(sol) polarization free energy of solvation -67.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds