Wall clock time and date at job start Tue Mar 31 2020 01:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40024 * 125.97016 * 2 1 4 4 C 1.30215 * 109.72052 * 180.02562 * 3 2 1 5 5 C 1.41318 * 108.68495 * 0.02562 * 4 3 2 6 6 C 1.37191 * 125.96580 * 180.02562 * 2 1 3 7 7 C 1.39246 * 133.66431 * 359.97438 * 6 2 1 8 8 C 1.37745 * 120.13078 * 180.02562 * 7 6 2 9 9 C 1.38638 * 120.75053 * 359.69838 * 8 7 6 10 10 C 1.38684 * 120.39518 * 0.57825 * 9 8 7 11 11 C 1.48143 * 120.26134 * 179.72551 * 10 9 8 12 12 C 1.40155 * 120.83377 * 129.70280 * 11 10 9 13 13 C 1.38452 * 119.41289 * 180.02562 * 12 11 10 14 14 N 1.31499 * 121.16371 * 359.73215 * 13 12 11 15 15 C 1.33662 * 121.81968 * 0.53730 * 14 13 12 16 16 C 1.41421 * 119.77729 * 179.74566 * 15 14 13 17 17 H 1.08002 * 120.00335 * 179.72842 * 16 15 14 18 18 C 1.40037 * 119.99975 * 359.44620 * 16 15 14 19 19 N 1.30744 * 120.00050 * 0.27903 * 18 16 15 20 20 Si 1.86803 * 120.00055 * 180.27341 * 18 16 15 21 21 H 1.48498 * 109.46646 * 60.00652 * 20 18 16 22 22 H 1.48504 * 109.47036 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47374 * 300.00619 * 20 18 16 24 24 C 1.39435 * 120.83591 * 309.72213 * 11 10 9 25 25 H 1.08996 * 109.47686 * 89.96754 * 1 2 3 26 26 H 1.09002 * 109.47519 * 209.97578 * 1 2 3 27 27 H 1.09001 * 109.46645 * 329.97128 * 1 2 3 28 28 H 1.07995 * 125.65453 * 180.02562 * 4 3 2 29 29 H 1.07995 * 119.93231 * 0.02562 * 7 6 2 30 30 H 1.08000 * 119.62346 * 180.02562 * 8 7 6 31 31 H 1.07998 * 119.80201 * 180.28089 * 9 8 7 32 32 H 1.07995 * 120.29025 * 359.97438 * 12 11 10 33 33 H 1.08008 * 119.42065 * 179.97438 * 13 12 11 34 34 H 0.96991 * 119.99866 * 179.97438 * 19 18 16 35 35 H 1.08005 * 120.58823 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2874 1.1332 0.0000 4 6 3.5376 0.7689 -0.0005 5 6 3.5976 -0.6430 -0.0015 6 6 2.2707 -1.1104 -0.0005 7 6 2.0201 -2.4801 -0.0007 8 6 3.0675 -3.3747 -0.0007 9 6 4.3803 -2.9291 -0.0068 10 6 4.6603 -1.5708 -0.0010 11 6 6.0642 -1.0980 -0.0014 12 6 6.4979 -0.1358 -0.9236 13 6 7.8168 0.2847 -0.8981 14 7 8.6683 -0.1990 -0.0205 15 6 8.3077 -1.1216 0.8769 16 6 9.2606 -1.6159 1.7977 17 1 8.9721 -2.3583 2.5272 18 6 10.5796 -1.1472 1.7597 19 7 10.9289 -0.2486 0.8766 20 14 11.8401 -1.8058 2.9709 21 1 11.9759 -3.2740 2.7946 22 1 13.1513 -1.1537 2.7243 23 1 11.3950 -1.5127 4.3569 24 6 6.9875 -1.5993 0.9154 25 1 -0.3634 0.0006 -1.0276 26 1 -0.3634 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5143 28 1 4.3875 1.4352 -0.0003 29 1 1.0024 -2.8417 -0.0008 30 1 2.8637 -4.4353 -0.0012 31 1 5.1897 -3.6440 -0.0113 32 1 5.8095 0.2733 -1.6482 33 1 8.1512 1.0258 -1.6090 34 1 11.8425 0.0762 0.8505 35 1 6.6926 -2.3417 1.6423 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241451940.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:15 Heat of formation + Delta-G solvation = 123.405092 kcal Electronic energy + Delta-G solvation = -20140.010672 eV Core-core repulsion = 17104.200674 eV Total energy + Delta-G solvation = -3035.809998 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.20683 -38.27782 -36.76716 -33.94307 -33.35123 -31.78789 -30.06088 -29.58735 -28.47097 -26.53854 -25.64828 -23.30516 -22.03302 -21.47167 -21.03521 -19.81704 -17.56950 -16.70390 -16.37701 -15.45608 -15.38170 -15.04076 -14.58489 -14.29005 -14.06362 -13.86071 -13.50228 -13.01920 -12.76113 -12.61595 -12.31751 -12.16276 -11.65356 -11.48698 -11.30931 -11.17259 -10.84465 -10.76210 -10.64358 -10.41359 -10.05052 -9.75180 -9.36296 -8.53807 -8.16777 -7.68388 -7.59094 -7.39861 -6.41915 -4.54984 1.02559 1.72146 2.51975 2.72307 2.75708 2.94598 3.07926 3.09999 3.18709 3.93438 4.09027 4.53319 4.73271 4.77602 5.04268 5.09558 5.26159 5.28844 5.36452 5.48547 5.51670 5.83244 5.94377 6.01465 6.07158 6.17747 6.46449 6.58313 6.65901 6.68222 6.76974 6.92868 7.01076 7.11456 7.22471 7.30090 7.50335 7.66245 7.80101 7.96448 8.19958 8.62736 8.88669 10.09040 10.29927 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030203 B = 0.004104 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.850054 B = 6820.795102 C = 7271.084411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.417 5.417 3 N -0.270 5.270 4 C 0.090 3.910 5 C -0.168 4.168 6 C 0.126 3.874 7 C -0.164 4.164 8 C -0.061 4.061 9 C -0.160 4.160 10 C 0.068 3.932 11 C -0.007 4.007 12 C -0.299 4.299 13 C 0.125 3.875 14 N -0.482 5.482 15 C 0.255 3.745 16 C -0.431 4.431 17 H 0.083 0.917 18 C 0.069 3.931 19 N -0.715 5.715 20 Si 0.907 3.093 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.265 1.265 24 C -0.247 4.247 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.194 0.806 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.274 0.726 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.854 -2.838 -1.205 14.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.206 5.206 3 N -0.083 5.083 4 C -0.105 4.105 5 C -0.175 4.175 6 C 0.011 3.989 7 C -0.186 4.186 8 C -0.082 4.082 9 C -0.179 4.179 10 C 0.065 3.935 11 C -0.013 4.013 12 C -0.323 4.323 13 C -0.040 4.040 14 N -0.195 5.195 15 C 0.131 3.869 16 C -0.463 4.463 17 H 0.101 0.899 18 C -0.156 4.156 19 N -0.336 5.336 20 Si 0.731 3.269 21 H -0.189 1.189 22 H -0.202 1.202 23 H -0.189 1.189 24 C -0.270 4.270 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.210 0.790 29 H 0.136 0.864 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.114 0.886 33 H 0.137 0.863 34 H 0.085 0.915 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.813 -1.392 -1.248 13.939 hybrid contribution 0.065 -1.219 0.454 1.302 sum -13.748 -2.611 -0.794 14.016 Atomic orbital electron populations 1.21625 0.74568 1.03796 1.02548 1.48224 1.05449 1.01603 1.65322 1.76711 1.02165 1.08906 1.20484 1.23992 0.94564 0.94185 0.97723 1.18852 0.92288 0.93599 1.12780 1.18806 0.90420 0.89628 1.00019 1.19878 0.99372 0.88829 1.10570 1.20854 0.91985 0.98897 0.96438 1.21045 0.96536 0.94632 1.05728 1.18609 0.91691 0.91692 0.91510 1.18565 0.89924 0.96402 0.96446 1.21308 0.98133 1.06997 1.05827 1.22454 0.89477 0.96390 0.95696 1.68731 1.33869 1.12048 1.04856 1.18527 0.89481 0.88439 0.90498 1.19596 0.93177 1.20072 1.13413 0.89851 1.26060 0.99529 0.94242 0.95776 1.70119 1.18266 1.18588 1.26635 0.86397 0.79281 0.80027 0.81183 1.18913 1.20208 1.18924 1.21845 0.94889 1.06741 1.03543 0.91651 0.90140 0.89764 0.78955 0.86402 0.85528 0.85322 0.88591 0.86250 0.91522 0.88011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.11 11.45 59.85 0.69 1.80 16 2 N -0.42 -6.22 4.07 -65.48 -0.27 -6.49 16 3 N -0.27 -4.53 12.45 30.83 0.38 -4.15 16 4 C 0.09 1.57 11.25 -17.07 -0.19 1.38 16 5 C -0.17 -3.03 5.90 -106.73 -0.63 -3.66 16 6 C 0.13 2.02 6.88 -84.17 -0.58 1.44 16 7 C -0.16 -2.21 10.01 -39.39 -0.39 -2.61 16 8 C -0.06 -0.82 10.00 -39.61 -0.40 -1.22 16 9 C -0.16 -2.63 9.52 -39.27 -0.37 -3.00 16 10 C 0.07 1.29 5.53 -104.59 -0.58 0.71 16 11 C -0.01 -0.16 5.42 -104.67 -0.57 -0.72 16 12 C -0.30 -6.51 8.88 -38.78 -0.34 -6.85 16 13 C 0.13 2.95 11.16 -17.62 -0.20 2.76 16 14 N -0.48 -13.05 7.85 -11.22 -0.09 -13.13 16 15 C 0.26 6.83 6.55 -85.02 -0.56 6.27 16 16 C -0.43 -11.35 9.14 -37.70 -0.34 -11.69 16 17 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 18 C 0.07 1.74 5.50 -17.34 -0.10 1.65 16 19 N -0.71 -18.82 11.46 55.55 0.64 -18.18 16 20 Si 0.91 18.34 29.56 -169.99 -5.02 13.31 16 21 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 24 C -0.25 -5.91 9.37 -38.30 -0.36 -6.27 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.19 3.13 7.68 -52.49 -0.40 2.73 16 29 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 31 H 0.13 2.04 8.05 -52.49 -0.42 1.62 16 32 H 0.10 1.89 7.90 -52.49 -0.41 1.48 16 33 H 0.12 2.50 8.06 -52.48 -0.42 2.08 16 34 H 0.27 6.54 8.29 -40.82 -0.34 6.20 16 35 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 LS Contribution 309.71 15.07 4.67 4.67 Total: -1.00 -30.63 309.71 -8.36 -38.99 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -3.75 Total: 5.01 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -4.92 Total: -20.02 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.67 Total: -41.96 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.02 Total: 13.31 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.63 -8.36 -38.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241451940.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.395 kcal (2) G-P(sol) polarization free energy of solvation -30.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds