Wall clock time and date at job start Tue Mar 31 2020 01:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40024 * 125.97016 * 2 1 4 4 C 1.30215 * 109.72052 * 180.02562 * 3 2 1 5 5 C 1.41318 * 108.68495 * 0.02562 * 4 3 2 6 6 C 1.37191 * 125.96580 * 180.02562 * 2 1 3 7 7 C 1.39246 * 133.66431 * 359.97438 * 6 2 1 8 8 C 1.37745 * 120.13078 * 180.02562 * 7 6 2 9 9 C 1.38638 * 120.75053 * 359.69838 * 8 7 6 10 10 C 1.38684 * 120.39518 * 0.57825 * 9 8 7 11 11 C 1.48143 * 120.26134 * 179.72551 * 10 9 8 12 12 C 1.40155 * 120.83377 * 129.70280 * 11 10 9 13 13 C 1.38452 * 119.41289 * 180.02562 * 12 11 10 14 14 N 1.31499 * 121.16371 * 359.73215 * 13 12 11 15 15 C 1.33662 * 121.81968 * 0.53730 * 14 13 12 16 16 C 1.41421 * 119.77729 * 179.74566 * 15 14 13 17 17 H 1.08002 * 120.00335 * 179.72842 * 16 15 14 18 18 C 1.40037 * 119.99975 * 359.44620 * 16 15 14 19 19 N 1.30744 * 120.00050 * 0.27903 * 18 16 15 20 20 Si 1.86803 * 120.00055 * 180.27341 * 18 16 15 21 21 H 1.48498 * 109.46646 * 60.00652 * 20 18 16 22 22 H 1.48504 * 109.47036 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47374 * 300.00619 * 20 18 16 24 24 C 1.39435 * 120.83591 * 309.72213 * 11 10 9 25 25 H 1.08996 * 109.47686 * 89.96754 * 1 2 3 26 26 H 1.09002 * 109.47519 * 209.97578 * 1 2 3 27 27 H 1.09001 * 109.46645 * 329.97128 * 1 2 3 28 28 H 1.07995 * 125.65453 * 180.02562 * 4 3 2 29 29 H 1.07995 * 119.93231 * 0.02562 * 7 6 2 30 30 H 1.08000 * 119.62346 * 180.02562 * 8 7 6 31 31 H 1.07998 * 119.80201 * 180.28089 * 9 8 7 32 32 H 1.07995 * 120.29025 * 359.97438 * 12 11 10 33 33 H 1.08008 * 119.42065 * 179.97438 * 13 12 11 34 34 H 0.96991 * 119.99866 * 179.97438 * 19 18 16 35 35 H 1.08005 * 120.58823 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2874 1.1332 0.0000 4 6 3.5376 0.7689 -0.0005 5 6 3.5976 -0.6430 -0.0015 6 6 2.2707 -1.1104 -0.0005 7 6 2.0201 -2.4801 -0.0007 8 6 3.0675 -3.3747 -0.0007 9 6 4.3803 -2.9291 -0.0068 10 6 4.6603 -1.5708 -0.0010 11 6 6.0642 -1.0980 -0.0014 12 6 6.4979 -0.1358 -0.9236 13 6 7.8168 0.2847 -0.8981 14 7 8.6683 -0.1990 -0.0205 15 6 8.3077 -1.1216 0.8769 16 6 9.2606 -1.6159 1.7977 17 1 8.9721 -2.3583 2.5272 18 6 10.5796 -1.1472 1.7597 19 7 10.9289 -0.2486 0.8766 20 14 11.8401 -1.8058 2.9709 21 1 11.9759 -3.2740 2.7946 22 1 13.1513 -1.1537 2.7243 23 1 11.3950 -1.5127 4.3569 24 6 6.9875 -1.5993 0.9154 25 1 -0.3634 0.0006 -1.0276 26 1 -0.3634 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5143 28 1 4.3875 1.4352 -0.0003 29 1 1.0024 -2.8417 -0.0008 30 1 2.8637 -4.4353 -0.0012 31 1 5.1897 -3.6440 -0.0113 32 1 5.8095 0.2733 -1.6482 33 1 8.1512 1.0258 -1.6090 34 1 11.8425 0.0762 0.8505 35 1 6.6926 -2.3417 1.6423 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241451940.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:13 Heat of formation + Delta-G solvation = 106.323351 kcal Electronic energy + Delta-G solvation = -20140.751392 eV Core-core repulsion = 17104.200674 eV Total energy + Delta-G solvation = -3036.550717 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.41586 -40.04991 -38.05501 -35.60518 -34.71790 -33.23132 -31.91384 -30.81122 -29.92604 -27.74988 -27.31237 -24.72855 -23.52719 -22.89874 -22.62424 -21.20886 -19.18342 -17.96323 -17.77467 -17.09094 -16.54156 -16.39795 -16.14042 -15.91590 -15.64552 -15.22341 -14.66511 -14.38687 -14.11234 -13.96272 -13.82752 -13.44396 -12.99753 -12.86826 -12.85369 -12.67972 -12.56776 -12.20025 -12.03466 -11.85707 -11.72416 -11.23483 -11.00221 -10.06388 -9.58212 -9.55149 -9.47544 -8.67550 -8.27601 -6.50980 -0.23897 0.49024 0.91533 1.14771 1.42140 1.50045 1.53577 1.54544 1.59264 2.24524 2.78794 2.91033 3.45806 3.63946 3.90357 3.94897 4.08604 4.20413 4.24127 4.33350 4.44758 4.48812 4.65361 4.67232 4.71559 4.84373 4.87200 4.98036 5.03559 5.21946 5.37100 5.41388 5.54635 5.59242 5.61375 5.84750 5.91536 6.14201 6.15310 6.28914 6.57199 6.73927 6.96297 8.19994 8.46913 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030203 B = 0.004104 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.850054 B = 6820.795102 C = 7271.084411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.412 5.412 3 N -0.280 5.280 4 C 0.069 3.931 5 C -0.189 4.189 6 C 0.114 3.886 7 C -0.143 4.143 8 C -0.056 4.056 9 C -0.159 4.159 10 C 0.028 3.972 11 C 0.004 3.996 12 C -0.290 4.290 13 C 0.108 3.892 14 N -0.520 5.520 15 C 0.226 3.774 16 C -0.470 4.470 17 H 0.089 0.911 18 C 0.025 3.975 19 N -0.757 5.757 20 Si 0.987 3.013 21 H -0.257 1.257 22 H -0.269 1.269 23 H -0.259 1.259 24 C -0.266 4.266 25 H 0.083 0.917 26 H 0.109 0.891 27 H 0.092 0.908 28 H 0.189 0.811 29 H 0.162 0.838 30 H 0.170 0.830 31 H 0.127 0.873 32 H 0.116 0.884 33 H 0.139 0.861 34 H 0.279 0.721 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.583 -4.536 -0.978 17.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.201 5.201 3 N -0.094 5.094 4 C -0.125 4.125 5 C -0.196 4.196 6 C -0.002 4.002 7 C -0.164 4.164 8 C -0.077 4.077 9 C -0.179 4.179 10 C 0.025 3.975 11 C -0.002 4.002 12 C -0.313 4.313 13 C -0.056 4.056 14 N -0.233 5.233 15 C 0.101 3.899 16 C -0.501 4.501 17 H 0.107 0.893 18 C -0.197 4.197 19 N -0.379 5.379 20 Si 0.806 3.194 21 H -0.181 1.181 22 H -0.193 1.193 23 H -0.184 1.184 24 C -0.289 4.289 25 H 0.101 0.899 26 H 0.128 0.872 27 H 0.111 0.889 28 H 0.206 0.794 29 H 0.180 0.820 30 H 0.187 0.813 31 H 0.145 0.855 32 H 0.134 0.866 33 H 0.156 0.844 34 H 0.090 0.910 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.581 -3.076 -1.037 16.896 hybrid contribution 0.597 -0.691 0.284 0.956 sum -15.984 -3.766 -0.754 16.439 Atomic orbital electron populations 1.22101 0.71461 1.05763 1.04332 1.48652 1.07016 1.00639 1.63803 1.76627 1.02188 1.10288 1.20280 1.23973 0.94936 0.94371 0.99269 1.18988 0.93348 0.93686 1.13618 1.19143 0.89691 0.90982 1.00395 1.20413 1.01529 0.87372 1.07105 1.21267 0.90294 1.01138 0.94979 1.21237 0.98381 0.93490 1.04761 1.18496 0.90058 0.93162 0.95798 1.18861 0.91534 0.95046 0.94784 1.21536 0.97623 1.06389 1.05720 1.22867 0.90208 0.96841 0.95685 1.68678 1.35422 1.13176 1.06061 1.18947 0.90920 0.89003 0.91015 1.19967 0.94452 1.21334 1.14365 0.89291 1.26986 1.01157 0.94063 0.97465 1.70224 1.19044 1.20033 1.28559 0.85205 0.76341 0.79453 0.78354 1.18137 1.19299 1.18370 1.21925 0.94642 1.07679 1.04649 0.89879 0.87219 0.88885 0.79434 0.82008 0.81285 0.85542 0.86552 0.84361 0.91043 0.87452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.56 11.45 127.77 1.46 3.02 16 2 N -0.41 -11.16 4.07 -361.08 -1.47 -12.64 16 3 N -0.28 -9.14 12.45 -56.38 -0.70 -9.85 16 4 C 0.07 2.40 11.25 85.69 0.96 3.37 16 5 C -0.19 -6.69 5.90 -21.23 -0.13 -6.81 16 6 C 0.11 3.32 6.88 39.14 0.27 3.59 16 7 C -0.14 -3.15 10.01 22.40 0.22 -2.93 16 8 C -0.06 -1.28 10.00 22.25 0.22 -1.06 16 9 C -0.16 -4.98 9.52 22.47 0.21 -4.77 16 10 C 0.03 1.05 5.53 -19.85 -0.11 0.94 16 11 C 0.00 0.19 5.42 -19.89 -0.11 0.08 16 12 C -0.29 -12.94 8.88 22.79 0.20 -12.73 16 13 C 0.11 5.29 11.16 84.79 0.95 6.24 16 14 N -0.52 -29.52 7.85 -189.40 -1.49 -31.01 16 15 C 0.23 12.72 6.55 40.19 0.26 12.98 16 16 C -0.47 -25.83 9.14 23.49 0.21 -25.61 16 17 H 0.09 4.55 7.85 -2.91 -0.02 4.52 16 18 C 0.02 1.29 5.50 85.29 0.47 1.75 16 19 N -0.76 -41.42 11.46 21.84 0.25 -41.17 16 20 Si 0.99 38.37 29.56 68.60 2.03 40.40 16 21 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 22 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 24 C -0.27 -13.30 9.37 23.10 0.22 -13.09 16 25 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.19 6.41 7.68 -2.91 -0.02 6.39 16 29 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 30 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 31 H 0.13 3.92 8.05 -2.91 -0.02 3.90 16 32 H 0.12 4.64 7.90 -2.91 -0.02 4.61 16 33 H 0.14 6.00 8.06 -2.91 -0.02 5.98 16 34 H 0.28 13.81 8.29 -92.71 -0.77 13.04 16 35 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -70.24 309.71 5.05 -65.19 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 1.11 Total: 24.11 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 5.33 Total: -35.04 kcal Atomic # 7 Polarization: -91.25 SS G_CDS: -3.41 Total: -94.66 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Total: -70.24 5.05 -65.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241451940.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.508 kcal (2) G-P(sol) polarization free energy of solvation -70.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds