Wall clock time and date at job start Tue Mar 31 2020 01:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39868 * 125.44832 * 2 1 4 4 C 1.30247 * 110.04050 * 180.02562 * 3 2 1 5 5 C 1.45979 * 107.73779 * 359.97438 * 4 3 2 6 6 C 1.39999 * 133.89444 * 180.02562 * 5 4 3 7 7 C 1.36542 * 120.04646 * 179.97438 * 6 5 4 8 8 C 1.38693 * 120.78877 * 0.02562 * 7 6 5 9 9 C 1.38815 * 120.51478 * 0.02562 * 8 7 6 10 10 C 1.48216 * 120.25761 * 179.97438 * 9 8 7 11 11 C 1.38985 * 119.62349 * 55.01817 * 10 9 8 12 12 C 1.40823 * 118.75665 * 180.02562 * 11 10 9 13 13 C 1.41526 * 120.98255 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99145 * 210.54973 * 13 12 11 15 15 C 1.40034 * 120.00207 * 30.54955 * 13 12 11 16 16 N 1.30732 * 120.00380 * 11.29262 * 15 13 12 17 17 Si 1.86804 * 120.00086 * 191.29528 * 15 13 12 18 18 H 1.48496 * 109.47021 * 59.99725 * 17 15 13 19 19 H 1.48495 * 109.47255 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.47011 * 299.99998 * 17 15 13 21 21 C 1.41163 * 118.02796 * 0.02577 * 12 11 10 22 22 C 1.37722 * 119.09333 * 359.97438 * 21 12 11 23 23 N 1.31923 * 121.16703 * 359.97438 * 22 21 12 24 24 C 1.36775 * 125.44311 * 180.33886 * 2 1 3 25 25 H 1.09012 * 109.46968 * 93.76825 * 1 2 3 26 26 H 1.09005 * 109.47283 * 213.76298 * 1 2 3 27 27 H 1.08995 * 109.47317 * 333.77219 * 1 2 3 28 28 H 1.07996 * 126.12997 * 180.02562 * 4 3 2 29 29 H 1.07998 * 119.97563 * 0.02562 * 6 5 4 30 30 H 1.08005 * 119.60722 * 180.02562 * 7 6 5 31 31 H 1.07994 * 119.73876 * 180.02562 * 8 7 6 32 32 H 1.08001 * 120.62531 * 0.02562 * 11 10 9 33 33 H 0.97000 * 120.00462 * 179.97438 * 16 15 13 34 34 H 1.08004 * 120.45065 * 179.97438 * 21 12 11 35 35 H 1.08002 * 119.41351 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2762 1.1394 0.0000 4 6 3.5319 0.7934 -0.0005 5 6 3.5912 -0.6652 -0.0003 6 6 4.6387 -1.5941 -0.0002 7 6 4.3660 -2.9320 0.0005 8 6 3.0568 -3.3897 0.0006 9 6 1.9968 -2.4934 -0.0005 10 6 0.5999 -2.9889 -0.0009 11 6 0.1834 -3.8707 0.9893 12 6 -1.1476 -4.3303 0.9711 13 6 -1.6217 -5.2285 1.9567 14 1 -2.3981 -5.9382 1.7117 15 6 -1.0844 -5.1969 3.2495 16 7 -0.3120 -4.2065 3.6124 17 14 -1.4711 -6.5700 4.4556 18 1 -0.9970 -7.8636 3.9014 19 1 -0.7863 -6.3029 5.7459 20 1 -2.9379 -6.6347 4.6783 21 6 -1.9948 -3.8686 -0.0593 22 6 -1.4927 -2.9946 -0.9979 23 7 -0.2397 -2.5849 -0.9479 24 6 2.2582 -1.1143 -0.0066 25 1 -0.3633 -0.0675 -1.0256 26 1 -0.3634 -0.8544 0.5712 27 1 -0.3634 0.9218 0.4541 28 1 4.3775 1.4651 -0.0003 29 1 5.6631 -1.2521 0.0001 30 1 5.1796 -3.6423 0.0010 31 1 2.8606 -4.4517 0.0017 32 1 0.8677 -4.1974 1.7584 33 1 0.0599 -4.1844 4.5080 34 1 -3.0226 -4.1962 -0.1109 35 1 -2.1362 -2.6384 -1.7887 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241453540.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:17 Heat of formation + Delta-G solvation = 113.900734 kcal Electronic energy + Delta-G solvation = -20827.897010 eV Core-core repulsion = 17791.674873 eV Total energy + Delta-G solvation = -3036.222137 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.85994 -38.46116 -36.67777 -34.26628 -33.11509 -31.13443 -30.65482 -29.44482 -28.35726 -26.00870 -25.88035 -23.14459 -21.99681 -21.31033 -21.23689 -19.67306 -17.63381 -16.59713 -16.15231 -15.59843 -15.03561 -14.85218 -14.45480 -14.34069 -14.18716 -13.80426 -13.45313 -12.75667 -12.67276 -12.57418 -12.44760 -11.89597 -11.60412 -11.36367 -11.27667 -11.18441 -10.93217 -10.91974 -10.47108 -10.35735 -9.97188 -9.59899 -9.47348 -8.35662 -8.10840 -8.06151 -7.88578 -7.11425 -6.90333 -4.70291 1.26187 1.96289 2.51775 2.71887 2.86454 2.91370 2.98145 3.00126 3.14352 3.80434 4.19507 4.53397 4.83333 4.92548 5.10398 5.28722 5.45793 5.51104 5.65898 5.75757 5.88819 5.89741 6.06976 6.16329 6.23627 6.31128 6.60764 6.68528 6.73373 6.81378 6.86669 6.97854 7.04169 7.15541 7.24964 7.30423 7.48932 7.74872 7.96973 8.04062 8.31798 8.60001 8.65151 9.39089 10.03071 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019423 B = 0.005752 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.216422 B = 4866.662419 C = 5415.552809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.389 5.389 3 N -0.262 5.262 4 C 0.058 3.942 5 C -0.190 4.190 6 C -0.055 4.055 7 C -0.157 4.157 8 C -0.068 4.068 9 C -0.020 4.020 10 C 0.133 3.867 11 C -0.176 4.176 12 C 0.129 3.871 13 C -0.460 4.460 14 H 0.082 0.918 15 C 0.077 3.923 16 N -0.791 5.791 17 Si 0.914 3.086 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.264 1.264 21 C -0.267 4.267 22 C 0.098 3.902 23 N -0.561 5.561 24 C 0.154 3.846 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.191 0.809 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.285 0.715 34 H 0.102 0.898 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.325 3.069 -2.660 7.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.176 5.176 3 N -0.075 5.075 4 C -0.138 4.138 5 C -0.198 4.198 6 C -0.075 4.075 7 C -0.176 4.176 8 C -0.090 4.090 9 C -0.025 4.025 10 C 0.002 3.998 11 C -0.199 4.199 12 C 0.121 3.879 13 C -0.491 4.491 14 H 0.100 0.900 15 C -0.142 4.142 16 N -0.417 5.417 17 Si 0.738 3.262 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.189 1.189 21 C -0.290 4.290 22 C -0.058 4.058 23 N -0.276 5.276 24 C 0.038 3.962 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.089 0.911 28 H 0.208 0.792 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.717 4.774 -3.094 8.065 hybrid contribution -0.147 -1.839 1.329 2.273 sum 5.571 2.935 -1.766 6.540 Atomic orbital electron populations 1.21906 0.73460 1.03095 1.03593 1.48020 1.06118 1.00679 1.62747 1.76475 1.02706 1.09909 1.18399 1.24896 0.94592 0.93003 1.01320 1.19834 0.92978 0.93267 1.13739 1.20181 0.97130 0.92018 0.98198 1.20483 0.96261 0.95233 1.05635 1.21029 0.91228 0.99152 0.97571 1.17723 0.92863 0.88435 1.03448 1.19179 0.91127 0.96380 0.93121 1.22176 0.96891 1.01357 0.99432 1.17783 0.90339 0.89273 0.90501 1.19544 1.18986 1.16442 0.94120 0.90011 1.25939 0.93071 0.95796 0.99432 1.69714 1.24280 1.27352 1.20340 0.86271 0.79744 0.81394 0.78820 1.18668 1.20171 1.18883 1.21995 0.99615 1.05556 1.01818 1.21846 0.91546 0.95432 0.96930 1.67521 1.04275 1.29903 1.25852 1.18662 0.90098 0.88887 0.98561 0.90584 0.89252 0.91105 0.79206 0.86089 0.85947 0.85430 0.85658 0.90434 0.87964 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.27 9.76 59.85 0.58 2.85 16 2 N -0.39 -7.77 4.04 -65.27 -0.26 -8.04 16 3 N -0.26 -4.77 12.40 31.88 0.40 -4.37 16 4 C 0.06 0.90 12.29 -15.12 -0.19 0.72 16 5 C -0.19 -3.30 6.36 -105.22 -0.67 -3.97 16 6 C -0.05 -0.80 10.05 -39.53 -0.40 -1.20 16 7 C -0.16 -2.35 9.95 -40.03 -0.40 -2.75 16 8 C -0.07 -1.24 9.55 -39.20 -0.37 -1.61 16 9 C -0.02 -0.42 5.56 -104.78 -0.58 -1.00 16 10 C 0.13 3.06 4.74 -83.05 -0.39 2.67 16 11 C -0.18 -4.35 8.26 -38.33 -0.32 -4.67 16 12 C 0.13 3.25 5.54 -106.56 -0.59 2.66 16 13 C -0.46 -11.48 9.11 -37.66 -0.34 -11.83 16 14 H 0.08 1.95 7.87 -52.48 -0.41 1.54 16 15 C 0.08 1.83 5.26 -17.35 -0.09 1.74 16 16 N -0.79 -19.64 11.06 55.55 0.61 -19.02 16 17 Si 0.91 17.80 29.57 -169.99 -5.03 12.78 16 18 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 19 H -0.28 -5.30 7.11 56.52 0.40 -4.89 16 20 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 21 C -0.27 -6.11 9.90 -38.66 -0.38 -6.50 16 22 C 0.10 2.10 11.15 -17.70 -0.20 1.90 16 23 N -0.56 -12.63 7.68 -9.96 -0.08 -12.70 16 24 C 0.15 3.15 6.80 -83.94 -0.57 2.58 16 25 H 0.08 1.40 7.77 -51.92 -0.40 0.99 16 26 H 0.09 1.91 6.02 -51.93 -0.31 1.59 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.19 2.00 8.06 -52.49 -0.42 1.57 16 29 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 30 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 31 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 32 H 0.13 3.22 6.50 -52.49 -0.34 2.88 16 33 H 0.28 6.50 8.29 -40.82 -0.34 6.17 16 34 H 0.10 2.17 8.06 -52.48 -0.42 1.74 16 35 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 303.29 15.07 4.57 4.57 Total: -1.00 -28.47 303.29 -8.26 -36.73 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -3.56 Total: 8.48 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -4.91 Total: -18.42 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.67 Total: -44.14 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.47 -8.26 -36.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241453540.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.626 kcal (2) G-P(sol) polarization free energy of solvation -28.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds