Wall clock time and date at job start Tue Mar 31 2020 01:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39868 * 125.44832 * 2 1 4 4 C 1.30247 * 110.04050 * 180.02562 * 3 2 1 5 5 C 1.45979 * 107.73779 * 359.97438 * 4 3 2 6 6 C 1.39999 * 133.89444 * 180.02562 * 5 4 3 7 7 C 1.36542 * 120.04646 * 179.97438 * 6 5 4 8 8 C 1.38693 * 120.78877 * 0.02562 * 7 6 5 9 9 C 1.38815 * 120.51478 * 0.02562 * 8 7 6 10 10 C 1.48216 * 120.25761 * 179.97438 * 9 8 7 11 11 C 1.38985 * 119.62349 * 55.01817 * 10 9 8 12 12 C 1.40823 * 118.75665 * 180.02562 * 11 10 9 13 13 C 1.41526 * 120.98255 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99145 * 210.54973 * 13 12 11 15 15 C 1.40034 * 120.00207 * 30.54955 * 13 12 11 16 16 N 1.30732 * 120.00380 * 11.29262 * 15 13 12 17 17 Si 1.86804 * 120.00086 * 191.29528 * 15 13 12 18 18 H 1.48496 * 109.47021 * 59.99725 * 17 15 13 19 19 H 1.48495 * 109.47255 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.47011 * 299.99998 * 17 15 13 21 21 C 1.41163 * 118.02796 * 0.02577 * 12 11 10 22 22 C 1.37722 * 119.09333 * 359.97438 * 21 12 11 23 23 N 1.31923 * 121.16703 * 359.97438 * 22 21 12 24 24 C 1.36775 * 125.44311 * 180.33886 * 2 1 3 25 25 H 1.09012 * 109.46968 * 93.76825 * 1 2 3 26 26 H 1.09005 * 109.47283 * 213.76298 * 1 2 3 27 27 H 1.08995 * 109.47317 * 333.77219 * 1 2 3 28 28 H 1.07996 * 126.12997 * 180.02562 * 4 3 2 29 29 H 1.07998 * 119.97563 * 0.02562 * 6 5 4 30 30 H 1.08005 * 119.60722 * 180.02562 * 7 6 5 31 31 H 1.07994 * 119.73876 * 180.02562 * 8 7 6 32 32 H 1.08001 * 120.62531 * 0.02562 * 11 10 9 33 33 H 0.97000 * 120.00462 * 179.97438 * 16 15 13 34 34 H 1.08004 * 120.45065 * 179.97438 * 21 12 11 35 35 H 1.08002 * 119.41351 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2762 1.1394 0.0000 4 6 3.5319 0.7934 -0.0005 5 6 3.5912 -0.6652 -0.0003 6 6 4.6387 -1.5941 -0.0002 7 6 4.3660 -2.9320 0.0005 8 6 3.0568 -3.3897 0.0006 9 6 1.9968 -2.4934 -0.0005 10 6 0.5999 -2.9889 -0.0009 11 6 0.1834 -3.8707 0.9893 12 6 -1.1476 -4.3303 0.9711 13 6 -1.6217 -5.2285 1.9567 14 1 -2.3981 -5.9382 1.7117 15 6 -1.0844 -5.1969 3.2495 16 7 -0.3120 -4.2065 3.6124 17 14 -1.4711 -6.5700 4.4556 18 1 -0.9970 -7.8636 3.9014 19 1 -0.7863 -6.3029 5.7459 20 1 -2.9379 -6.6347 4.6783 21 6 -1.9948 -3.8686 -0.0593 22 6 -1.4927 -2.9946 -0.9979 23 7 -0.2397 -2.5849 -0.9479 24 6 2.2582 -1.1143 -0.0066 25 1 -0.3633 -0.0675 -1.0256 26 1 -0.3634 -0.8544 0.5712 27 1 -0.3634 0.9218 0.4541 28 1 4.3775 1.4651 -0.0003 29 1 5.6631 -1.2521 0.0001 30 1 5.1796 -3.6423 0.0010 31 1 2.8606 -4.4517 0.0017 32 1 0.8677 -4.1974 1.7584 33 1 0.0599 -4.1844 4.5080 34 1 -3.0226 -4.1962 -0.1109 35 1 -2.1362 -2.6384 -1.7887 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241453540.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:16 Heat of formation + Delta-G solvation = 98.594136 kcal Electronic energy + Delta-G solvation = -20828.560754 eV Core-core repulsion = 17791.674873 eV Total energy + Delta-G solvation = -3036.885881 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.20797 -40.19388 -38.02009 -36.05317 -34.56362 -32.68394 -32.42535 -30.78199 -29.91952 -27.85372 -27.30156 -24.61951 -23.64449 -22.82051 -22.71837 -21.14300 -19.34071 -17.92769 -17.71061 -17.27010 -16.48892 -16.27557 -16.19025 -15.96368 -15.72506 -15.19109 -14.85609 -14.43578 -14.20894 -14.07733 -13.90105 -13.44496 -13.22196 -12.96252 -12.79204 -12.58907 -12.53577 -12.34607 -11.99406 -11.82986 -11.66693 -11.25105 -10.95577 -9.99800 -9.90734 -9.74805 -9.44274 -8.70108 -8.56914 -6.60639 -0.09301 0.58217 0.85913 0.95644 1.36717 1.48519 1.50495 1.51292 1.62261 2.16364 2.70938 2.89663 3.49167 3.61223 3.61781 3.73471 4.05574 4.13985 4.33873 4.36811 4.39298 4.50950 4.65779 4.71666 4.81609 4.93098 4.94401 4.99758 5.01315 5.18792 5.36421 5.47634 5.52188 5.61291 5.63813 5.89038 5.97590 6.09786 6.15730 6.46329 6.71977 6.75276 6.78691 7.60895 8.25485 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019423 B = 0.005752 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.216422 B = 4866.662419 C = 5415.552809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.132 3.868 2 N -0.413 5.413 3 N -0.289 5.289 4 C 0.084 3.916 5 C -0.204 4.204 6 C -0.031 4.031 7 C -0.157 4.157 8 C -0.069 4.069 9 C -0.070 4.070 10 C 0.141 3.859 11 C -0.200 4.200 12 C 0.102 3.898 13 C -0.492 4.492 14 H 0.084 0.916 15 C 0.038 3.962 16 N -0.825 5.825 17 Si 0.986 3.014 18 H -0.257 1.257 19 H -0.269 1.269 20 H -0.258 1.258 21 C -0.281 4.281 22 C 0.099 3.901 23 N -0.564 5.564 24 C 0.125 3.875 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.245 0.755 29 H 0.173 0.827 30 H 0.163 0.837 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.289 0.711 34 H 0.115 0.885 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.773 3.590 -2.770 9.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.200 5.200 3 N -0.101 5.101 4 C -0.113 4.113 5 C -0.212 4.212 6 C -0.051 4.051 7 C -0.177 4.177 8 C -0.091 4.091 9 C -0.075 4.075 10 C 0.010 3.990 11 C -0.222 4.222 12 C 0.094 3.906 13 C -0.523 4.523 14 H 0.102 0.898 15 C -0.178 4.178 16 N -0.451 5.451 17 Si 0.807 3.193 18 H -0.181 1.181 19 H -0.194 1.194 20 H -0.182 1.182 21 C -0.303 4.303 22 C -0.056 4.056 23 N -0.279 5.279 24 C 0.009 3.991 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.261 0.739 29 H 0.191 0.809 30 H 0.180 0.820 31 H 0.142 0.858 32 H 0.124 0.876 33 H 0.100 0.900 34 H 0.133 0.867 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.153 5.298 -3.223 10.243 hybrid contribution -0.752 -1.911 1.270 2.414 sum 7.402 3.387 -1.952 8.371 Atomic orbital electron populations 1.21660 0.74077 1.02395 1.02875 1.48116 1.06250 1.01237 1.64381 1.76459 1.03828 1.09548 1.20245 1.25802 0.94955 0.92828 0.97684 1.20321 0.92310 0.94690 1.13859 1.20770 0.98808 0.91166 0.94374 1.20909 0.95594 0.96583 1.04564 1.21272 0.92404 0.98796 0.96608 1.17854 0.92266 0.89712 1.07683 1.19514 0.92497 0.94936 0.92023 1.22048 0.96711 1.03423 1.00067 1.18179 0.91024 0.89912 0.91490 1.19829 1.20078 1.17269 0.95155 0.89791 1.26806 0.92434 0.97839 1.00767 1.69804 1.25230 1.29019 1.21002 0.85182 0.79714 0.78051 0.76402 1.18131 1.19352 1.18235 1.22198 1.00122 1.06166 1.01847 1.22370 0.91681 0.94367 0.97136 1.67658 1.04672 1.29784 1.25792 1.18989 0.91984 0.88713 0.99425 0.90864 0.92626 0.89364 0.73909 0.80950 0.81961 0.85774 0.87591 0.90004 0.86691 0.82567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.14 9.76 127.77 1.25 6.39 16 2 N -0.41 -16.64 4.04 -360.41 -1.46 -18.10 16 3 N -0.29 -10.10 12.40 -53.05 -0.66 -10.76 16 4 C 0.08 2.31 12.29 86.93 1.07 3.37 16 5 C -0.20 -6.52 6.36 -20.25 -0.13 -6.65 16 6 C -0.03 -0.77 10.05 22.30 0.22 -0.55 16 7 C -0.16 -4.24 9.95 21.98 0.22 -4.02 16 8 C -0.07 -2.51 9.55 22.52 0.22 -2.29 16 9 C -0.07 -3.04 5.56 -19.97 -0.11 -3.15 16 10 C 0.14 6.86 4.74 41.82 0.20 7.06 16 11 C -0.20 -10.52 8.26 23.08 0.19 -10.33 16 12 C 0.10 5.40 5.54 -21.12 -0.12 5.29 16 13 C -0.49 -25.70 9.11 23.52 0.21 -25.49 16 14 H 0.08 4.17 7.87 -2.91 -0.02 4.14 16 15 C 0.04 1.84 5.26 85.29 0.45 2.29 16 16 N -0.82 -42.71 11.06 21.84 0.24 -42.47 16 17 Si 0.99 37.05 29.57 68.60 2.03 39.08 16 18 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 19 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 20 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 21 C -0.28 -13.35 9.90 22.87 0.23 -13.13 16 22 C 0.10 4.37 11.15 84.56 0.94 5.31 16 23 N -0.56 -26.33 7.68 -185.42 -1.42 -27.75 16 24 C 0.12 5.09 6.80 39.49 0.27 5.36 16 25 H 0.07 2.80 7.77 -2.38 -0.02 2.78 16 26 H 0.06 2.52 6.02 -2.38 -0.01 2.51 16 27 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 28 H 0.24 3.68 8.06 -2.91 -0.02 3.66 16 29 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 30 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 31 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 32 H 0.11 5.87 6.50 -2.91 -0.02 5.85 16 33 H 0.29 13.70 8.29 -92.71 -0.77 12.93 16 34 H 0.12 5.01 8.06 -2.91 -0.02 4.99 16 35 H 0.16 5.63 8.06 -2.91 -0.02 5.61 16 Total: -1.00 -66.41 303.29 4.95 -61.45 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 1.12 Total: 29.08 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 5.11 Total: -30.54 kcal Atomic # 7 Polarization: -95.77 SS G_CDS: -3.30 Total: -99.07 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 2.03 Total: 39.08 kcal Total: -66.41 4.95 -61.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241453540.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.045 kcal (2) G-P(sol) polarization free energy of solvation -66.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds