Wall clock time and date at job start Tue Mar 31 2020 01:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39873 * 125.44408 * 2 1 4 4 C 1.30247 * 110.03596 * 180.02562 * 3 2 1 5 5 C 1.45983 * 107.73488 * 359.97438 * 4 3 2 6 6 C 1.39986 * 133.89539 * 180.28774 * 5 4 3 7 7 C 1.36582 * 120.05639 * 180.14953 * 6 5 4 8 8 C 1.38656 * 120.78896 * 359.55487 * 7 6 5 9 9 C 1.38880 * 120.51582 * 0.20525 * 8 7 6 10 10 C 1.48130 * 120.26792 * 180.02562 * 9 8 7 11 11 C 1.40000 * 119.61489 * 237.64400 * 10 9 8 12 12 C 1.38652 * 119.45626 * 179.74907 * 11 10 9 13 13 C 1.38320 * 118.70304 * 0.50567 * 12 11 10 14 14 C 1.40685 * 119.19949 * 359.73146 * 13 12 11 15 15 C 1.41358 * 119.76184 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00147 * 6.35569 * 15 14 13 17 17 C 1.40001 * 120.00377 * 186.35447 * 15 14 13 18 18 N 1.30758 * 119.99788 * 353.69404 * 17 15 14 19 19 Si 1.86801 * 120.00341 * 173.69037 * 17 15 14 20 20 H 1.48490 * 109.47115 * 90.00162 * 19 17 15 21 21 H 1.48500 * 109.47027 * 210.00310 * 19 17 15 22 22 H 1.48501 * 109.46926 * 329.99976 * 19 17 15 23 23 N 1.32294 * 119.61528 * 57.90485 * 10 9 8 24 24 C 1.36730 * 125.44335 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.46927 * 95.51403 * 1 2 3 26 26 H 1.08994 * 109.46886 * 215.52483 * 1 2 3 27 27 H 1.09004 * 109.46703 * 335.51835 * 1 2 3 28 28 H 1.08004 * 126.13594 * 180.02562 * 4 3 2 29 29 H 1.07994 * 119.97352 * 359.97438 * 6 5 4 30 30 H 1.07990 * 119.60205 * 179.80322 * 7 6 5 31 31 H 1.08000 * 119.74270 * 180.22665 * 8 7 6 32 32 H 1.08001 * 120.26772 * 359.96954 * 11 10 9 33 33 H 1.08002 * 120.64677 * 180.22376 * 12 11 10 34 34 H 1.08000 * 120.39655 * 179.71376 * 13 12 11 35 35 H 0.97003 * 119.99888 * 185.01648 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2762 1.1395 0.0000 4 6 3.5318 0.7935 -0.0005 5 6 3.5911 -0.6652 -0.0003 6 6 4.6384 -1.5940 0.0044 7 6 4.3658 -2.9323 0.0000 8 6 3.0570 -3.3901 0.0002 9 6 1.9964 -2.4936 0.0005 10 6 0.6002 -2.9887 0.0012 11 6 -0.2700 -2.6062 -1.0266 12 6 -1.5746 -3.0757 -1.0255 13 6 -1.9813 -3.9049 0.0042 14 6 -1.0618 -4.2499 1.0116 15 6 -1.4650 -5.0960 2.0697 16 1 -2.4412 -5.5576 2.0501 17 6 -0.5988 -5.3358 3.1432 18 7 0.6259 -4.8790 3.1096 19 14 -1.1927 -6.3082 4.6235 20 1 -0.9242 -7.7525 4.4070 21 1 -0.4743 -5.8478 5.8388 22 1 -2.6519 -6.0971 4.8013 23 7 0.1888 -3.7829 0.9759 24 6 2.2579 -1.1139 -0.0005 25 1 -0.3633 -0.0987 -1.0229 26 1 -0.3633 -0.8363 0.5971 27 1 -0.3633 0.9353 0.4259 28 1 4.3776 1.4652 -0.0003 29 1 5.6628 -1.2521 0.0086 30 1 5.1794 -3.6424 0.0005 31 1 2.8609 -4.4521 0.0004 32 1 0.0732 -1.9536 -1.8158 33 1 -2.2611 -2.7958 -1.8109 34 1 -2.9926 -4.2827 0.0346 35 1 1.2478 -5.1061 3.8186 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241453899.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:20 Heat of formation + Delta-G solvation = 124.834419 kcal Electronic energy + Delta-G solvation = -20922.048386 eV Core-core repulsion = 17886.300369 eV Total energy + Delta-G solvation = -3035.748017 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.87608 -38.28912 -36.62004 -33.98966 -33.00834 -31.23684 -30.34869 -29.41122 -28.85170 -26.30946 -25.34746 -23.15824 -21.81256 -21.37753 -21.09886 -19.61389 -17.56496 -16.58869 -16.39718 -15.32573 -15.17535 -14.79472 -14.61034 -14.18631 -14.07115 -13.71155 -13.41236 -12.80961 -12.57675 -12.43306 -12.15643 -11.94664 -11.42379 -11.25957 -11.14707 -11.09904 -10.93099 -10.80621 -10.53618 -10.40887 -9.97689 -9.60563 -9.39036 -8.39956 -8.17681 -7.77471 -7.69576 -7.15334 -6.47783 -4.60375 1.32047 1.98852 2.55402 2.80726 2.83441 2.97780 3.05023 3.06974 3.13685 3.88710 4.24908 4.62659 4.82355 4.93477 5.13771 5.46279 5.48277 5.66188 5.68669 5.73392 5.78499 5.98482 6.06492 6.11753 6.25656 6.33631 6.40609 6.65763 6.67724 6.81380 6.92043 6.95637 7.11037 7.18971 7.28983 7.45320 7.48539 7.61838 7.90692 8.00762 8.12481 8.56648 8.81485 9.95059 10.22555 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018737 B = 0.006084 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.017899 B = 4601.360174 C = 5260.230683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.397 5.397 3 N -0.263 5.263 4 C 0.061 3.939 5 C -0.189 4.189 6 C -0.055 4.055 7 C -0.156 4.156 8 C -0.045 4.045 9 C -0.024 4.024 10 C 0.177 3.823 11 C -0.304 4.304 12 C -0.058 4.058 13 C -0.274 4.274 14 C 0.253 3.747 15 C -0.429 4.429 16 H 0.085 0.915 17 C 0.069 3.931 18 N -0.711 5.711 19 Si 0.905 3.095 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.261 1.261 23 N -0.463 5.463 24 C 0.146 3.854 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.191 0.809 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.237 4.898 -3.632 8.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.185 5.185 3 N -0.076 5.076 4 C -0.135 4.135 5 C -0.197 4.197 6 C -0.076 4.076 7 C -0.176 4.176 8 C -0.066 4.066 9 C -0.029 4.029 10 C 0.031 3.969 11 C -0.328 4.328 12 C -0.082 4.082 13 C -0.297 4.297 14 C 0.129 3.871 15 C -0.460 4.460 16 H 0.103 0.897 17 C -0.157 4.157 18 N -0.332 5.332 19 Si 0.729 3.271 20 H -0.193 1.193 21 H -0.201 1.201 22 H -0.185 1.185 23 N -0.175 5.175 24 C 0.030 3.970 25 H 0.090 0.910 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.208 0.792 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.148 0.852 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.904 5.692 -2.769 8.007 hybrid contribution -0.423 -0.871 -0.028 0.969 sum 4.481 4.820 -2.796 7.151 Atomic orbital electron populations 1.22036 0.73783 1.03778 1.03269 1.47998 1.05940 1.00822 1.63740 1.76474 1.02710 1.09739 1.18654 1.24911 0.94568 0.93065 1.00991 1.19780 0.92911 0.93152 1.13880 1.20185 0.97074 0.92037 0.98326 1.20549 0.96491 0.95167 1.05397 1.21052 0.90864 0.99495 0.95202 1.17715 0.93387 0.87996 1.03814 1.19624 0.90978 0.94384 0.91865 1.21156 0.95769 1.12395 1.03464 1.20750 0.94827 0.96034 0.96617 1.21782 1.00222 1.07782 0.99911 1.18555 0.86906 0.90535 0.91130 1.19606 1.01523 1.23503 1.01363 0.89728 1.26069 0.94776 0.95259 0.99567 1.70103 1.03545 1.29670 1.29837 0.86347 0.80183 0.80063 0.80460 1.19349 1.20089 1.18496 1.68969 1.16046 1.11007 1.21462 1.18697 0.90319 0.88729 0.99253 0.91048 0.88901 0.90613 0.79193 0.86147 0.86008 0.85245 0.89024 0.88484 0.88259 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.97 9.50 59.85 0.57 2.54 16 2 N -0.40 -7.63 4.04 -65.27 -0.26 -7.89 16 3 N -0.26 -4.64 12.40 31.88 0.40 -4.24 16 4 C 0.06 0.93 12.29 -15.12 -0.19 0.75 16 5 C -0.19 -3.27 6.36 -105.22 -0.67 -3.94 16 6 C -0.06 -0.83 10.05 -39.52 -0.40 -1.23 16 7 C -0.16 -2.47 9.95 -40.02 -0.40 -2.87 16 8 C -0.04 -0.86 9.74 -39.19 -0.38 -1.24 16 9 C -0.02 -0.53 5.54 -104.78 -0.58 -1.11 16 10 C 0.18 4.18 4.93 -82.95 -0.41 3.77 16 11 C -0.30 -6.59 6.67 -38.77 -0.26 -6.85 16 12 C -0.06 -1.24 10.14 -39.40 -0.40 -1.64 16 13 C -0.27 -6.44 9.83 -38.63 -0.38 -6.82 16 14 C 0.25 6.68 6.54 -85.01 -0.56 6.12 16 15 C -0.43 -11.11 9.13 -37.74 -0.34 -11.45 16 16 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 17 C 0.07 1.71 5.49 -17.35 -0.10 1.62 16 18 N -0.71 -18.45 11.48 55.55 0.64 -17.81 16 19 Si 0.91 18.20 29.57 -169.99 -5.03 13.17 16 20 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 23 N -0.46 -12.23 7.82 -7.69 -0.06 -12.29 16 24 C 0.15 2.93 6.72 -83.94 -0.56 2.37 16 25 H 0.07 1.16 6.88 -51.93 -0.36 0.80 16 26 H 0.09 1.87 6.05 -51.93 -0.31 1.56 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.19 1.96 8.06 -52.48 -0.42 1.53 16 29 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 31 H 0.13 2.55 8.06 -52.49 -0.42 2.13 16 32 H 0.09 1.86 7.26 -52.49 -0.38 1.48 16 33 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 34 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 35 H 0.27 6.52 8.30 -40.82 -0.34 6.18 16 LS Contribution 302.35 15.07 4.56 4.56 Total: -1.00 -29.70 302.35 -8.37 -38.07 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -3.56 Total: 6.41 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -5.05 Total: -19.97 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.71 Total: -42.24 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.70 -8.37 -38.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241453899.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.902 kcal (2) G-P(sol) polarization free energy of solvation -29.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds