Wall clock time and date at job start Tue Mar 31 2020 01:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39876 * 125.45578 * 2 1 4 4 C 1.30250 * 110.04050 * 179.97438 * 3 2 1 5 5 C 1.45979 * 107.74858 * 359.97438 * 4 3 2 6 6 C 1.40013 * 133.89155 * 180.02562 * 5 4 3 7 7 C 1.36523 * 120.03936 * 179.97438 * 6 5 4 8 8 C 1.38722 * 120.77746 * 359.80428 * 7 6 5 9 9 C 1.38762 * 120.52016 * 0.45867 * 8 7 6 10 10 C 1.48296 * 120.25868 * 179.78105 * 9 8 7 11 11 C 1.39764 * 120.42096 * 129.74777 * 10 9 8 12 12 N 1.31902 * 121.14425 * 179.97438 * 11 10 9 13 13 C 1.31526 * 122.12490 * 0.02562 * 12 11 10 14 14 C 1.40790 * 120.67957 * 359.74618 * 13 12 11 15 15 C 1.41433 * 120.60131 * 180.26615 * 14 13 12 16 16 H 1.08003 * 120.00416 * 330.69418 * 15 14 13 17 17 C 1.39931 * 120.00154 * 150.70156 * 15 14 13 18 18 N 1.30832 * 120.00319 * 161.72566 * 17 15 14 19 19 Si 1.86808 * 119.99692 * 341.73032 * 17 15 14 20 20 H 1.48506 * 109.47014 * 95.40906 * 19 17 15 21 21 H 1.48492 * 109.46912 * 215.40617 * 19 17 15 22 22 H 1.48495 * 109.47063 * 335.40871 * 19 17 15 23 23 C 1.39196 * 120.41196 * 309.72371 * 10 9 8 24 24 C 1.36828 * 125.45143 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47100 * 270.04521 * 1 2 3 26 26 H 1.09001 * 109.46974 * 30.04177 * 1 2 3 27 27 H 1.08997 * 109.47148 * 150.04356 * 1 2 3 28 28 H 1.07995 * 126.12913 * 179.97438 * 4 3 2 29 29 H 1.08004 * 119.98409 * 0.02562 * 6 5 4 30 30 H 1.07999 * 119.60950 * 180.02562 * 7 6 5 31 31 H 1.07993 * 119.74205 * 180.26159 * 8 7 6 32 32 H 1.07998 * 119.42763 * 359.97390 * 11 10 9 33 33 H 1.08002 * 119.66385 * 180.02562 * 13 12 11 34 34 H 0.96996 * 120.00139 * 179.97438 * 18 17 15 35 35 H 1.08003 * 120.95403 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2764 1.1394 0.0000 4 6 3.5320 0.7932 0.0005 5 6 3.5915 -0.6654 0.0016 6 6 4.6392 -1.5942 0.0029 7 6 4.3665 -2.9320 0.0042 8 6 3.0570 -3.3895 0.0082 9 6 1.9974 -2.4935 0.0014 10 6 0.5997 -2.9891 0.0009 11 6 -0.3268 -2.4946 0.9231 12 7 -1.5736 -2.9249 0.9350 13 6 -2.0081 -3.8334 0.0890 14 6 -1.1465 -4.3845 -0.8785 15 6 -1.6169 -5.3572 -1.7911 16 1 -2.4199 -6.0211 -1.5065 17 6 -1.0420 -5.4596 -3.0627 18 7 -1.2046 -6.5493 -3.7684 19 14 -0.0421 -4.0405 -3.7526 20 1 1.3993 -4.2721 -3.4804 21 1 -0.2603 -3.9480 -5.2185 22 1 -0.4704 -2.7735 -3.1074 23 6 0.1939 -3.9522 -0.9185 24 6 2.2586 -1.1146 0.0005 25 1 -0.3633 0.0008 1.0277 26 1 -0.3633 0.8896 -0.5145 27 1 -0.3633 -0.8903 -0.5131 28 1 4.3777 1.4648 0.0003 29 1 5.6636 -1.2523 0.0038 30 1 5.1800 -3.6423 0.0056 31 1 2.8605 -4.4514 0.0134 32 1 -0.0165 -1.7473 1.6384 33 1 -3.0376 -4.1567 0.1340 34 1 -0.8064 -6.6201 -4.6500 35 1 0.8858 -4.3541 -1.6439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241457349.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:23 Heat of formation + Delta-G solvation = 116.511057 kcal Electronic energy + Delta-G solvation = -21004.983685 eV Core-core repulsion = 17968.874740 eV Total energy + Delta-G solvation = -3036.108945 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.15304 -38.76921 -36.94967 -34.25777 -33.62364 -31.81842 -31.02650 -29.67385 -28.84939 -26.16820 -25.55309 -23.43025 -22.44861 -21.44172 -21.42416 -19.76767 -17.64373 -16.93838 -16.55102 -16.06748 -15.39947 -15.31423 -14.93668 -14.63340 -14.16000 -13.88336 -13.48375 -13.17319 -12.91556 -12.82596 -12.28869 -12.09807 -12.04522 -11.62241 -11.48461 -11.37736 -11.15529 -10.97414 -10.69740 -10.38840 -10.10780 -9.83755 -9.59117 -8.76895 -8.40766 -8.30017 -8.01957 -7.31717 -7.18360 -4.73362 1.00387 1.69641 2.17977 2.46942 2.59507 2.70882 2.96247 3.04774 3.13768 3.77352 3.97248 4.34097 4.61492 4.70685 4.92651 5.12973 5.24616 5.32010 5.45117 5.49364 5.52969 5.70754 5.79407 5.90039 5.98550 6.02690 6.13188 6.23017 6.40131 6.52885 6.65016 6.70791 6.75431 6.96242 7.02095 7.19002 7.25242 7.44182 7.61620 7.78780 8.07626 8.26024 8.50391 9.24098 9.82354 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018776 B = 0.006783 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.889825 B = 4126.681250 C = 4645.658536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.397 5.397 3 N -0.257 5.257 4 C 0.063 3.937 5 C -0.186 4.186 6 C -0.052 4.052 7 C -0.155 4.155 8 C -0.068 4.068 9 C -0.044 4.044 10 C -0.065 4.065 11 C -0.034 4.034 12 N -0.459 5.459 13 C 0.005 3.995 14 C 0.045 3.955 15 C -0.430 4.430 16 H 0.098 0.902 17 C 0.086 3.914 18 N -0.793 5.793 19 Si 0.905 3.095 20 H -0.265 1.265 21 H -0.285 1.285 22 H -0.248 1.248 23 C -0.190 4.190 24 C 0.140 3.860 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.194 0.806 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.136 0.864 34 H 0.289 0.711 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.546 8.131 3.197 12.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.184 5.184 3 N -0.070 5.070 4 C -0.134 4.134 5 C -0.194 4.194 6 C -0.073 4.073 7 C -0.175 4.175 8 C -0.089 4.089 9 C -0.048 4.048 10 C -0.068 4.068 11 C -0.189 4.189 12 N -0.166 5.166 13 C -0.159 4.159 14 C 0.040 3.960 15 C -0.459 4.459 16 H 0.116 0.884 17 C -0.135 4.135 18 N -0.416 5.416 19 Si 0.731 3.269 20 H -0.191 1.191 21 H -0.212 1.212 22 H -0.172 1.172 23 C -0.215 4.215 24 C 0.025 3.975 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.118 0.882 28 H 0.210 0.790 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.149 0.851 32 H 0.140 0.860 33 H 0.154 0.846 34 H 0.100 0.900 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.944 9.305 3.588 12.750 hybrid contribution 1.560 -0.621 -1.140 2.029 sum 9.504 8.684 2.448 13.105 Atomic orbital electron populations 1.22312 0.73483 1.04539 1.03480 1.48119 1.06081 1.00762 1.63476 1.76526 1.02672 1.09569 1.18239 1.24966 0.94649 0.92964 1.00816 1.19844 0.92869 0.93322 1.13327 1.20239 0.97310 0.91990 0.97748 1.20565 0.96413 0.95333 1.05142 1.21154 0.91306 0.99418 0.97023 1.17965 0.93821 0.88436 1.04591 1.19284 0.91581 0.97969 0.97917 1.21842 0.89757 1.05243 1.02078 1.67014 1.15881 1.11156 1.22507 1.22648 0.98842 0.97479 0.96930 1.18574 0.91229 0.91911 0.94278 1.19476 1.16869 1.12974 0.96577 0.88394 1.26157 0.93979 0.96250 0.97112 1.69674 1.35053 1.25125 1.11766 0.86387 0.80113 0.82970 0.77427 1.19121 1.21204 1.17152 1.21452 0.96121 1.02182 1.01788 1.18739 0.90474 0.88831 0.99483 0.90630 0.90457 0.88181 0.78974 0.85822 0.85697 0.85113 0.85955 0.84649 0.90014 0.87068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.68 9.31 59.85 0.56 2.24 16 2 N -0.40 -7.00 4.04 -65.27 -0.26 -7.27 16 3 N -0.26 -4.18 12.41 31.88 0.40 -3.79 16 4 C 0.06 0.86 12.29 -15.12 -0.19 0.67 16 5 C -0.19 -2.87 6.36 -105.22 -0.67 -3.54 16 6 C -0.05 -0.69 10.05 -39.54 -0.40 -1.08 16 7 C -0.15 -2.12 9.95 -40.02 -0.40 -2.52 16 8 C -0.07 -1.13 9.51 -39.21 -0.37 -1.51 16 9 C -0.04 -0.82 5.50 -104.77 -0.58 -1.40 16 10 C -0.07 -1.37 4.47 -104.83 -0.47 -1.84 16 11 C -0.03 -0.71 7.39 -16.95 -0.13 -0.83 16 12 N -0.46 -10.07 10.32 -12.27 -0.13 -10.20 16 13 C 0.00 0.11 10.96 -16.72 -0.18 -0.08 16 14 C 0.05 1.08 5.12 -106.71 -0.55 0.53 16 15 C -0.43 -10.82 9.60 -37.73 -0.36 -11.18 16 16 H 0.10 2.54 8.06 -52.48 -0.42 2.12 16 17 C 0.09 2.12 5.42 -17.34 -0.09 2.03 16 18 N -0.79 -19.87 13.93 55.55 0.77 -19.10 16 19 Si 0.91 20.01 24.53 -169.99 -4.17 15.84 16 20 H -0.27 -5.75 6.70 56.52 0.38 -5.37 16 21 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.25 -5.71 6.85 56.52 0.39 -5.32 16 23 C -0.19 -4.35 6.78 -38.22 -0.26 -4.61 16 24 C 0.14 2.54 6.69 -83.94 -0.56 1.98 16 25 H 0.08 1.16 6.84 -51.93 -0.36 0.80 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.10 1.87 5.31 -51.93 -0.28 1.60 16 28 H 0.19 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 30 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.13 2.08 8.04 -52.49 -0.42 1.66 16 32 H 0.12 2.37 6.41 -52.49 -0.34 2.03 16 33 H 0.14 2.83 8.06 -52.49 -0.42 2.41 16 34 H 0.29 6.56 8.30 -40.82 -0.34 6.22 16 35 H 0.11 2.55 4.79 -52.48 -0.25 2.30 16 LS Contribution 293.38 15.07 4.42 4.42 Total: -1.00 -27.85 293.38 -6.96 -34.81 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -3.35 Total: 6.40 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -4.64 Total: -21.14 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.78 Total: -40.34 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.17 Total: 15.84 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.85 -6.96 -34.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241457349.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.324 kcal (2) G-P(sol) polarization free energy of solvation -27.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds