Wall clock time and date at job start Tue Mar 31 2020 01:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39876 * 125.45578 * 2 1 4 4 C 1.30250 * 110.04050 * 179.97438 * 3 2 1 5 5 C 1.45979 * 107.74858 * 359.97438 * 4 3 2 6 6 C 1.40013 * 133.89155 * 180.02562 * 5 4 3 7 7 C 1.36523 * 120.03936 * 179.97438 * 6 5 4 8 8 C 1.38722 * 120.77746 * 359.80428 * 7 6 5 9 9 C 1.38762 * 120.52016 * 0.45867 * 8 7 6 10 10 C 1.48296 * 120.25868 * 179.78105 * 9 8 7 11 11 C 1.39764 * 120.42096 * 129.74777 * 10 9 8 12 12 N 1.31902 * 121.14425 * 179.97438 * 11 10 9 13 13 C 1.31526 * 122.12490 * 0.02562 * 12 11 10 14 14 C 1.40790 * 120.67957 * 359.74618 * 13 12 11 15 15 C 1.41433 * 120.60131 * 180.26615 * 14 13 12 16 16 H 1.08003 * 120.00416 * 330.69418 * 15 14 13 17 17 C 1.39931 * 120.00154 * 150.70156 * 15 14 13 18 18 N 1.30832 * 120.00319 * 161.72566 * 17 15 14 19 19 Si 1.86808 * 119.99692 * 341.73032 * 17 15 14 20 20 H 1.48506 * 109.47014 * 95.40906 * 19 17 15 21 21 H 1.48492 * 109.46912 * 215.40617 * 19 17 15 22 22 H 1.48495 * 109.47063 * 335.40871 * 19 17 15 23 23 C 1.39196 * 120.41196 * 309.72371 * 10 9 8 24 24 C 1.36828 * 125.45143 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47100 * 270.04521 * 1 2 3 26 26 H 1.09001 * 109.46974 * 30.04177 * 1 2 3 27 27 H 1.08997 * 109.47148 * 150.04356 * 1 2 3 28 28 H 1.07995 * 126.12913 * 179.97438 * 4 3 2 29 29 H 1.08004 * 119.98409 * 0.02562 * 6 5 4 30 30 H 1.07999 * 119.60950 * 180.02562 * 7 6 5 31 31 H 1.07993 * 119.74205 * 180.26159 * 8 7 6 32 32 H 1.07998 * 119.42763 * 359.97390 * 11 10 9 33 33 H 1.08002 * 119.66385 * 180.02562 * 13 12 11 34 34 H 0.96996 * 120.00139 * 179.97438 * 18 17 15 35 35 H 1.08003 * 120.95403 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2764 1.1394 0.0000 4 6 3.5320 0.7932 0.0005 5 6 3.5915 -0.6654 0.0016 6 6 4.6392 -1.5942 0.0029 7 6 4.3665 -2.9320 0.0042 8 6 3.0570 -3.3895 0.0082 9 6 1.9974 -2.4935 0.0014 10 6 0.5997 -2.9891 0.0009 11 6 -0.3268 -2.4946 0.9231 12 7 -1.5736 -2.9249 0.9350 13 6 -2.0081 -3.8334 0.0890 14 6 -1.1465 -4.3845 -0.8785 15 6 -1.6169 -5.3572 -1.7911 16 1 -2.4199 -6.0211 -1.5065 17 6 -1.0420 -5.4596 -3.0627 18 7 -1.2046 -6.5493 -3.7684 19 14 -0.0421 -4.0405 -3.7526 20 1 1.3993 -4.2721 -3.4804 21 1 -0.2603 -3.9480 -5.2185 22 1 -0.4704 -2.7735 -3.1074 23 6 0.1939 -3.9522 -0.9185 24 6 2.2586 -1.1146 0.0005 25 1 -0.3633 0.0008 1.0277 26 1 -0.3633 0.8896 -0.5145 27 1 -0.3633 -0.8903 -0.5131 28 1 4.3777 1.4648 0.0003 29 1 5.6636 -1.2523 0.0038 30 1 5.1800 -3.6423 0.0056 31 1 2.8605 -4.4514 0.0134 32 1 -0.0165 -1.7473 1.6384 33 1 -3.0376 -4.1567 0.1340 34 1 -0.8064 -6.6201 -4.6500 35 1 0.8858 -4.3541 -1.6439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241457349.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:23 Heat of formation + Delta-G solvation = 100.073866 kcal Electronic energy + Delta-G solvation = -21005.696455 eV Core-core repulsion = 17968.874740 eV Total energy + Delta-G solvation = -3036.821715 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.35596 -40.47256 -38.15081 -36.03051 -35.01137 -33.43473 -32.60833 -30.85427 -30.24677 -27.68813 -27.12416 -24.85874 -23.98482 -22.85586 -22.74485 -21.12596 -19.41230 -18.33409 -17.92653 -17.51884 -17.08756 -16.75365 -16.30560 -16.06941 -15.43124 -15.22724 -14.93993 -14.78723 -14.28478 -14.23370 -13.95492 -13.73109 -13.57455 -13.14288 -12.79696 -12.75846 -12.68454 -12.55876 -12.03545 -11.89766 -11.76017 -11.44286 -11.08135 -10.36966 -10.10747 -9.84352 -9.52748 -9.04534 -8.63735 -6.64587 -0.23953 0.40873 0.60198 0.73948 1.16363 1.25524 1.34235 1.41117 1.55579 1.97029 2.48727 2.81250 3.37496 3.49292 3.59968 3.64406 3.91755 4.05436 4.10290 4.20598 4.28839 4.34010 4.42636 4.46567 4.57710 4.65674 4.77240 4.80434 4.93306 5.01971 5.21476 5.35011 5.49774 5.55312 5.56127 5.63661 5.81472 5.89250 6.01635 6.16056 6.42657 6.61619 6.64169 7.44948 8.02380 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018776 B = 0.006783 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.889825 B = 4126.681250 C = 4645.658536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.417 5.417 3 N -0.284 5.284 4 C 0.087 3.913 5 C -0.198 4.198 6 C -0.028 4.028 7 C -0.158 4.158 8 C -0.069 4.069 9 C -0.088 4.088 10 C -0.056 4.056 11 C -0.018 4.018 12 N -0.465 5.465 13 C -0.007 4.007 14 C 0.034 3.966 15 C -0.461 4.461 16 H 0.074 0.926 17 C 0.061 3.939 18 N -0.827 5.827 19 Si 0.950 3.050 20 H -0.257 1.257 21 H -0.270 1.270 22 H -0.267 1.267 23 C -0.199 4.199 24 C 0.117 3.883 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.244 0.756 29 H 0.172 0.828 30 H 0.161 0.839 31 H 0.128 0.872 32 H 0.139 0.861 33 H 0.145 0.855 34 H 0.298 0.702 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.275 10.280 3.711 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.204 5.204 3 N -0.096 5.096 4 C -0.110 4.110 5 C -0.206 4.206 6 C -0.048 4.048 7 C -0.177 4.177 8 C -0.090 4.090 9 C -0.093 4.093 10 C -0.058 4.058 11 C -0.174 4.174 12 N -0.171 5.171 13 C -0.169 4.169 14 C 0.030 3.970 15 C -0.491 4.491 16 H 0.092 0.908 17 C -0.156 4.156 18 N -0.452 5.452 19 Si 0.775 3.225 20 H -0.183 1.183 21 H -0.197 1.197 22 H -0.192 1.192 23 C -0.225 4.225 24 C 0.002 3.998 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.089 0.911 28 H 0.260 0.740 29 H 0.190 0.810 30 H 0.179 0.821 31 H 0.146 0.854 32 H 0.156 0.844 33 H 0.162 0.838 34 H 0.109 0.891 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.654 11.439 4.098 16.837 hybrid contribution 0.590 -1.137 -1.119 1.701 sum 12.244 10.302 2.979 16.277 Atomic orbital electron populations 1.22140 0.73930 1.03790 1.03491 1.48221 1.06233 1.01179 1.64792 1.76529 1.03756 1.09302 1.20004 1.25824 0.94995 0.92797 0.97367 1.20291 0.92267 0.94632 1.13450 1.20803 0.98957 0.91159 0.93835 1.20956 0.95799 0.96633 1.04358 1.21382 0.92449 0.99116 0.96039 1.17937 0.92806 0.89583 1.08955 1.19505 0.93353 0.96539 0.96424 1.22175 0.89296 1.04361 1.01550 1.67062 1.16569 1.11012 1.22502 1.22804 0.99355 0.97786 0.96973 1.18672 0.92001 0.91954 0.94385 1.19422 1.17580 1.14197 0.97883 0.90756 1.26590 0.94561 0.97560 0.96932 1.69679 1.36703 1.26142 1.12666 0.85705 0.79444 0.79945 0.77440 1.18265 1.19651 1.19152 1.21519 0.95586 1.03065 1.02302 1.18993 0.92181 0.88567 1.00081 0.90191 0.88953 0.91099 0.74031 0.81017 0.82122 0.85437 0.84356 0.83760 0.89068 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.50 9.31 127.77 1.19 4.69 16 2 N -0.42 -14.11 4.04 -360.43 -1.46 -15.57 16 3 N -0.28 -8.46 12.41 -53.05 -0.66 -9.11 16 4 C 0.09 1.98 12.29 86.93 1.07 3.05 16 5 C -0.20 -5.32 6.36 -20.25 -0.13 -5.45 16 6 C -0.03 -0.57 10.05 22.30 0.22 -0.35 16 7 C -0.16 -3.63 9.95 21.98 0.22 -3.41 16 8 C -0.07 -2.16 9.51 22.51 0.21 -1.95 16 9 C -0.09 -3.24 5.50 -19.96 -0.11 -3.35 16 10 C -0.06 -2.37 4.47 -20.00 -0.09 -2.46 16 11 C -0.02 -0.74 7.39 85.05 0.63 -0.11 16 12 N -0.46 -20.65 10.32 -192.72 -1.99 -22.63 16 13 C -0.01 -0.33 10.96 85.36 0.94 0.61 16 14 C 0.03 1.71 5.12 -21.22 -0.11 1.60 16 15 C -0.46 -24.45 9.60 23.47 0.23 -24.22 16 16 H 0.07 4.15 8.06 -2.91 -0.02 4.13 16 17 C 0.06 3.13 5.42 85.25 0.46 3.60 16 18 N -0.83 -42.76 13.93 21.82 0.30 -42.45 16 19 Si 0.95 41.96 24.53 68.60 1.68 43.64 16 20 H -0.26 -10.88 6.70 99.48 0.67 -10.22 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 22 H -0.27 -12.49 6.85 99.48 0.68 -11.81 16 23 C -0.20 -9.30 6.78 23.15 0.16 -9.15 16 24 C 0.12 4.02 6.69 39.47 0.26 4.29 16 25 H 0.08 2.43 6.84 -2.39 -0.02 2.41 16 26 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.07 2.70 5.31 -2.39 -0.01 2.68 16 28 H 0.24 2.71 8.06 -2.91 -0.02 2.69 16 29 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 31 H 0.13 3.94 8.04 -2.91 -0.02 3.91 16 32 H 0.14 5.29 6.41 -2.91 -0.02 5.27 16 33 H 0.15 6.31 8.06 -2.91 -0.02 6.29 16 34 H 0.30 13.82 8.30 -92.71 -0.77 13.05 16 35 H 0.11 5.05 4.79 -2.91 -0.01 5.04 16 Total: -1.00 -62.84 293.38 4.10 -58.75 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 1.06 Total: 20.01 kcal Atomic # 6 Polarization: -37.77 SS G_CDS: 5.15 Total: -32.62 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -3.80 Total: -89.77 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.68 Total: 43.64 kcal Total: -62.84 4.10 -58.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241457349.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.820 kcal (2) G-P(sol) polarization free energy of solvation -62.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds