Wall clock time and date at job start Tue Mar 31 2020 01:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39868 * 125.43493 * 2 1 4 4 C 1.30281 * 110.00950 * 180.02562 * 3 2 1 5 5 C 1.45977 * 107.70601 * 0.02562 * 4 3 2 6 6 C 1.40075 * 133.83787 * 180.02562 * 5 4 3 7 7 C 1.37692 * 120.00200 * 179.97438 * 6 5 4 8 8 C 1.38529 * 120.68437 * 359.97438 * 7 6 5 9 9 C 1.39257 * 120.47822 * 0.02562 * 8 7 6 10 10 C 1.47584 * 120.22137 * 180.02562 * 9 8 7 11 11 C 1.39473 * 120.79861 * 64.72155 * 10 9 8 12 12 N 1.31613 * 120.63564 * 179.70544 * 11 10 9 13 13 C 1.32265 * 122.52256 * 0.59077 * 12 11 10 14 14 C 1.36405 * 121.55098 * 359.70050 * 13 12 11 15 15 C 1.41162 * 119.11814 * 359.97438 * 14 13 12 16 16 C 1.40811 * 121.11654 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00545 * 156.36734 * 16 15 14 18 18 C 1.40151 * 119.99911 * 336.36294 * 16 15 14 19 19 N 1.30700 * 120.00312 * 342.83421 * 18 16 15 20 20 Si 1.86807 * 119.99852 * 162.83292 * 18 16 15 21 21 H 1.48495 * 109.46943 * 90.00300 * 20 18 16 22 22 H 1.48503 * 109.46759 * 210.00397 * 20 18 16 23 23 H 1.48507 * 109.47027 * 330.00064 * 20 18 16 24 24 C 1.36657 * 125.43470 * 180.32340 * 2 1 3 25 25 H 1.09005 * 109.46816 * 89.97202 * 1 2 3 26 26 H 1.09001 * 109.47260 * 209.96926 * 1 2 3 27 27 H 1.09000 * 109.47055 * 329.97078 * 1 2 3 28 28 H 1.07994 * 126.14559 * 179.97438 * 4 3 2 29 29 H 1.07997 * 119.99935 * 0.02562 * 6 5 4 30 30 H 1.08002 * 119.66148 * 180.02562 * 7 6 5 31 31 H 1.07996 * 119.76277 * 180.02562 * 8 7 6 32 32 H 1.07995 * 119.68028 * 359.96948 * 11 10 9 33 33 H 1.08008 * 119.22379 * 179.72078 * 13 12 11 34 34 H 1.07999 * 120.44296 * 180.02562 * 14 13 12 35 35 H 0.96993 * 120.00144 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2759 1.1396 0.0000 4 6 3.5318 0.7931 -0.0005 5 6 3.5899 -0.6655 -0.0016 6 6 4.6381 -1.5947 -0.0020 7 6 4.3622 -2.9438 -0.0025 8 6 3.0534 -3.3977 -0.0020 9 6 1.9928 -2.4953 -0.0016 10 6 0.6007 -2.9852 -0.0005 11 6 0.0976 -3.7045 1.0834 12 7 -1.1462 -4.1349 1.0835 13 6 -1.9714 -3.9248 0.0714 14 6 -1.5782 -3.2376 -1.0394 15 6 -0.2591 -2.7396 -1.1078 16 6 0.1910 -2.0242 -2.2340 17 1 1.0207 -1.3389 -2.1424 18 6 -0.4376 -2.2014 -3.4740 19 7 -1.1976 -3.2450 -3.6783 20 14 -0.1893 -0.9461 -4.8350 21 1 0.9865 -1.3320 -5.6557 22 1 -1.3997 -0.9017 -5.6942 23 1 0.0425 0.3932 -4.2368 24 6 2.2573 -1.1134 -0.0063 25 1 -0.3633 0.0005 -1.0277 26 1 -0.3634 -0.8903 0.5134 27 1 -0.3633 0.8897 0.5143 28 1 4.3778 1.4643 -0.0011 29 1 5.6626 -1.2531 -0.0011 30 1 5.1747 -3.6554 -0.0024 31 1 2.8542 -4.4591 -0.0020 32 1 0.7335 -3.9065 1.9326 33 1 -2.9805 -4.3060 0.1260 34 1 -2.2671 -3.0761 -1.8553 35 1 -1.6330 -3.3674 -4.5363 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241457927.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:37 Heat of formation + Delta-G solvation = 113.604305 kcal Electronic energy + Delta-G solvation = -21451.286181 eV Core-core repulsion = 18415.051190 eV Total energy + Delta-G solvation = -3036.234992 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.74115 -38.44927 -36.44466 -34.42360 -33.24820 -31.07382 -30.35717 -29.27925 -28.43543 -26.14102 -25.61959 -22.95917 -21.84203 -21.24050 -21.13524 -19.49685 -17.76273 -16.45097 -16.25290 -15.73317 -14.86310 -14.80705 -14.55494 -14.34078 -14.04284 -13.62264 -13.24486 -12.79465 -12.47574 -12.47043 -12.28781 -11.90360 -11.56169 -11.49201 -11.33169 -11.23099 -10.95544 -10.75333 -10.45809 -10.36398 -9.87862 -9.54925 -9.35716 -8.24718 -8.07885 -8.03013 -7.79840 -7.05709 -6.97899 -4.75892 1.45684 2.11908 2.52415 2.67941 2.91390 2.96209 3.00326 3.04152 3.12177 3.71424 4.36389 4.46233 4.98786 5.05930 5.34956 5.40843 5.61466 5.68199 5.74965 5.83347 5.89420 6.02051 6.18407 6.25020 6.34109 6.38421 6.58943 6.71264 6.75744 6.90303 6.99798 7.01742 7.10949 7.24995 7.34806 7.38446 7.65985 7.68598 7.93496 8.17576 8.28779 8.52707 8.56862 9.50164 9.83637 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013353 B = 0.009223 C = 0.007079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.383229 B = 3035.210097 C = 3954.230733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.387 5.387 3 N -0.262 5.262 4 C 0.052 3.948 5 C -0.187 4.187 6 C -0.070 4.070 7 C -0.153 4.153 8 C -0.088 4.088 9 C 0.012 3.988 10 C -0.242 4.242 11 C 0.131 3.869 12 N -0.578 5.578 13 C 0.083 3.917 14 C -0.213 4.213 15 C 0.147 3.853 16 C -0.439 4.439 17 H 0.084 0.916 18 C 0.081 3.919 19 N -0.771 5.771 20 Si 0.903 3.097 21 H -0.265 1.265 22 H -0.272 1.272 23 H -0.258 1.258 24 C 0.144 3.856 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.188 0.812 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.858 3.749 2.073 7.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.174 5.174 3 N -0.076 5.076 4 C -0.144 4.144 5 C -0.195 4.195 6 C -0.091 4.091 7 C -0.173 4.173 8 C -0.109 4.109 9 C 0.008 3.992 10 C -0.247 4.247 11 C -0.027 4.027 12 N -0.293 5.293 13 C -0.064 4.064 14 C -0.236 4.236 15 C 0.139 3.861 16 C -0.469 4.469 17 H 0.102 0.898 18 C -0.141 4.141 19 N -0.395 5.395 20 Si 0.726 3.274 21 H -0.190 1.190 22 H -0.196 1.196 23 H -0.181 1.181 24 C 0.029 3.971 25 H 0.104 0.896 26 H 0.109 0.891 27 H 0.086 0.914 28 H 0.205 0.795 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.291 4.154 2.609 6.517 hybrid contribution 0.878 0.231 -1.662 1.894 sum 5.169 4.384 0.947 6.844 Atomic orbital electron populations 1.22083 0.73783 1.03083 1.04476 1.47936 1.05958 1.00704 1.62775 1.76465 1.02663 1.10083 1.18382 1.24861 0.94555 0.93121 1.01855 1.19812 0.93161 0.93080 1.13468 1.20374 0.96823 0.91953 0.99903 1.20694 0.96317 0.94919 1.05364 1.21072 0.91243 0.98888 0.99666 1.17663 0.93507 0.87736 1.00319 1.19441 0.92823 1.12221 1.00239 1.22122 0.91809 0.93423 0.95364 1.67335 1.04838 1.27395 1.29703 1.21722 0.97614 0.96743 0.90338 1.21907 0.97115 1.05250 0.99280 1.17695 0.90006 0.87790 0.90576 1.19601 1.14079 1.21016 0.92205 0.89760 1.25999 0.92922 0.94935 1.00236 1.69746 1.21673 1.23079 1.24984 0.86354 0.79117 0.81739 0.80142 1.19024 1.19631 1.18121 1.18854 0.89879 0.89228 0.99181 0.89606 0.89098 0.91397 0.79523 0.86520 0.86467 0.85988 0.86128 0.86458 0.85578 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.05 9.29 59.85 0.56 2.61 16 2 N -0.39 -7.84 3.74 -65.23 -0.24 -8.08 16 3 N -0.26 -4.95 12.41 31.88 0.40 -4.56 16 4 C 0.05 0.85 12.29 -15.11 -0.19 0.67 16 5 C -0.19 -3.38 6.36 -105.22 -0.67 -4.05 16 6 C -0.07 -1.09 10.10 -39.09 -0.39 -1.48 16 7 C -0.15 -2.42 10.00 -39.67 -0.40 -2.82 16 8 C -0.09 -1.62 9.72 -39.10 -0.38 -2.00 16 9 C 0.01 0.26 4.74 -104.78 -0.50 -0.24 16 10 C -0.24 -5.43 3.68 -104.05 -0.38 -5.82 16 11 C 0.13 2.89 10.92 -17.19 -0.19 2.71 16 12 N -0.58 -13.32 10.32 -13.34 -0.14 -13.46 16 13 C 0.08 1.89 11.08 -18.03 -0.20 1.69 16 14 C -0.21 -5.06 8.73 -39.13 -0.34 -5.40 16 15 C 0.15 3.52 3.92 -106.24 -0.42 3.10 16 16 C -0.44 -10.58 6.38 -37.89 -0.24 -10.82 16 17 H 0.08 2.09 5.60 -52.49 -0.29 1.80 16 18 C 0.08 1.88 5.19 -17.32 -0.09 1.79 16 19 N -0.77 -18.24 10.92 55.56 0.61 -17.63 16 20 Si 0.90 17.86 29.59 -169.99 -5.03 12.83 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 23 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 24 C 0.14 2.96 5.39 -83.90 -0.45 2.51 16 25 H 0.09 1.73 6.44 -51.93 -0.33 1.40 16 26 H 0.09 1.86 5.72 -51.93 -0.30 1.56 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.19 2.16 8.06 -52.49 -0.42 1.73 16 29 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 32 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 33 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 34 H 0.13 3.05 6.19 -52.49 -0.32 2.72 16 35 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 LS Contribution 294.84 15.07 4.44 4.44 Total: -1.00 -27.46 294.84 -7.59 -35.06 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -3.34 Total: 8.96 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -4.28 Total: -17.57 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.62 Total: -43.73 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.46 -7.59 -35.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241457927.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.660 kcal (2) G-P(sol) polarization free energy of solvation -27.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds